Rh6CG207100

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000856
Physical Location & Seq
Reverse (-)
34425839 .. 34426447
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG207100.1

Sequence Viewer

Length: 609 bp
ATGGACTCGAGGAGAAAGGATAGGAGAGAATCAAGGTTGGAACAAGAGATTGAGAAGTACAGAGCTTCGACTCCGAAAATCACAGAGCAGTTTGCGAATCTGAAGAGGCAGCTGTATACAGTTTCAGCTGAGGAATGGGATCGCACACCGGATATTGGGGATTACTCAGCCAGGAATAAGAAGAGGAAGTTTGAGAGCTTTGTGCCGATGCCGGATACTCTTTTCGAGAAGGCTAGGCAGGAACAAGAGCATGTTACTGCATTGGACCCCAAGAGTAGGGCGGCGACTGGTACAGAGACACCGTGGTCGCAAATGCCGGTTATGGATTTGACTGCAGTGGGTGATGGTAGAAGTATTGTGTTGTCTTTGAAGTTTGATAGGCTTTCGGATTCTGTTTCAGGGCTGACAGTTGTGGACCCTAAGGGGTATCTCACTGATCTTAAGAGTATGAAGATTACCAGTGATGCAGAGATTTCAGATATAAAGAAGGCTAGATTGTTGTTAAAGAGTGTGACGCAGACTAATCTGAAGCATCCACCTGGTTGGATTGCAGCTGCGAGGTTGGAGGAAGTGGCGGGGAAGATTCAGGCTGCAAGGCAATTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

202

Amino Acids

22.91

Weight (kDa)

9.34

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 1 - 58 1.4e-16 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 116
AciI CCGC 2 cut(s) 281, 575
AclWI GGATC 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 122, 548
AfaI GTAC 2 cut(s) 59, 292
AfiI CCNNNNNNNGG 2 cut(s) 155, 276
AflII CTTAAG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 2 cut(s) 170, 538
AluBI AGCT 5 cut(s) 65, 112, 128, 198, 554
AluI AGCT 5 cut(s) 65, 112, 128, 198, 554
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 7
ApeKI GCWGC 4 cut(s) 109, 551, 554, 590
AspS9I GGNCC 2 cut(s) 265, 415
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 2 cut(s) 265, 415
AxyI CCTNAGG 1 cut(s) 420
BbvCI CCTCAGC 1 cut(s) 129
BbvI GCAGC 4 cut(s) 121, 541, 563, 577
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 2 cut(s) 172, 540
BciVI GTATCC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 234, 492, 607
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 5 cut(s) 110, 282, 552, 555, 591
BlsI GCNGC 5 cut(s) 111, 283, 553, 556, 592
Bme1390I CCNGG 2 cut(s) 172, 540
Bme18I GGWCC 2 cut(s) 265, 415
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 265, 415
BmiI GGNNCC 2 cut(s) 267, 417
BmrFI CCNGG 2 cut(s) 172, 540
BmsI GCATC 3 cut(s) 198, 454, 541
Bpu10I CCTNAGC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 276
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 292, 459
Bse21I CCTNAGG 1 cut(s) 420
BseBI CCWGG 2 cut(s) 172, 540
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 2 cut(s) 155, 276
BseMII CTCAG 2 cut(s) 120, 180
BseNI ACTGG 2 cut(s) 292, 459
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 4 cut(s) 121, 541, 563, 577
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 3 cut(s) 149, 212, 317
BslI CCNNNNNNNGG 2 cut(s) 155, 276
BsmAI GTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 7
Bsp143I GATC 3 cut(s) 139, 436, 603
BspACI CCGC 2 cut(s) 281, 575
BspCNI CTCAG 2 cut(s) 121, 179
BspLI GGNNCC 2 cut(s) 267, 417
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 2 cut(s) 292, 459
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 139, 436, 603
BssNAI GTATAC 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 172, 540
Bst4CI ACNGT 3 cut(s) 121, 303, 409
Bst6I CTCTTC 2 cut(s) 98, 176
BstAFI CTTAAG 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 129, 166, 420
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 3 cut(s) 142, 439, 606
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 139, 436, 603
BstNI CCWGG 2 cut(s) 172, 540
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 170, 538
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 4 cut(s) 121, 541, 563, 577
BstXI CCANNNNNNTGG 1 cut(s) 543
BstZ17I GTATAC 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 420
BsuI GTATCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 3 cut(s) 342, 432, 466
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 265, 415
CseI GACGC 1 cut(s) 523
CsiI ACCWGGT 1 cut(s) 538
Csp6I GTAC 2 cut(s) 58, 291
CviAII CATG 1 cut(s) 251
CviQI GTAC 2 cut(s) 58, 291
DdeI CTNAG 3 cut(s) 129, 166, 420
DpnI GATC 3 cut(s) 141, 438, 605
DpnII GATC 3 cut(s) 139, 436, 603
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 98, 176
EarI CTCTTC 2 cut(s) 98, 176
Eco47I GGWCC 2 cut(s) 265, 415
Eco57I CTGAAG 2 cut(s) 122, 548
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 170, 538
FaeI CATG 1 cut(s) 254
FaiI YATR 5 cut(s) 117, 252, 323, 449, 482
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 568
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 5 cut(s) 110, 282, 552, 555, 591
FokI GGATG 1 cut(s) 519
Fsp4HI GCNGC 5 cut(s) 110, 282, 552, 555, 591
FspBI CTAG 3 cut(s) 234, 492, 607
GluI GCNGC 5 cut(s) 110, 282, 552, 555, 591
HapII CCGG 3 cut(s) 149, 212, 317
HgaI GACGC 1 cut(s) 523
Hin1II CATG 1 cut(s) 254
HinfI GANTC 6 cut(s) 5, 29, 70, 97, 389, 583
HpaII CCGG 3 cut(s) 149, 212, 317
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 117, 415
Hpy188I TCNGA 5 cut(s) 75, 102, 388, 478, 528
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 117, 415
HpyAV CCTTC 2 cut(s) 223, 481
HpyCH4III ACNGT 3 cut(s) 121, 303, 409
HpyCH4V TGCA 5 cut(s) 260, 335, 467, 551, 593
HpyF3I CTNAG 3 cut(s) 129, 166, 420
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 3 cut(s) 139, 436, 603
Lsp1109I GCAGC 4 cut(s) 121, 541, 563, 577
LweI GCATC 3 cut(s) 198, 454, 541
MabI ACCWGGT 1 cut(s) 538
MaeI CTAG 3 cut(s) 234, 492, 607
MaeIII GTNAC 2 cut(s) 253, 511
MalI GATC 3 cut(s) 141, 438, 605
MboI GATC 3 cut(s) 139, 436, 603
MboII GAAGA 4 cut(s) 115, 193, 463, 592
MfeI CAATTG 1 cut(s) 599
MluCI AATT 1 cut(s) 599
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 3 cut(s) 18, 524, 543
MnlI CCTC 6 cut(s) 3, 99, 124, 177, 552, 559
MseI TTAA 2 cut(s) 441, 503
MspA1I CMGCKG 3 cut(s) 112, 128, 554
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 3 cut(s) 149, 212, 317
MspR9I CCNGG 2 cut(s) 172, 540
MunI CAATTG 1 cut(s) 599
MvaI CCWGG 2 cut(s) 172, 540
NdeII GATC 3 cut(s) 139, 436, 603
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 2 cut(s) 267, 417
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 7
PfeI GAWTC 4 cut(s) 29, 97, 389, 583
PkrI GCNGC 5 cut(s) 111, 283, 553, 556, 592
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 170, 538
PspGI CCWGG 2 cut(s) 170, 538
PspN4I GGNNCC 2 cut(s) 267, 417
PspPI GGNCC 2 cut(s) 265, 415
PspXI VCTCGAGB 1 cut(s) 7
PstI CTGCAG 1 cut(s) 337
PvuII CAGCTG 3 cut(s) 112, 128, 554
RsaI GTAC 2 cut(s) 59, 292
RsaNI GTAC 2 cut(s) 58, 291
SaqAI TTAA 2 cut(s) 441, 503
SatI GCNGC 5 cut(s) 110, 282, 552, 555, 591
Sau3AI GATC 3 cut(s) 139, 436, 603
Sau96I GGNCC 2 cut(s) 265, 415
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 172, 540
SetI ASST 8 cut(s) 38, 67, 114, 130, 200, 541, 556, 563
SexAI ACCWGGT 1 cut(s) 538
SfaNI GCATC 3 cut(s) 198, 454, 541
SfcI CTRYAG 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 7
SinI GGWCC 2 cut(s) 265, 415
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 7, 440
SmoI CTYRAG 2 cut(s) 7, 440
Sse9I AATT 1 cut(s) 599
SsiI CCGC 2 cut(s) 281, 575
SspMI CTAG 3 cut(s) 234, 492, 607
StyD4I CCNGG 2 cut(s) 170, 538
TaaI ACNGT 3 cut(s) 121, 303, 409
TaqI TCGA 3 cut(s) 8, 68, 225
TasI AATT 1 cut(s) 599
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 4 cut(s) 29, 97, 389, 583
Tru1I TTAA 2 cut(s) 441, 503
Tru9I TTAA 2 cut(s) 441, 503
TscAI CASTG 3 cut(s) 342, 439, 466
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 4 cut(s) 109, 551, 554, 590
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 464
TspRI CASTG 3 cut(s) 342, 439, 466
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 265, 415
XceI RCATGY 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 3 cut(s) 234, 492, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.