Rmu_sc0040731.1_g000001

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040731.1
OG0000856
Physical Location & Seq
Forward (+)
1 .. 1713
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040731.1_g000001.1.cds

Sequence Viewer

Length: 724 bp
cactcagccccaccattacgccttcctcacagccaagcccccgcccaactacttcgccagcctcggcgccaccgacttcaccacctgctccgacattggccccgcctgccccactccccctccaatcggagctgttcgggaaaatttggattacgaggacaagggttacaacgagaaccagaagttcgacgagttcgaaggaaatgacatggggcttttcgccaacgcggagtacgacgaggacgacgacgcggctgatgccgtttacgcggcgaagatcccggaggagttgatcgaagaggaagctgagtttcgtgtccgtcaaggaatgggagagcttaccagaaatggggattattcgtggaagaacaggaagaagaggaagttcgaaagctttgttccggtgccggataccattttcgagaaggccaggctggagaggcagcatgttgcgtctgtagacccaatgagtacagatttgactgcattgggcgagggaaagggcacagtgatgaagctgaaattggataggctttcggattcggtttcggggctcaccagtgtggatccaaaggggtatcttagtggtcttttgagtatgaatatgaacgttagtactagttctgatgtttcggatataaagaagactagacagttgtataggagtgtaagagagtcaaagcctaaggacccgtgtggttggaggagatggtggggaagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

240

Amino Acids

26.92

Weight (kDa)

5.0

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 93
AccB1I GGYRCC 2 cut(s) 66, 404
AccI GTMKAC 1 cut(s) 460
AccII CGCG 3 cut(s) 228, 252, 270
AciI CCGC 5 cut(s) 42, 103, 228, 252, 270
AclI AACGTT 1 cut(s) 610
AclWI GGATC 3 cut(s) 272, 561, 574
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 3 cut(s) 234, 473, 617
AfiI CCNNNNNNNGG 2 cut(s) 126, 349
AhlI ACTAGT 1 cut(s) 618
AjnI CCWGG 1 cut(s) 429
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AleI CACNNNNGTG 1 cut(s) 561
AluBI AGCT 5 cut(s) 132, 306, 338, 394, 518
AluI AGCT 5 cut(s) 132, 306, 338, 394, 518
AlwI GGATC 3 cut(s) 272, 561, 574
AoxI GGCC 2 cut(s) 98, 427
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 99, 689
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 2 cut(s) 71, 548
AsuII TTCGAA 2 cut(s) 196, 388
AvaII GGWCC 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 507
BamHI GGATCC 1 cut(s) 566
BanI GGYRCC 2 cut(s) 66, 404
BanII GRGCYC 1 cut(s) 556
BbsI GAAGAC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 455
BccI CCATC 1 cut(s) 703
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 431
BciVI GTATCC 1 cut(s) 404
BcnI CCSGG 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 618
BfaI CTAG 2 cut(s) 619, 649
BfmI CTRYAG 1 cut(s) 457
BfoI RGCGCY 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 93
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 3 cut(s) 253, 271, 444
BlsI GCNGC 3 cut(s) 254, 272, 445
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 2 cut(s) 282, 431
Bme18I GGWCC 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 99, 689
BmiI GGNNCC 5 cut(s) 68, 101, 406, 568, 691
BmrFI CCNGG 2 cut(s) 282, 431
BmsI GCATC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 456
Bpu14I TTCGAA 2 cut(s) 196, 388
BpuMI CCSGG 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 349
Bse1I ACTGG 1 cut(s) 559
Bse21I CCTNAGG 1 cut(s) 685
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 62
BseLI CCNNNNNNNGG 2 cut(s) 126, 349
BseMII CTCAG 2 cut(s) 18, 298
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 2 cut(s) 300, 719
BseSI GKGCMC 1 cut(s) 507
BseXI GCAGC 1 cut(s) 455
Bsh1236I CGCG 3 cut(s) 228, 252, 270
BshFI GGCC 2 cut(s) 100, 429
BshNI GGYRCC 2 cut(s) 66, 404
BsiSI CCGG 3 cut(s) 282, 402, 408
BslI CCNNNNNNNGG 2 cut(s) 126, 349
BsnI GGCC 2 cut(s) 100, 429
Bsp119I TTCGAA 2 cut(s) 196, 388
Bsp1286I GDGCHC 2 cut(s) 507, 556
Bsp143I GATC 3 cut(s) 277, 292, 566
BspACI CCGC 5 cut(s) 42, 103, 228, 252, 270
BspANI GGCC 2 cut(s) 100, 429
BspCNI CTCAG 2 cut(s) 17, 299
BspFNI CGCG 3 cut(s) 228, 252, 270
BspLI GGNNCC 5 cut(s) 68, 101, 406, 568, 691
BspMI ACCTGC 1 cut(s) 93
BspPI GGATC 3 cut(s) 272, 561, 574
BspT104I TTCGAA 2 cut(s) 196, 388
BspT107I GGYRCC 2 cut(s) 66, 404
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 3 cut(s) 277, 292, 566
BssNI GRCGYC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 509, 655
Bst6I CTCTTC 2 cut(s) 292, 372
BstACI GRCGYC 1 cut(s) 67
BstBI TTCGAA 2 cut(s) 196, 388
BstC8I GCNNGC 2 cut(s) 59, 107
BstDEI CTNAG 4 cut(s) 4, 307, 582, 685
BstFNI CGCG 3 cut(s) 228, 252, 270
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 3 cut(s) 280, 295, 569
BstMBI GATC 3 cut(s) 277, 292, 566
BstMWI GCNNNNNNNGC 4 cut(s) 106, 258, 267, 440
BstNI CCWGG 1 cut(s) 431
BstNSI RCATGY 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 280, 429
BstSFI CTRYAG 1 cut(s) 457
BstSLI GKGCMC 1 cut(s) 507
BstUI CGCG 3 cut(s) 228, 252, 270
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 2 cut(s) 277, 566
BstYI RGATCY 2 cut(s) 277, 566
Bsu36I CCTNAGG 1 cut(s) 685
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 100, 429
BtsIMutI CAGTG 2 cut(s) 514, 566
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 59, 107
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 99, 689
CseI GACGC 2 cut(s) 258, 442
Csp6I GTAC 3 cut(s) 233, 472, 616
CviAII CATG 2 cut(s) 209, 447
CviQI GTAC 3 cut(s) 233, 472, 616
DdeI CTNAG 4 cut(s) 4, 307, 582, 685
DinI GGCGCC 1 cut(s) 68
DpnI GATC 3 cut(s) 279, 294, 568
DpnII GATC 3 cut(s) 277, 292, 566
Eam1104I CTCTTC 2 cut(s) 292, 372
EarI CTCTTC 2 cut(s) 292, 372
Eco24I GRGCYC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 689
Eco81I CCTNAGG 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 556
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
FaeI CATG 2 cut(s) 212, 450
FaiI YATR 6 cut(s) 210, 448, 600, 606, 639, 661
FatI CATG 2 cut(s) 208, 446
FauI CCCGC 2 cut(s) 49, 110
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 3 cut(s) 253, 271, 444
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 3 cut(s) 253, 271, 444
FspBI CTAG 2 cut(s) 619, 649
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 253, 271, 444
GsuI CTGGAG 1 cut(s) 456
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 2 cut(s) 100, 429
HapII CCGG 3 cut(s) 282, 402, 408
HgaI GACGC 2 cut(s) 258, 442
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 212, 450
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 540, 675
HpaII CCGG 3 cut(s) 282, 402, 408
HphI GGTGA 2 cut(s) 71, 548
Hpy166II GTNNAC 2 cut(s) 266, 461
Hpy188I TCNGA 5 cut(s) 92, 129, 539, 626, 635
Hpy188III TCNNGA 2 cut(s) 138, 422
Hpy8I GTNNAC 2 cut(s) 266, 461
Hpy99I CGWCG 4 cut(s) 192, 240, 249, 252
HpyAV CCTTC 3 cut(s) 32, 192, 419
HpyCH4III ACNGT 2 cut(s) 509, 655
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 258, 267, 440
HpyF3I CTNAG 4 cut(s) 4, 307, 582, 685
HpySE526I ACGT 1 cut(s) 610
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 212, 450
HspAI GCGC 1 cut(s) 67
KasI GGCGCC 1 cut(s) 66
Kzo9I GATC 3 cut(s) 277, 292, 566
LmnI GCTCC 2 cut(s) 93, 129
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 1 cut(s) 248
MaeI CTAG 2 cut(s) 619, 649
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 1 cut(s) 165
MalI GATC 3 cut(s) 279, 294, 568
MboI GATC 3 cut(s) 277, 292, 566
MboII GAAGA 6 cut(s) 287, 309, 377, 386, 389, 656
MflI RGATCY 2 cut(s) 277, 566
MhlI GDGCHC 2 cut(s) 507, 556
MluCI AATT 2 cut(s) 143, 522
Mly113I GGCGCC 1 cut(s) 67
MlyI GAGTC 1 cut(s) 684
MmeI TCCRAC 2 cut(s) 115, 681
MslI CAYNNNNRTG 2 cut(s) 510, 561
MspI CCGG 3 cut(s) 282, 402, 408
MspR9I CCNGG 2 cut(s) 282, 431
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 3 cut(s) 228, 252, 270
MwoI GCNNNNNNNGC 4 cut(s) 106, 258, 267, 440
NarI GGCGCC 1 cut(s) 67
NciI CCSGG 1 cut(s) 282
NdeII GATC 3 cut(s) 277, 292, 566
NlaIII CATG 2 cut(s) 212, 450
NlaIV GGNNCC 5 cut(s) 68, 101, 406, 568, 691
NmeAIII GCCGAG 1 cut(s) 43
NspI RCATGY 1 cut(s) 450
NspV TTCGAA 2 cut(s) 196, 388
OliI CACNNNNGTG 1 cut(s) 561
PaqCI CACCTGC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 5 cut(s) 70, 193, 232, 241, 244
PfeI GAWTC 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 3 cut(s) 254, 272, 445
PleI GAGTC 1 cut(s) 683
PluTI GGCGCC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 689
Psp1406I AACGTT 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 5 cut(s) 68, 101, 406, 568, 691
PspPI GGNCC 2 cut(s) 99, 689
PspPPI RGGWCCY 1 cut(s) 689
PsuI RGATCY 2 cut(s) 277, 566
RsaI GTAC 3 cut(s) 234, 473, 617
RsaNI GTAC 3 cut(s) 233, 472, 616
RseI CAYNNNNRTG 2 cut(s) 510, 561
SatI GCNGC 3 cut(s) 253, 271, 444
Sau3AI GATC 3 cut(s) 277, 292, 566
Sau96I GGNCC 2 cut(s) 99, 689
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 1 cut(s) 684
ScrFI CCNGG 2 cut(s) 282, 431
SduI GDGCHC 2 cut(s) 507, 556
SetI ASST 7 cut(s) 87, 134, 308, 340, 396, 520, 613
SfaNI GCATC 1 cut(s) 248
SfcI CTRYAG 1 cut(s) 457
SfoI GGCGCC 1 cut(s) 68
SfuI TTCGAA 2 cut(s) 196, 388
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 2 cut(s) 510, 561
SpeI ACTAGT 1 cut(s) 618
Sse9I AATT 2 cut(s) 143, 522
SsiI CCGC 5 cut(s) 42, 103, 228, 252, 270
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 2 cut(s) 619, 649
StyD4I CCNGG 2 cut(s) 280, 429
TaaI ACNGT 2 cut(s) 509, 655
TaiI ACGT 1 cut(s) 613
TaqI TCGA 5 cut(s) 187, 196, 295, 388, 421
TasI AATT 2 cut(s) 143, 522
TatI WGTACW 2 cut(s) 471, 615
TauI GCSGC 2 cut(s) 255, 273
TfiI GAWTC 1 cut(s) 540
TscAI CASTG 2 cut(s) 514, 566
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 3 cut(s) 528, 615, 621
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 2 cut(s) 514, 566
VpaK11BI GGWCC 1 cut(s) 689
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 460
XspI CTAG 2 cut(s) 619, 649
ZrmI AGTACT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.