Rw6G017550

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000856
Physical Location & Seq
Reverse (-)
34785596 .. 34796960
11365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017550.1

Sequence Viewer

Length: 2814 bp
ATGGTGTTCATCACATCTCCGAACCACAGAACCCTAAACCTGAATCTCAACCCAAAAACTACCACCCTCCAAACCCTCAAGCTCCAAATCCAGCAAACTTCCCACATCCCCATCTCCCACCAGCGCCTCTTCATCTCCCAAAGCCTCCAAATCCTAACCCAAACTGACTCCACCCTCCTCTTCGACCTCGGCATCTCCCCCCTCTCTACCCTAACCCTCCACATCCCCTTATTCAGCCTCACCAAACCCCTTGCCGTCCCCAAACCCCGCCTCGACTTCCTCAACTCCAAGCCTCCCTCCAATTATGTCGTCGGCCTAGGCCCCGGCCCGTGCCTCTCCCGACTTGCCCGATCTGTCGGCGGGGCTGCCGGGGCGGCCCAGCCTGGGGTGGGCTGCAGGCGCAGGAAGCAAGAGGAAGACGACGGCAAGGAGAATGGTTACGATGAGAATAAGAAATTAGATGAGTTCGAAGGAAACAATGAGGTCGATGCAGTGTGGGAAGCCATTGAGCAGAAAGGTAGGAGAGAGGCTAGGTTGAAACAAGAGATTGAGAAGTACAGAGCTTCGAATCTGAAAGTCACAGAGCAGTTTGCGAATCTGAAGAGGCAACTGTATACAGTTTCAGTTGAGGAATGGGATCGCATACCGGACATTGGGGATTACTCATCCAGGAATAAGAAGAAGTTTGAGAGCTTTGCTAGGCAGGAACAGGAGCATGTTACTGCATTAAACCCCAAGAGTAGGGTGGCGACTGGTACAGAGACGCTGTGGTCGCAAACACCGATTACGGATTTGACTGCAGTGGGGGATGGTAGAAGTACTGTGTTGTCTTTGAAGTTAGATAGGCTTTCGGATTCTGTTTCTAGGTTGATAGTTGTGGACCCTAAGGGGTATCTCACTGATCTTAAGAATATAAAGAAGGCTAGATTGTTGTTAAAGAGTGTGATGCAGACTAATCTAAAGCATCCACCTAGTTGGATTGCGGCTGCGAGGTTGGAGAAAGTGGCGGGGAATATTCAAGCAGCAAGGCAATTGATCCAGAAAGGGTGTGAGGAATGTCCCAAGAGTGAGGATGTGTGGTTGGAGGCATGTAGGCTTGCCCGTCCTGATGGAGCCAAGGCTGTGATTGCTGCTGGAGTCAAGTCGATACCCAATTCAGTTAAGCTGTGGATGCAGGCGGCGAAATTGGAGCATGATGACTCGAATAAGAGTAGGGTGTTGAGGAAAGGGTTGGAACACATTCCTGATTCTATTAGGCTGTGGAAGGCGGTGGTGGAGCTGGCAAATGAGGAGGATGCCAGACTTTTGCTTCAAAGGGTTGTGGAGTGTTGTCTTTTTCACATTGCGTTGTGGCTTGCACTAGCGAGATTGGAAACTTATGAAAATGCCAGGAAGGTCCTTAACAAGGCTGGCGAGAAGCTTTCGAAGGAGCCTGCCATTTGTATTACTGCAGCAAAGTTGGAAGAAGCTAATGGGAACACATTAACAGTTGCGAACATTATTGAAAGGGGTATAAGGGCTTTGCAAAGAGAGGGGTTGGTGATTGATAGAGAAGCATGGATGAAGGAGGCTAAAACTGCCGAGCGAGCAGGGTCTGTGGCAACTTGCCAAGCCATTATTCGGAACACAATTGGGATTGGTGTGGAGGAAGAAGATAGGAAGAGGACATGGGTTGCTGATACAGAGGAAAGTAAGAAGAGCATATGGCTTAAAGCAGCACAGCTTGAAAAGAGCCATGGGACAAGGAAATCTCTTGATGCCCTGCTTCCTAAAGCATTTACCTACCAATCACAGGCTGAAGTCTTATGGCTTATGGGTGCTAAGGAGAAGTGGCTTGCTGGGGACGTCCCTGCTGCCCGTGCAATCCTCCAAGAAGCTTATGCTGCCATTTCGAATTCTGAAGAAATTTGGCTTGCTGCGTTTAAGCTTGAATTTGAGAATCATGAACCTGAGAGAGCTAGGATGCTTCTTGCCAAAGCCCGAGAAAGGGGAGGAACAGAGAGAGTATGGATGAAATCAACAATCGTTGAAAGAGAATTAGGGAACCTCGATGAGGAGAGGAAGTTGCTTGTTGAAGGATTGAAGTGCTTCCCTTCGTTCTTTAAATTGTGGTTGATGCTTGGACAGCTAGAGGAACGGCTTAACCATTTGGAAAAAGCCAAGGAGGCTTATGACTCGGGTCTTAAGCACTACTCCAATTCTATACCACTCTGGCTTTCTCTTGCAAATCTTGAAGAGAAGATGAATGGGCTGAGTAAAGCTCGTGCAGTTCTTACGATGGCCAGGAAGAAAAATCCTCAGAACCCTGAACTGTGGCTTGCTACTGTTCGAGCTGAATTGAGGCATGGTAATAAGAGGGAAGCTGATATTTTGATGGCAAAGGCCTTGCAGGAGTGTTCCAATAGTGGTATCTTGTGGGCAGCTTCTATTGAGATGGTACCCCGTCCCCAAAGGAAGACCAAAAGTATGGATGCTCTCAAGAAATGTGATCACGATCCCCATGTCATTGCTTTATTCTGGCTCGACAGGAAGGTTGACAAGGCTAGGACTTGGCTCAACAGGGCAGTGACACTTGCCCCAGATATTGGAGATTTCTGGGCTTTATACTACAAATTTGAACTTCATAATGGGACTGACGAGAACCAGAAGGATGTACTGAAAAGATGCATTGCTGCAGAACCAAAGCATGGTGAAAAATGGCAACCTATTTCAAAGGTAGTAGAGAACTATCACCAACCAACTGAAGCTATCTTGAAGAAGGCGGTTGTTGCCCTTGGCAAGGAAGAGAGTGCAGCTGAAAATAATAGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

937

Amino Acids

105.63

Weight (kDa)

9.14

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 98 - 224 5.7e-17 PRP1 splicing factor, N-terminal
HAT_PRP39_N PF23240 698 - 811 2.6e-07 PRP39 N-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 769
AatII GACGTC 1 cut(s) 1848
Acc65I GGTACC 1 cut(s) 2437
AccB1I GGYRCC 1 cut(s) 2437
AccB7I CCANNNNNTGG 2 cut(s) 2585, 2687
AccI GTMKAC 1 cut(s) 614
AciI CCGC 8 cut(s) 268, 360, 374, 983, 1007, 1178, 1268, 2762
AclWI GGATC 3 cut(s) 645, 1030, 2489
AcoI YGGCCR 1 cut(s) 2280
AcsI RAATTY 4 cut(s) 1894, 1905, 1931, 2612
AcuI CTGAAG 4 cut(s) 620, 1818, 1920, 2763
AcyI GRCGYC 1 cut(s) 1845
AfaI GTAC 5 cut(s) 557, 757, 820, 2439, 2655
AflII CTTAAG 2 cut(s) 905, 2183
AjnI CCWGG 4 cut(s) 382, 668, 1388, 2282
AjuI GAANNNNNNNTTGG 2 cut(s) 1602, 1634
Alw26I GTCTC 1 cut(s) 755
AlwI GGATC 3 cut(s) 645, 1030, 2489
AlwNI CAGNNNCTG 1 cut(s) 1595
Ama87I CYCGRG 2 cut(s) 1980, 2176
AoxI GGCC 6 cut(s) 313, 319, 325, 375, 2280, 2382
ApoI RAATTY 4 cut(s) 1894, 1905, 1931, 2612
Asp700I GAANNNNTTC 2 cut(s) 1239, 2087
Asp718I GGTACC 1 cut(s) 2437
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 2 cut(s) 126, 402
AspS9I GGNCC 5 cut(s) 320, 326, 376, 880, 1396
AsuC2I CCSGG 2 cut(s) 324, 370
AsuHPI GGTGA 4 cut(s) 232, 1552, 2702, 2723
AsuII TTCGAA 4 cut(s) 468, 566, 1424, 1892
AvaI CYCGRG 2 cut(s) 1980, 2176
AvaII GGWCC 2 cut(s) 880, 1396
AvrII CCTAGG 1 cut(s) 316
AxyI CCTNAGG 1 cut(s) 885
BalI TGGCCA 1 cut(s) 2282
BanI GGYRCC 1 cut(s) 2437
BauI CACGAG 1 cut(s) 2262
BbsI GAAGAC 2 cut(s) 423, 2462
BccI CCATC 6 cut(s) 119, 803, 1103, 2272, 2368, 2428
BceAI ACGGC 3 cut(s) 239, 439, 2153
BciT130I CCWGG 4 cut(s) 384, 670, 1390, 2284
BclI TGATCA 1 cut(s) 2488
BcnI CCSGG 2 cut(s) 324, 370
BcoDI GTCTC 1 cut(s) 755
BfmI CTRYAG 4 cut(s) 394, 798, 1449, 2673
BfoI RGCGCY 1 cut(s) 127
BfrI CTTAAG 2 cut(s) 905, 2183
BglI GCCNNNNNGGC 2 cut(s) 374, 2165
BlnI CCTAGG 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 820
Bme1390I CCNGG 6 cut(s) 324, 370, 384, 670, 1390, 2284
Bme18I GGWCC 2 cut(s) 880, 1396
BmeT110I CYCGRG 2 cut(s) 1980, 2176
BmgT120I GGNCC 5 cut(s) 320, 326, 376, 880, 1396
BmiI GGNNCC 6 cut(s) 322, 882, 1114, 1431, 2045, 2439
BmrFI CCNGG 6 cut(s) 324, 370, 384, 670, 1390, 2284
BoxI GACNNNNGTC 1 cut(s) 2178
BpiI GAAGAC 2 cut(s) 423, 2462
BplI GAGNNNNNCTC 2 cut(s) 2245, 2277
BpmI CTGGAG 1 cut(s) 1155
Bpu10I CCTNAGC 1 cut(s) 1821
Bpu14I TTCGAA 4 cut(s) 468, 566, 1424, 1892
BpuEI CTTGAG 2 cut(s) 62, 2462
BpuMI CCSGG 2 cut(s) 324, 370
BsaBI GATNNNNATC 1 cut(s) 2493
BsaHI GRCGYC 1 cut(s) 1845
BsaJI CCNNGG 9 cut(s) 187, 316, 322, 369, 383, 1116, 1735, 2160, 2773
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 2048, 2078
Bse1I ACTGG 1 cut(s) 757
Bse21I CCTNAGG 1 cut(s) 885
Bse3DI GCAATG 3 cut(s) 1341, 2505, 2667
Bse8I GATNNNNATC 1 cut(s) 2493
BseBI CCWGG 4 cut(s) 384, 670, 1390, 2284
BseDI CCNNGG 9 cut(s) 187, 316, 322, 369, 383, 1116, 1735, 2160, 2773
BseJI GATNNNNATC 1 cut(s) 2493
BseMI GCAATG 3 cut(s) 1341, 2505, 2667
BseMII CTCAG 3 cut(s) 1941, 2243, 2312
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 3 cut(s) 167, 1304, 2069
BseYI CCCAGC 2 cut(s) 378, 1838
BsgI GTGCAG 2 cut(s) 2286, 2811
BshFI GGCC 6 cut(s) 315, 321, 327, 377, 2282, 2384
BshNI GGYRCC 1 cut(s) 2437
BsiHKCI CYCGRG 2 cut(s) 1980, 2176
BsiSI CCGG 3 cut(s) 324, 369, 647
BslFI GGGAC 7 cut(s) 242, 1044, 1753, 1832, 1856, 2430, 2644
BsmAI GTCTC 1 cut(s) 755
BsmBI CGTCTC 1 cut(s) 755
BsmFI GGGAC 7 cut(s) 242, 1044, 1753, 1832, 1856, 2430, 2644
BsnI GGCC 6 cut(s) 315, 321, 327, 377, 2282, 2384
BsoBI CYCGRG 2 cut(s) 1980, 2176
Bsp119I TTCGAA 4 cut(s) 468, 566, 1424, 1892
Bsp143I GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
Bsp19I CCATGG 1 cut(s) 1735
BspACI CCGC 8 cut(s) 268, 360, 374, 983, 1007, 1178, 1268, 2762
BspANI GGCC 6 cut(s) 315, 321, 327, 377, 2282, 2384
BspCNI CTCAG 3 cut(s) 1942, 2244, 2311
BspHI TCATGA 1 cut(s) 1942
BspLI GGNNCC 6 cut(s) 322, 882, 1114, 1431, 2045, 2439
BspMAI CTGCAG 4 cut(s) 398, 802, 1453, 2677
BspPI GGATC 3 cut(s) 645, 1030, 2489
BspQI GCTCTTC 1 cut(s) 1691
BspT104I TTCGAA 4 cut(s) 468, 566, 1424, 1892
BspT107I GGYRCC 1 cut(s) 2437
BspTI CTTAAG 2 cut(s) 905, 2183
BsrDI GCAATG 3 cut(s) 1341, 2505, 2667
BsrI ACTGG 1 cut(s) 757
BssECI CCNNGG 9 cut(s) 187, 316, 322, 369, 383, 1116, 1735, 2160, 2773
BssMI GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
BssNAI GTATAC 1 cut(s) 615
BssNI GRCGYC 1 cut(s) 1845
BssSI CACGAG 1 cut(s) 2262
BssT1I CCWWGG 5 cut(s) 316, 1116, 1735, 2160, 2773
Bst1107I GTATAC 1 cut(s) 615
Bst2BI CACGAG 1 cut(s) 2262
Bst2UI CCWGG 4 cut(s) 384, 670, 1390, 2284
Bst4CI ACNGT 7 cut(s) 612, 619, 823, 1489, 2313, 2326, 2811
Bst6I CTCTTC 7 cut(s) 134, 185, 596, 1655, 1691, 2229, 2778
BstACI GRCGYC 1 cut(s) 1845
BstAFI CTTAAG 2 cut(s) 905, 2183
BstBI TTCGAA 4 cut(s) 468, 566, 1424, 1892
BstDEI CTNAG 5 cut(s) 885, 1821, 1950, 2252, 2298
BstDSI CCRYGG 1 cut(s) 1735
BstENI CCTNNNNNAGG 3 cut(s) 1403, 2051, 2777
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 402
BstKTI GATC 6 cut(s) 353, 640, 904, 1038, 2491, 2497
BstMAI GTCTC 1 cut(s) 755
BstMBI GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
BstNI CCWGG 4 cut(s) 384, 670, 1390, 2284
BstNSI RCATGY 2 cut(s) 719, 1092
BstPAI GACNNNNGTC 1 cut(s) 2178
BstSCI CCNGG 6 cut(s) 322, 368, 382, 668, 1388, 2282
BstSFI CTRYAG 4 cut(s) 394, 798, 1449, 2673
BstV2I GAAGAC 2 cut(s) 423, 2462
BstXI CCANNNNNNTGG 2 cut(s) 975, 2467
BstZ17I GTATAC 1 cut(s) 615
Bsu36I CCTNAGG 1 cut(s) 885
BsuRI GGCC 6 cut(s) 315, 321, 327, 377, 2282, 2384
BtgI CCRYGG 1 cut(s) 1735
BtsI GCAGTG 3 cut(s) 498, 807, 2571
BtsIMutI CAGTG 4 cut(s) 498, 807, 897, 2571
CaiI CAGNNNCTG 1 cut(s) 1595
CciI TCATGA 1 cut(s) 1942
CfoI GCGC 2 cut(s) 126, 402
Cfr13I GGNCC 5 cut(s) 320, 326, 376, 880, 1396
CseI GACGC 1 cut(s) 772
Csp6I GTAC 5 cut(s) 556, 756, 819, 2438, 2654
CviQI GTAC 5 cut(s) 556, 756, 819, 2438, 2654
DdeI CTNAG 5 cut(s) 885, 1821, 1950, 2252, 2298
DpnI GATC 6 cut(s) 352, 639, 903, 1037, 2490, 2496
DpnII GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
DraI TTTAAA 1 cut(s) 2104
DrdI GACNNNNNNGTC 1 cut(s) 769
DseDI GACNNNNNNGTC 1 cut(s) 769
EaeI YGGCCR 1 cut(s) 2280
Eam1104I CTCTTC 7 cut(s) 134, 185, 596, 1655, 1691, 2229, 2778
EarI CTCTTC 7 cut(s) 134, 185, 596, 1655, 1691, 2229, 2778
Eco130I CCWWGG 5 cut(s) 316, 1116, 1735, 2160, 2773
Eco147I AGGCCT 1 cut(s) 2384
Eco47I GGWCC 2 cut(s) 880, 1396
Eco57I CTGAAG 4 cut(s) 620, 1818, 1920, 2763
Eco81I CCTNAGG 1 cut(s) 885
Eco88I CYCGRG 2 cut(s) 1980, 2176
EcoNI CCTNNNNNAGG 3 cut(s) 1403, 2051, 2777
EcoO109I RGGNCCY 2 cut(s) 320, 1396
EcoRI GAATTC 1 cut(s) 1894
EcoRII CCWGG 4 cut(s) 382, 668, 1388, 2282
EcoT14I CCWWGG 5 cut(s) 316, 1116, 1735, 2160, 2773
EcoT22I ATGCAT 1 cut(s) 2669
ErhI CCWWGG 5 cut(s) 316, 1116, 1735, 2160, 2773
Esp3I CGTCTC 1 cut(s) 755
FaqI GGGAC 7 cut(s) 242, 1044, 1753, 1832, 1856, 2430, 2644
FauI CCCGC 3 cut(s) 275, 353, 1000
FauNDI CATATG 1 cut(s) 1703
FbaI TGATCA 1 cut(s) 2488
FblI GTMKAC 1 cut(s) 614
GlaI GCGC 2 cut(s) 125, 401
GsaI CCCAGC 2 cut(s) 382, 1842
GsuI CTGGAG 1 cut(s) 1155
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 6 cut(s) 315, 321, 327, 377, 2282, 2384
HapII CCGG 3 cut(s) 324, 369, 647
HgaI GACGC 1 cut(s) 772
HhaI GCGC 2 cut(s) 126, 402
Hin1I GRCGYC 1 cut(s) 1845
Hin6I GCGC 2 cut(s) 124, 400
HinP1I GCGC 2 cut(s) 124, 400
HincII GTYRAC 1 cut(s) 2536
HindII GTYRAC 1 cut(s) 2536
HindIII AAGCTT 3 cut(s) 1418, 1875, 1925
HpaII CCGG 3 cut(s) 324, 369, 647
HphI GGTGA 4 cut(s) 232, 1552, 2702, 2723
Hpy166II GTNNAC 3 cut(s) 615, 880, 2536
Hpy188I TCNGA 7 cut(s) 21, 573, 600, 853, 1623, 1900, 2301
Hpy8I GTNNAC 3 cut(s) 615, 880, 2536
Hpy99I CGWCG 2 cut(s) 314, 425
HpyCH4III ACNGT 7 cut(s) 612, 619, 823, 1489, 2313, 2326, 2811
HpyCH4IV ACGT 1 cut(s) 1845
HpyF3I CTNAG 5 cut(s) 885, 1821, 1950, 2252, 2298
HpySE526I ACGT 1 cut(s) 1845
Hsp92I GRCGYC 1 cut(s) 1845
HspAI GCGC 2 cut(s) 124, 400
KpnI GGTACC 1 cut(s) 2441
Ksp22I TGATCA 1 cut(s) 2488
Kzo9I GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
LguI GCTCTTC 1 cut(s) 1691
LmnI GCTCC 6 cut(s) 87, 712, 1112, 1189, 1276, 1429
MaeII ACGT 1 cut(s) 1845
MaeIII GTNAC 4 cut(s) 437, 577, 718, 2566
MalI GATC 6 cut(s) 352, 639, 903, 1037, 2490, 2496
MboI GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
MfeI CAATTG 2 cut(s) 1031, 1629
MlsI TGGCCA 1 cut(s) 2282
MluNI TGGCCA 1 cut(s) 2282
MlyI GAGTC 4 cut(s) 161, 1146, 1193, 2168
MmeI TCCRAC 5 cut(s) 956, 975, 1062, 1212, 1440
Mox20I TGGCCA 1 cut(s) 2282
Mph1103I ATGCAT 1 cut(s) 2669
MroXI GAANNNNTTC 2 cut(s) 1239, 2087
MscI TGGCCA 1 cut(s) 2282
Msp20I TGGCCA 1 cut(s) 2282
MspA1I CMGCKG 1 cut(s) 2795
MspCI CTTAAG 2 cut(s) 905, 2183
MspI CCGG 3 cut(s) 324, 369, 647
MspR9I CCNGG 6 cut(s) 324, 370, 384, 670, 1390, 2284
MunI CAATTG 2 cut(s) 1031, 1629
MvaI CCWGG 4 cut(s) 384, 670, 1390, 2284
NciI CCSGG 2 cut(s) 324, 370
NcoI CCATGG 1 cut(s) 1735
NdeI CATATG 1 cut(s) 1703
NdeII GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
NlaIV GGNNCC 6 cut(s) 322, 882, 1114, 1431, 2045, 2439
NmeAIII GCCGAG 2 cut(s) 168, 1606
NmuCI GTSAC 2 cut(s) 577, 2566
NsiI ATGCAT 1 cut(s) 2669
NspI RCATGY 2 cut(s) 719, 1092
NspV TTCGAA 4 cut(s) 468, 566, 1424, 1892
PagI TCATGA 1 cut(s) 1942
PceI AGGCCT 1 cut(s) 2384
PciSI GCTCTTC 1 cut(s) 1691
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PdmI GAANNNNTTC 2 cut(s) 1239, 2087
PfeI GAWTC 6 cut(s) 43, 568, 595, 854, 1247, 1939
PflMI CCANNNNNTGG 2 cut(s) 2585, 2687
PfoI TCCNGGA 1 cut(s) 668
PleI GAGTC 4 cut(s) 161, 1145, 1193, 2168
PpsI GAGTC 4 cut(s) 161, 1145, 1193, 2168
PpuMI RGGWCCY 1 cut(s) 1396
PshAI GACNNNNGTC 1 cut(s) 2178
Psp5II RGGWCCY 1 cut(s) 1396
Psp6I CCWGG 4 cut(s) 382, 668, 1388, 2282
PspFI CCCAGC 2 cut(s) 378, 1838
PspGI CCWGG 4 cut(s) 382, 668, 1388, 2282
PspN4I GGNNCC 6 cut(s) 322, 882, 1114, 1431, 2045, 2439
PspPI GGNCC 5 cut(s) 320, 326, 376, 880, 1396
PspPPI RGGWCCY 1 cut(s) 1396
PstI CTGCAG 4 cut(s) 398, 802, 1453, 2677
PstNI CAGNNNCTG 1 cut(s) 1595
PvuII CAGCTG 1 cut(s) 2795
RsaI GTAC 5 cut(s) 557, 757, 820, 2439, 2655
RsaNI GTAC 5 cut(s) 556, 756, 819, 2438, 2654
SapI GCTCTTC 1 cut(s) 1691
Sau3AI GATC 6 cut(s) 350, 637, 901, 1035, 2488, 2494
Sau96I GGNCC 5 cut(s) 320, 326, 376, 880, 1396
ScaI AGTACT 1 cut(s) 820
SchI GAGTC 4 cut(s) 161, 1146, 1193, 2168
ScrFI CCNGG 6 cut(s) 324, 370, 384, 670, 1390, 2284
SfcI CTRYAG 4 cut(s) 394, 798, 1449, 2673
SfuI TTCGAA 4 cut(s) 468, 566, 1424, 1892
SinI GGWCC 2 cut(s) 880, 1396
SmlI CTYRAG 4 cut(s) 77, 905, 2183, 2477
SmoI CTYRAG 4 cut(s) 77, 905, 2183, 2477
SseBI AGGCCT 1 cut(s) 2384
SsiI CCGC 8 cut(s) 268, 360, 374, 983, 1007, 1178, 1268, 2762
SspI AATATT 1 cut(s) 1015
StuI AGGCCT 1 cut(s) 2384
StyD4I CCNGG 6 cut(s) 322, 368, 382, 668, 1388, 2282
StyI CCWWGG 5 cut(s) 316, 1116, 1735, 2160, 2773
TaaI ACNGT 7 cut(s) 612, 619, 823, 1489, 2313, 2326, 2811
TaiI ACGT 1 cut(s) 1848
TatI WGTACW 3 cut(s) 555, 818, 2653
TauI GCSGC 3 cut(s) 377, 986, 1181
TfiI GAWTC 6 cut(s) 43, 568, 595, 854, 1247, 1939
TscAI CASTG 4 cut(s) 498, 807, 904, 2571
TseFI GTSAC 2 cut(s) 577, 2566
Tsp45I GTSAC 2 cut(s) 577, 2566
TspDTI ATGAA 7 cut(s) 121, 1395, 1577, 1959, 2027, 2258, 2612
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 4 cut(s) 498, 807, 904, 2571
Van91I CCANNNNNTGG 2 cut(s) 2585, 2687
Vha464I CTTAAG 2 cut(s) 905, 2183
VpaK11BI GGWCC 2 cut(s) 880, 1396
XagI CCTNNNNNAGG 3 cut(s) 1403, 2051, 2777
XapI RAATTY 4 cut(s) 1894, 1905, 1931, 2612
XceI RCATGY 2 cut(s) 719, 1092
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XmaJI CCTAGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 614
XmnI GAANNNNTTC 2 cut(s) 1239, 2087
ZraI GACGTC 1 cut(s) 1846
ZrmI AGTACT 1 cut(s) 820
Zsp2I ATGCAT 1 cut(s) 2669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.