Prupe.8G033800_v2.0.a1

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000856
Physical Location & Seq
Forward (+)
3126679 .. 3131708
5030 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G033800.3

Sequence Viewer

Length: 2949 bp
ATGGTGTTCATCGCATCCCCCAACCACAAAACCCTAACCCTAAACCTAAACCCAAACACCACCACCCTCCAAGCTCTGAAATTCCAAATTGAACAAATTTCCAACGTACCCATCTCTCACCAGCGCCTATTCATCTCCCAAAGCCTCCAATTGTTGACCCAAAGAGACTCCACCCTCCTCGCTGACCTTGGCATCAAACCCTACTCTACCCTAACCCTCCACGTCCCCTTCTTCGGTGGCACCCTACCCCACAAAAATCCCAAACCCCGCCTTGATTTCCTCAATTCCAAGCCTCCTGAGGGTTATGTCGCTGGGCTTGGCCGTGGTGCTTCTGGGTTCACCACAAGGTCCGACATTGGGCCTGCCCGATCTGCCCCCGAGCTGCCCGATAGGGCAATTGGGCAGCTTGAGGAAGCAGGGGAGGAAAAAGGGTACGATGAGAATCAGCAATTTGATGATTTTGAAGGCAACGATGTTGGGTTGTTGGCACCAGATGCCAAACTGGATGAAGATGATGAGAAGGCTGATGCAATGTGGAAAGCAGTTGATGAGAGAATGGACTCCAGGAGAAAGGACAGGAGAGAGGCTCTGTTAAGAGAAGAGATTGAAAAGTACAGAGCTTCCAATCCCAAGATTACAGAGCAGTTTGCAAGTTTGAAGAGGAATTTGCACACATTGTCTGCCCAAGAATGGGAGAGTATACCTGAAATTGGGGATTATTCAATGAGAAACAAGAAGAGGAGGTTTGAGAGCTTTGTGCCGGTGCTGGATACCCTTTTGGAGAAGGCAACGCAGGAGAAAGAGCTTGTTACTGCAATAGATCCCACTAGTACAGATTTGACTGCCGTGAGGCAGGGCAGAGATATAGTGTTGTCTTTGAAATTGGATAGGATTTCGGATTCTGTCTTGGGGTTGACAGTTGTTGACCCAAAAGGGTATCTTACTGATCTTAAAAGTATGAGCATCACAAGTAATACAGACGTTCATGATAAAAACAAGGCTAGATTGTTGATGACGAGTTTAATGAAGTCAAATCCTAAGAACCCACGTGTGTGGATTTCGGCAGCAAGGTTTGAGGAAGTGGCAGGAAAGATGAAGGCAGCCAGGAAATTGATTCAGGAAGGGTGTGATGAGTGCCCTAAGAGTGAGGATGTGTGGTTGGAGGCTTGTAGGCTTGCTAGCCCCAAAGATGCTAAGGCTGTTATTACTAAGGGAGTTAAATTTATTCCCAATTCAGTCAACTTGTGGATGGAGGCTGCGAAATTGGAGCGTGATGATTTGAACAAGAGCAGGGTCTTGAGGAAAGGGTTGGAACACATTCCTGATTCTGTTAGGCTGTGGAAGGCGGTCGTGGATCTAGCGAATGAGGAGGATGCTAGAAGTTTGCTCAAAAGGGCTGTGGAGTGTTGTCCATTGCACATTGAATTCTGGCTTGCACTCACAAGATTGGAAACTTATGAGAACGCCAAGAAGGTCCTCAATAAGGCAAGGGAGAATCTATCGGAGGAGCCTGCAATTTGGATCACGGCAGCAAAGTTGGAAGAAGCTAATGGGAATGTGTCCATGGTTGGGAAGATTATTGAAAGAGGTATAAGGGCTTTGCAAAAAACAGCGGTTATTATTGATAGAGAAGCATGGATGAAAGAGGCTGAAGCTGCTGAACGTGCAGGGTCTATAATGACTTGCCAAGCTATCATTCGGAGCGCAATTGGGATTGGTGTGGAGGAGGAAGATAGGAAGAGGACATGGGTTTCTGATGCAGAGGACTTCATGAAAAAAGGTTCCATTGAAACAGCCCGAGCAATTTATGCGCATGCACTTACTGTCTTTTTAACCAAGAAGAGCATATGGAGGAAAGCAGCTCAGCTTGAAAAGAGCCATGGTTCTAGGGAATCTCTTGTTGCTTTGCTTCGTAAAGCAGTGACATATTGCCCACAGGCTGAAAACTTGTGGCTTTTTGGTGCTAAGGAGAAGTGGCTTTCAGGGGACGTGCCTGCTGCCCGTGCAATCCTCCAAGAAGCTTATGCTGCCGTTCCCAACTCTCAAGAAATTTGGCTTGCTGCGTTTAAACTTGAGTTTGAGAATCACGAATCCGAGAGAGCTAAGATGCTTCTTGCCAAAGCCCGAGAAAGGGGAGGTAACGAAAGAGTATGGATGAAATCTGCAATTGTTGAGAGGGAATTAGGGAACATTGATGAGGAGAGGAAGTTTCTTGCTGAAGGCTTGAAGCGCTTCCCATCATTCTTTAAATTGTGGTTAATGCTTGGACAGCTAGAGGAACGGCTTGATCATTTGGAAAAAGCCAAAAAGGCCTATCACTCAGGTCTGAAGCACTGCCCCAATTCTCTACAACTCTGGCTTTCTCTCGCTAATCTAGAGGAGAAAATGATTGGGCTGAGTAAAGCTCGCGCAGTTCTCACAATTGCCAGGAAGAAGAACCCTCAGAACCCTGAACTGTGGCTTGCTTCTGTTCGAGCTGAATTGAGGCATGGCAAGAAGAAGGAATCTGATATTTTGATGGCAAAGGCTTTGCAGGAGTGTCCCAATAGTGGTATCTTGTGGGCAGCAGCTCTCGAGATGGTAGCTCGTCCCCAACGGAAGGCAAAGAGTAAAGATGCCCTTGAGAAATGTCGTCATGATCCCCATGTTGTTGCTGCTGTGGCCAAGTTATTATGGCATGACAGGAAGTTGGACAAAGCTAGGAATTGGCTCAACATGGCAGTAATGTTTGCCCCCGATATTGGGGATTTTTGGGCTTTATACTACAAATTTGAACTTCAGCATGGTACTGAGGAGAACCAAAAGGATGTATTGAACAGATGCATTGCTGCAGGGCCAAAGCATGGAGAAAAATGGCAACCTATTTCAAAGGCCGTGGAGAACTCCCATCAACCAATTGAAGCTATCTTGAAGAAAGTTGTGGCGGCAGCAGAAAATAATAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

983

Amino Acids

110.89

Weight (kDa)

8.88

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1812
AccB1I GGYRCC 2 cut(s) 239, 487
AccB7I CCANNNNNTGG 1 cut(s) 2843
AccI GTMKAC 1 cut(s) 700
AccII CGCG 1 cut(s) 2409
AciI CCGC 4 cut(s) 268, 1346, 1613, 2924
AclWI GGATC 4 cut(s) 815, 1362, 1529, 2633
AcoI YGGCCR 2 cut(s) 319, 2661
AcsI RAATTY 7 cut(s) 80, 96, 664, 1220, 1424, 2049, 2768
AcuI CTGAAG 4 cut(s) 1671, 2238, 2348, 2762
AcvI CACGTG 1 cut(s) 1049
AfaI GTAC 5 cut(s) 108, 434, 614, 832, 2788
AfeI AGCGCT 1 cut(s) 2231
AflIII ACRYGT 1 cut(s) 1048
AhlI ACTAGT 1 cut(s) 827
AjiI CACGTC 2 cut(s) 223, 1990
AjnI CCWGG 3 cut(s) 563, 1103, 2426
AjuI GAANNNNNNNTTGG 2 cut(s) 1680, 1712
AleI CACNNNNGTG 1 cut(s) 1051
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 4 cut(s) 815, 1362, 1529, 2633
Ama87I CYCGRG 4 cut(s) 377, 1797, 2124, 2573
Aor51HI AGCGCT 1 cut(s) 2231
AoxI GGCC 6 cut(s) 319, 359, 2310, 2661, 2834, 2871
ApoI RAATTY 7 cut(s) 80, 96, 664, 1220, 1424, 2049, 2768
Asp700I GAANNNNTTC 2 cut(s) 1317, 2231
AspLEI GCGC 5 cut(s) 126, 1706, 1813, 2232, 2411
AspS9I GGNCC 4 cut(s) 348, 359, 1474, 2834
AsuHPI GGTGA 2 cut(s) 110, 331
AsuNHI GCTAGC 1 cut(s) 1178
AvaI CYCGRG 4 cut(s) 377, 1797, 2124, 2573
AvaII GGWCC 2 cut(s) 348, 1474
AxyI CCTNAGG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 1139
BalI TGGCCA 1 cut(s) 2663
BanI GGYRCC 2 cut(s) 239, 487
BbrPI CACGTG 1 cut(s) 1049
BccI CCATC 6 cut(s) 119, 1243, 2245, 2512, 2572, 2895
BceAI ACGGC 6 cut(s) 306, 830, 1542, 2015, 2297, 2858
BciT130I CCWGG 3 cut(s) 565, 1105, 2428
BciVI GTATCC 1 cut(s) 763
BclI TGATCA 1 cut(s) 2287
BcoDI GTCTC 1 cut(s) 159
BcuI ACTAGT 1 cut(s) 827
BfaI CTAG 9 cut(s) 828, 1002, 1179, 1358, 1377, 1887, 2273, 2375, 2700
BfmI CTRYAG 1 cut(s) 2829
BfoI RGCGCY 2 cut(s) 127, 2233
BfuI GTATCC 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 2309
BlpI GCTNAGC 1 cut(s) 1863
Bme1390I CCNGG 3 cut(s) 565, 1105, 2428
Bme18I GGWCC 2 cut(s) 348, 1474
BmeT110I CYCGRG 4 cut(s) 377, 1797, 2124, 2573
BmgBI CACGTC 2 cut(s) 223, 1990
BmgT120I GGNCC 4 cut(s) 348, 359, 1474, 2834
BmiI GGNNCC 4 cut(s) 241, 489, 1509, 1783
BmrFI CCNGG 3 cut(s) 565, 1105, 2428
BmtI GCTAGC 1 cut(s) 1182
BplI GAGNNNNNCTC 4 cut(s) 571, 603, 2389, 2421
BpmI CTGGAG 1 cut(s) 547
Bpu10I CCTNAGC 2 cut(s) 1194, 1965
Bpu1102I GCTNAGC 1 cut(s) 1863
BpuEI CTTGAG 5 cut(s) 428, 1318, 2028, 2093, 2642
BsaAI YACGTR 1 cut(s) 1049
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 5 cut(s) 187, 322, 1563, 1879, 2874
BsaXI ACNNNNNCTCC 2 cut(s) 2192, 2222
Bse118I RCCGGY 1 cut(s) 760
Bse1I ACTGG 1 cut(s) 507
Bse21I CCTNAGG 1 cut(s) 297
Bse3DI GCAATG 3 cut(s) 537, 1412, 2823
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 3 cut(s) 565, 1105, 2428
BseDI CCNNGG 5 cut(s) 187, 322, 1563, 1879, 2874
BseGI GGATG 8 cut(s) 14, 511, 1156, 1254, 1378, 1644, 2160, 2812
BseJI GATNNNNATC 1 cut(s) 441
BseMI GCAATG 3 cut(s) 537, 1412, 2823
BseMII CTCAG 6 cut(s) 288, 1877, 2334, 2387, 2456, 2781
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 8 cut(s) 167, 754, 1382, 1520, 1739, 2213, 2393, 2807
BseSI GKGCMC 1 cut(s) 1139
BseYI CCCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 1686
Bsh1236I CGCG 1 cut(s) 2409
Bsh1285I CGRYCG 1 cut(s) 1350
BshFI GGCC 6 cut(s) 321, 361, 2312, 2663, 2836, 2873
BshNI GGYRCC 2 cut(s) 239, 487
BsiEI CGRYCG 1 cut(s) 1350
BsiHKCI CYCGRG 4 cut(s) 377, 1797, 2124, 2573
BsiSI CCGG 1 cut(s) 761
BslFI GGGAC 4 cut(s) 209, 2000, 2526, 2574
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 4 cut(s) 209, 2000, 2526, 2574
BsnI GGCC 6 cut(s) 321, 361, 2312, 2663, 2836, 2873
BsoBI CYCGRG 4 cut(s) 377, 1797, 2124, 2573
Bsp1286I GDGCHC 1 cut(s) 1139
Bsp143I GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
Bsp1720I GCTNAGC 1 cut(s) 1863
Bsp19I CCATGG 2 cut(s) 1563, 1879
BspACI CCGC 4 cut(s) 268, 1346, 1613, 2924
BspANI GGCC 6 cut(s) 321, 361, 2312, 2663, 2836, 2873
BspCNI CTCAG 6 cut(s) 289, 1876, 2333, 2388, 2455, 2782
BspFNI CGCG 1 cut(s) 2409
BspHI TCATGA 3 cut(s) 985, 1770, 2635
BspLI GGNNCC 4 cut(s) 241, 489, 1509, 1783
BspMAI CTGCAG 1 cut(s) 2833
BspOI GCTAGC 1 cut(s) 1182
BspPI GGATC 4 cut(s) 815, 1362, 1529, 2633
BspQI GCTCTTC 1 cut(s) 1835
BspT107I GGYRCC 2 cut(s) 239, 487
BsrDI GCAATG 3 cut(s) 537, 1412, 2823
BsrFI RCCGGY 1 cut(s) 760
BsrI ACTGG 1 cut(s) 507
BssAI RCCGGY 1 cut(s) 760
BssECI CCNNGG 5 cut(s) 187, 322, 1563, 1879, 2874
BssMI GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
BssNAI GTATAC 1 cut(s) 701
BssT1I CCWWGG 3 cut(s) 187, 1563, 1879
Bst1107I GTATAC 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 565, 1105, 2428
Bst4CI ACNGT 4 cut(s) 919, 1825, 2457, 2946
Bst6I CTCTTC 5 cut(s) 594, 653, 731, 1733, 1835
BstAPI GCANNNNNTGC 2 cut(s) 494, 1808
BstBAI YACGTR 1 cut(s) 1049
BstDSI CCRYGG 4 cut(s) 322, 1563, 1879, 2874
BstENI CCTNNNNNAGG 1 cut(s) 1481
BstF5I GGATG 8 cut(s) 14, 511, 1156, 1254, 1378, 1644, 2160, 2812
BstFNI CGCG 1 cut(s) 2409
BstH2I RGCGCY 2 cut(s) 127, 2233
BstHHI GCGC 5 cut(s) 126, 1706, 1813, 2232, 2411
BstKTI GATC 7 cut(s) 371, 823, 949, 1357, 1524, 2290, 2641
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
BstMCI CGRYCG 1 cut(s) 1350
BstNI CCWGG 3 cut(s) 565, 1105, 2428
BstNSI RCATGY 1 cut(s) 1817
BstSCI CCNGG 3 cut(s) 563, 1103, 2426
BstSFI CTRYAG 1 cut(s) 2829
BstSLI GKGCMC 1 cut(s) 1139
BstUI CGCG 1 cut(s) 2409
BstX2I RGATCY 2 cut(s) 820, 1354
BstXI CCANNNNNNTGG 1 cut(s) 1053
BstYI RGATCY 2 cut(s) 820, 1354
BstZ17I GTATAC 1 cut(s) 701
Bsu36I CCTNAGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 6 cut(s) 321, 361, 2312, 2663, 2836, 2873
BtgI CCRYGG 4 cut(s) 322, 1563, 1879, 2874
BtrI CACGTC 2 cut(s) 223, 1990
BtsCI GGATG 8 cut(s) 14, 511, 1156, 1254, 1378, 1644, 2160, 2812
BtsI GCAGTG 2 cut(s) 1926, 2332
BtsIMutI CAGTG 2 cut(s) 1926, 2332
CciI TCATGA 3 cut(s) 985, 1770, 2635
CfoI GCGC 5 cut(s) 126, 1706, 1813, 2232, 2411
Cfr10I RCCGGY 1 cut(s) 760
Cfr13I GGNCC 4 cut(s) 348, 359, 1474, 2834
Csp6I GTAC 5 cut(s) 107, 433, 613, 831, 2787
CspCI CAANNNNNGTGG 2 cut(s) 2856, 2891
CviQI GTAC 5 cut(s) 107, 433, 613, 831, 2787
DpnI GATC 7 cut(s) 370, 822, 948, 1356, 1523, 2289, 2640
DpnII GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
DraI TTTAAA 2 cut(s) 2068, 2248
EaeI YGGCCR 2 cut(s) 319, 2661
Eam1104I CTCTTC 5 cut(s) 594, 653, 731, 1733, 1835
EarI CTCTTC 5 cut(s) 594, 653, 731, 1733, 1835
Eco130I CCWWGG 3 cut(s) 187, 1563, 1879
Eco147I AGGCCT 1 cut(s) 2312
Eco47I GGWCC 2 cut(s) 348, 1474
Eco47III AGCGCT 1 cut(s) 2231
Eco57I CTGAAG 4 cut(s) 1671, 2238, 2348, 2762
Eco72I CACGTG 1 cut(s) 1049
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 4 cut(s) 377, 1797, 2124, 2573
EcoNI CCTNNNNNAGG 1 cut(s) 1481
EcoO109I RGGNCCY 1 cut(s) 1474
EcoRI GAATTC 1 cut(s) 1424
EcoRII CCWGG 3 cut(s) 563, 1103, 2426
EcoT14I CCWWGG 3 cut(s) 187, 1563, 1879
EcoT22I ATGCAT 1 cut(s) 2825
ErhI CCWWGG 3 cut(s) 187, 1563, 1879
FalI AAGNNNNNCTT 4 cut(s) 924, 956, 2604, 2636
FaqI GGGAC 4 cut(s) 209, 2000, 2526, 2574
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 1 cut(s) 1847
FbaI TGATCA 1 cut(s) 2287
FblI GTMKAC 1 cut(s) 700
FokI GGATG 7 cut(s) 518, 1163, 1261, 1385, 1651, 2167, 2819
FspAI RTGCGCAY 1 cut(s) 1812
FspBI CTAG 9 cut(s) 828, 1002, 1179, 1358, 1377, 1887, 2273, 2375, 2700
FspI TGCGCA 1 cut(s) 1812
GlaI GCGC 5 cut(s) 125, 1705, 1812, 2231, 2410
GsaI CCCAGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 547
HaeII RGCGCY 2 cut(s) 127, 2233
HaeIII GGCC 6 cut(s) 321, 361, 2312, 2663, 2836, 2873
HapII CCGG 1 cut(s) 761
HhaI GCGC 5 cut(s) 126, 1706, 1813, 2232, 2411
Hin6I GCGC 5 cut(s) 124, 1704, 1811, 2230, 2409
HinP1I GCGC 5 cut(s) 124, 1704, 1811, 2230, 2409
HincII GTYRAC 4 cut(s) 156, 915, 925, 1240
HindII GTYRAC 4 cut(s) 156, 915, 925, 1240
HindIII AAGCTT 1 cut(s) 2019
HpaII CCGG 1 cut(s) 761
HphI GGTGA 2 cut(s) 110, 331
Hpy166II GTNNAC 6 cut(s) 156, 339, 701, 915, 925, 1240
Hpy8I GTNNAC 6 cut(s) 156, 339, 701, 915, 925, 1240
HpyCH4III ACNGT 4 cut(s) 919, 1825, 2457, 2946
HpyCH4IV ACGT 6 cut(s) 105, 222, 981, 1048, 1663, 1989
HpySE526I ACGT 6 cut(s) 105, 222, 981, 1048, 1663, 1989
HspAI GCGC 5 cut(s) 124, 1704, 1811, 2230, 2409
Ksp22I TGATCA 1 cut(s) 2287
Kzo9I GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
LguI GCTCTTC 1 cut(s) 1835
LmnI GCTCC 3 cut(s) 1267, 1507, 1701
MaeI CTAG 9 cut(s) 828, 1002, 1179, 1358, 1377, 1887, 2273, 2375, 2700
MaeII ACGT 6 cut(s) 105, 222, 981, 1048, 1663, 1989
MaeIII GTNAC 3 cut(s) 808, 1921, 2138
MalI GATC 7 cut(s) 370, 822, 948, 1356, 1523, 2289, 2640
MboI GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
MfeI CAATTG 6 cut(s) 149, 396, 1707, 2166, 2421, 2895
MflI RGATCY 2 cut(s) 820, 1354
MhlI GDGCHC 1 cut(s) 1139
MlsI TGGCCA 1 cut(s) 2663
MluNI TGGCCA 1 cut(s) 2663
MlyI GAGTC 2 cut(s) 161, 554
MmeI TCCRAC 6 cut(s) 126, 375, 1140, 1290, 1518, 2670
Mox20I TGGCCA 1 cut(s) 2663
Mph1103I ATGCAT 1 cut(s) 2825
MroXI GAANNNNTTC 2 cut(s) 1317, 2231
MscI TGGCCA 1 cut(s) 2663
MseI TTAA 8 cut(s) 593, 951, 1022, 1218, 1832, 2067, 2247, 2258
MslI CAYNNNNRTG 1 cut(s) 1051
Msp20I TGGCCA 1 cut(s) 2663
MspA1I CMGCKG 1 cut(s) 1613
MspI CCGG 1 cut(s) 761
MspR9I CCNGG 3 cut(s) 565, 1105, 2428
MssI GTTTAAAC 1 cut(s) 2068
MunI CAATTG 6 cut(s) 149, 396, 1707, 2166, 2421, 2895
MvaI CCWGG 3 cut(s) 565, 1105, 2428
MvnI CGCG 1 cut(s) 2409
NcoI CCATGG 2 cut(s) 1563, 1879
NdeI CATATG 1 cut(s) 1847
NdeII GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
NheI GCTAGC 1 cut(s) 1178
NlaIV GGNNCC 4 cut(s) 241, 489, 1509, 1783
NmuCI GTSAC 1 cut(s) 1921
NsbI TGCGCA 1 cut(s) 1812
NsiI ATGCAT 1 cut(s) 2825
NspI RCATGY 1 cut(s) 1817
OliI CACNNNNGTG 1 cut(s) 1051
PaeI GCATGC 1 cut(s) 1817
PaeR7I CTCGAG 1 cut(s) 2573
PagI TCATGA 3 cut(s) 985, 1770, 2635
PceI AGGCCT 1 cut(s) 2312
PciSI GCTCTTC 1 cut(s) 1835
PdmI GAANNNNTTC 2 cut(s) 1317, 2231
PfeI GAWTC 9 cut(s) 442, 899, 1114, 1325, 1495, 1892, 2083, 2090, 2504
PflMI CCANNNNNTGG 1 cut(s) 2843
PfoI TCCNGGA 1 cut(s) 563
PleI GAGTC 2 cut(s) 161, 554
PmaCI CACGTG 1 cut(s) 1049
PmeI GTTTAAAC 1 cut(s) 2068
PmlI CACGTG 1 cut(s) 1049
PpsI GAGTC 2 cut(s) 161, 554
Ppu21I YACGTR 1 cut(s) 1049
PpuMI RGGWCCY 1 cut(s) 1474
Psp5II RGGWCCY 1 cut(s) 1474
Psp6I CCWGG 3 cut(s) 563, 1103, 2426
PspCI CACGTG 1 cut(s) 1049
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 3 cut(s) 563, 1103, 2426
PspN4I GGNNCC 4 cut(s) 241, 489, 1509, 1783
PspPI GGNCC 4 cut(s) 348, 359, 1474, 2834
PspPPI RGGWCCY 1 cut(s) 1474
PstI CTGCAG 1 cut(s) 2833
PsuI RGATCY 2 cut(s) 820, 1354
RsaI GTAC 5 cut(s) 108, 434, 614, 832, 2788
RsaNI GTAC 5 cut(s) 107, 433, 613, 831, 2787
RseI CAYNNNNRTG 1 cut(s) 1051
SapI GCTCTTC 1 cut(s) 1835
SaqAI TTAA 8 cut(s) 593, 951, 1022, 1218, 1832, 2067, 2247, 2258
Sau3AI GATC 7 cut(s) 368, 820, 946, 1354, 1521, 2287, 2638
Sau96I GGNCC 4 cut(s) 348, 359, 1474, 2834
SchI GAGTC 2 cut(s) 161, 554
ScrFI CCNGG 3 cut(s) 565, 1105, 2428
SduI GDGCHC 1 cut(s) 1139
SfcI CTRYAG 1 cut(s) 2829
Sfr274I CTCGAG 1 cut(s) 2573
SinI GGWCC 2 cut(s) 348, 1474
SlaI CTCGAG 1 cut(s) 2573
SmiMI CAYNNNNRTG 1 cut(s) 1051
SmlI CTYRAG 6 cut(s) 407, 1297, 2043, 2072, 2573, 2621
SmoI CTYRAG 6 cut(s) 407, 1297, 2043, 2072, 2573, 2621
SpeI ACTAGT 1 cut(s) 827
SphI GCATGC 1 cut(s) 1817
SseBI AGGCCT 1 cut(s) 2312
SsiI CCGC 4 cut(s) 268, 1346, 1613, 2924
SspMI CTAG 9 cut(s) 828, 1002, 1179, 1358, 1377, 1887, 2273, 2375, 2700
StuI AGGCCT 1 cut(s) 2312
StyD4I CCNGG 3 cut(s) 563, 1103, 2426
StyI CCWWGG 3 cut(s) 187, 1563, 1879
TaaI ACNGT 4 cut(s) 919, 1825, 2457, 2946
TaiI ACGT 6 cut(s) 108, 225, 984, 1051, 1666, 1992
TaqI TCGA 2 cut(s) 2473, 2574
TatI WGTACW 2 cut(s) 612, 830
TauI GCSGC 1 cut(s) 2927
TfiI GAWTC 9 cut(s) 442, 899, 1114, 1325, 1495, 1892, 2083, 2090, 2504
Tru1I TTAA 8 cut(s) 593, 951, 1022, 1218, 1832, 2067, 2247, 2258
Tru9I TTAA 8 cut(s) 593, 951, 1022, 1218, 1832, 2067, 2247, 2258
TscAI CASTG 2 cut(s) 1926, 2339
TseFI GTSAC 1 cut(s) 1921
Tsp45I GTSAC 1 cut(s) 1921
TspDTI ATGAA 9 cut(s) 121, 522, 974, 1040, 1109, 1655, 1759, 1787, 2171
TspGWI ACGGA 1 cut(s) 2611
TspRI CASTG 2 cut(s) 1926, 2339
Van91I CCANNNNNTGG 1 cut(s) 2843
VpaK11BI GGWCC 2 cut(s) 348, 1474
XagI CCTNNNNNAGG 1 cut(s) 1481
XapI RAATTY 7 cut(s) 80, 96, 664, 1220, 1424, 2049, 2768
XbaI TCTAGA 1 cut(s) 2374
XceI RCATGY 1 cut(s) 1817
XhoI CTCGAG 1 cut(s) 2573
XmiI GTMKAC 1 cut(s) 700
XmnI GAANNNNTTC 2 cut(s) 1317, 2231
XspI CTAG 9 cut(s) 828, 1002, 1179, 1358, 1377, 1887, 2273, 2375, 2700
Zsp2I ATGCAT 1 cut(s) 2825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.