Rh6CG207200

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000856
Physical Location & Seq
Reverse (-)
34426553 .. 34433566
7014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG207200.1

Sequence Viewer

Length: 318 bp
ATGAGAGTAATTGATGCTAATGGGCTGATTAGAGGAGTTGGTTGCAACACACATCCTCTTATTCGGCGGCACCCAACCCCCCGCCTCGACTTCCTCAACTCCAAGCCTCCTGCCAATTATGTCGCCGGCCTCGGCCGTGGTGCCACCGGCTTCACCACGCGGTCCGATATCAGGCCGGCCCGCGCCGCTCCCGACTTGCTCGATCGGTCGACGACGACTATCGGCGGGGCTGCAGGGGCGGCCCCGCTTAACGTGAGCCGCGGGAGCAGGAAGCCGGAGGAAGACGACGGCGAGGAGAAGGGTTACGATGAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

105

Amino Acids

11.17

Weight (kDa)

9.03

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 36 - 86 7e-13 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 69, 140
AccBSI CCGCTC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 209
AccII CGCG 3 cut(s) 160, 183, 261
AcoI YGGCCR 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 171
AoxI GGCC 5 cut(s) 127, 133, 173, 177, 240
ApeKI GCWGC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 3 cut(s) 162, 178, 241
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 162
BanI GGYRCC 2 cut(s) 69, 140
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 217
BceAI ACGGC 2 cut(s) 120, 304
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 5 cut(s) 68, 186, 231, 240, 259
BlsI GCNGC 5 cut(s) 69, 187, 232, 241, 260
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 3 cut(s) 162, 178, 241
BmiI GGNNCC 3 cut(s) 71, 142, 243
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 130, 136, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse118I RCCGGY 3 cut(s) 125, 146, 175
BseDI CCNNGG 3 cut(s) 130, 136, 259
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 48, 308
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 3 cut(s) 160, 183, 261
Bsh1285I CGRYCG 3 cut(s) 136, 205, 209
BshFI GGCC 5 cut(s) 129, 135, 175, 179, 242
BshNI GGYRCC 2 cut(s) 69, 140
BsiEI CGRYCG 3 cut(s) 136, 205, 209
BsiSI CCGG 4 cut(s) 126, 147, 176, 275
BslI CCNNNNNNNGG 1 cut(s) 171
BsnI GGCC 5 cut(s) 129, 135, 175, 179, 242
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 5 cut(s) 129, 135, 175, 179, 242
BspFNI CGCG 3 cut(s) 160, 183, 261
BspLI GGNNCC 3 cut(s) 71, 142, 243
BspMAI CTGCAG 1 cut(s) 235
BspT107I GGYRCC 2 cut(s) 69, 140
BsrBI CCGCTC 1 cut(s) 188
BsrFI RCCGGY 3 cut(s) 125, 146, 175
BssAI RCCGGY 3 cut(s) 125, 146, 175
BssECI CCNNGG 3 cut(s) 130, 136, 259
BssMI GATC 1 cut(s) 202
BstC8I GCNNGC 3 cut(s) 127, 177, 181
BstDSI CCRYGG 2 cut(s) 136, 259
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 3 cut(s) 160, 183, 261
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMCI CGRYCG 3 cut(s) 136, 205, 209
BstMWI GCNNNNNNNGC 4 cut(s) 185, 236, 239, 264
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 3 cut(s) 160, 183, 261
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 288
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 5 cut(s) 129, 135, 175, 179, 242
BtgI CCRYGG 2 cut(s) 136, 259
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 127, 177, 181
CfoI GCGC 1 cut(s) 185
Cfr10I RCCGGY 3 cut(s) 125, 146, 175
Cfr13I GGNCC 3 cut(s) 162, 178, 241
Cfr42I CCGCGG 1 cut(s) 262
CpoI CGGWCCG 1 cut(s) 162
CspI CGGWCCG 1 cut(s) 162
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 133
Eco32I GATATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 162
Eco52I CGGCCG 1 cut(s) 133
EcoRV GATATC 1 cut(s) 169
FaiI YATR 1 cut(s) 120
FauI CCCGC 5 cut(s) 89, 188, 218, 252, 254
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 5 cut(s) 68, 186, 231, 240, 259
FokI GGATG 1 cut(s) 39
FseI GGCCGGCC 1 cut(s) 179
Fsp4HI GCNGC 5 cut(s) 68, 186, 231, 240, 259
GlaI GCGC 1 cut(s) 184
GluI GCNGC 5 cut(s) 68, 186, 231, 240, 259
HaeIII GGCC 5 cut(s) 129, 135, 175, 179, 242
HapII CCGG 4 cut(s) 126, 147, 176, 275
HhaI GCGC 1 cut(s) 185
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HpaII CCGG 4 cut(s) 126, 147, 176, 275
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 3 cut(s) 214, 217, 290
HpyAV CCTTC 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 45, 233
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 236, 239, 264
HpySE526I ACGT 1 cut(s) 252
HspAI GCGC 1 cut(s) 183
KroI GCCGGC 2 cut(s) 125, 175
KroNI GCCGGC 2 cut(s) 127, 177
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 2 cut(s) 193, 264
LpnPI CCDG 8 cut(s) 123, 139, 157, 160, 189, 219, 253, 288
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 4
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 204
MbiI CCGCTC 1 cut(s) 188
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 293
MluCI AATT 3 cut(s) 9, 115, 313
MnlI CCTC 8 cut(s) 26, 66, 95, 104, 117, 140, 271, 286
MroNI GCCGGC 2 cut(s) 125, 175
MseI TTAA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 4 cut(s) 126, 147, 176, 275
MvnI CGCG 3 cut(s) 160, 183, 261
MwoI GCNNNNNNNGC 4 cut(s) 185, 236, 239, 264
NaeI GCCGGC 2 cut(s) 127, 177
NdeII GATC 1 cut(s) 202
NgoMIV GCCGGC 2 cut(s) 125, 175
NlaIV GGNNCC 3 cut(s) 71, 142, 243
NmeAIII GCCGAG 1 cut(s) 111
PdiI GCCGGC 2 cut(s) 127, 177
PkrI GCNGC 5 cut(s) 69, 187, 232, 241, 260
Ple19I CGATCG 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 71, 142, 243
PspPI GGNCC 3 cut(s) 162, 178, 241
PstI CTGCAG 1 cut(s) 235
PvuI CGATCG 1 cut(s) 205
RigI GGCCGGCC 1 cut(s) 179
Rsr2I CGGWCCG 1 cut(s) 162
RsrII CGGWCCG 1 cut(s) 162
SacII CCGCGG 1 cut(s) 262
SalI GTCGAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 5 cut(s) 68, 186, 231, 240, 259
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 3 cut(s) 162, 178, 241
SetI ASST 1 cut(s) 255
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 231
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 1 cut(s) 162
Sse9I AATT 3 cut(s) 9, 115, 313
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 87, 201, 209
TaqII GACCGA 1 cut(s) 195
TasI AATT 3 cut(s) 9, 115, 313
TauI GCSGC 4 cut(s) 70, 188, 242, 261
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.