FvH4_2g13420

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000856
Physical Location & Seq
Reverse (-)
11726196 .. 11729270
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13420.t1

Sequence Viewer

Length: 3075 bp
ATGGTGTTCATCACATCCCCGAACCACAAAACCCTAAACCTGAATCTCAACCCGAAAACCACCACCCTCGAAACCCTAAAGCTCCAAATCGAACAAACCTCCCACATCCCCATCTCCCAGCAGCGCCTCTTCATCTCCCAAAGCCTCCAACTCCTCACCCAATCCGACTCCACCCTCCTCTCCGACCTCAACATCTCCCCCCTCTCAACCCTAACCCTCCACATCCCCCTCTTCGGCGGCACCCAACCCCCCGCCGTCCCCAAACCCCGCCTCGATTTCCTCAACTCCAAGCCCCCCGCCAACTATGTCGCCGGTCTCGGCCGTGGCGCCACCGGCTTCACCACCCGTTCCGATATCGGACCTGCCCGCGCCGCTCCTGACTTGCCCGATCGCTCCGCCACGACTATCGGCGGGGCTGCCGGGGCTGCTCCGCCTGGGGCGGGGCGTGGCCGCGGGAAGCCGGAGGAGGAGGAGGAAGACGACGGCGAGGAGAAAGGCTACGATGAGAATCAGAAGTTTGATGAGTTCGAAGGAAACGACGTCGGTTTGTTCGCGTCGGCGGAGTACGACGACGAGGACAAGGAGGCCGACGCTGTGTGGGAGGCGATTGAGCAGAGGATGGACTCGAGGAGGAAGGACAGGAGGGAAGCGAGGTTGAAGCAAGAGATTGAGAAGTACAGAGCTTCAAATCCCAAAATCACGGAGCAGTTTGCGAATTTGAAGAGGCAGCTGTATACTGTTTCGGCTGAGGAATGGGATAAGATACCGGACATTGGGGATTATTCGGCCAGGAACAAGAAGAGGAAGTTTGAGAGCTTTGTGCCGGTGCCGGATACTCTTTTCGAGAAGGCTAGGCAGGAACAGGAGCATGTTACTGCATTGGACCCCAAGAGTAGGGCGGCCACTGGTACAGAGACGCCGTGGTCGCAAACGCCGGTTACAGATTTGACCGCAGTTGGTGATGGCAGGAGTACTGTGTTGTCTTTGAAATTAGATAGGCTTTCGGATTCTGTTTCAGGGCTGACAGTCGTGGACCCTAAGGGGTATCTTACTGATCTTAAGAGTATGAAGATTACTAGTGATGCGGAGATTTCGGATATAAAGAAGGCTAGGTTGTTGCTCAAGAGTGTGACACAGACTAATCCGAAGCATCCACCTGGTTGGATTGCGGCTGCGAGGTTGGAGGAAGTGGCGGGGAAGATACAGGCAGCAAGGCAATTGATCCAGAAAGGGTGTGAGGAATGTCCCAAGAGTGAGGATGTTTGGTTGGAGGCATGTCGGCTTGCCAGTCCTGACGGAGCCAAGGCTGTGATTGCTGCTGGAGTAAAGTCAATACCCAATTCAGTCAAGCTGTGGATGCAGGCGGCGAAATTGGAGCATGATGACTCGAATAAGAGTAGGGTGTTGAGGAAAGGGTTGGAACACATTCCTGATTCTGTTAGGCTATGGAAGGCGGTGGTGGAGCTGGCGAATGAGGAGGATGCCAGACTTTTGCTTCATAGGGCTGTGGAGTGTTGTCCCTTGCACATAGAGTTGTGGCTTGCTCTAGCGAGATTGGAGACTTATGACAATGCCAAGAAGGTCCTTAACAAGGCCCGGGAGAAGCTTTCAAAAGAGCCTGCCATTTGGATTACTGCAGCAAAGTTGGAAGAAGCTAATGGGAATACATCAGTTGGGAAGATTATTGAAAGGGGTATAAGGGCTCTGCAAAGAGAGGGATTGGTGATTGATAGAGAAGCATGGATGAAGGAGGCTGAAGCTGCCGAGCGTGCAGGGTCTGTGGCAACTTGCCAAGCCATTATTCGGAACACTATTGGGATTGGCGTGGAGGAAGAAGATAGGAAGAGGACATGGGTTGCTGATGCAGAGGAGTGCAAGAAACGTGGTTCCATTGAAACAGCCAGAGCTATCTATGCTCATGCACTTACTGTCTTCTTAAGTAAGAAGAGCATATGGCTTAAAGCAGCACAGCTCGAAAAGAGTCATGGAACTAGGGAATCTCTTGATGCCCTGCTTCGTAAAGCAGTTACCTACCGACCACAGGCGGAAGTCTTATGGCTTATGGGTGCGAAGGAGAAGTGGCTTGCTGGGGACGTATTTAATGCCCGTAAAATCCTCGAAGAAGCTTATGCTGCCATTCCGAATTCTGAAGAGATTTGGCTTGCTGCATTTAAGCTTGAATTTGAGAATCATGAACCTGAGAGAGCTAGGTTGCTTCTTGCTAAAGCCCGAGAAAAGGGAGGAACAGAGAGAGTATGGATGAAATCAGCAATCGTCGAAAGAGAATTAGGGAACCTCGATGAGGAGAGGAAGTTGCTTGCTGAAGGATTGAAACGCTTCCCTTCGTTCTTTAAATTGTGGTTGATGCTTGGACAGCTAGAGGAACGGCTTAACCATTTGGACAAAGCCAAGGAGACTTATGACTCGGGTCTTAAGCACTGCTCCAATTCTATACCACTCTGGCTTTCTCTTGCAAATCTTGAAGAGAAGATGAATGGGCTGAGTAAAGCTCGTGCAGTTCTTACGATGGCCAGGAAGAAGAATCCTCAGAACCCTGAACTGTGGCTTGCTGCTGTTCGAGCTGAATTGAGGCATGGTAATAAGAAGGAAGCTGATATTTTGATGGCAAAGGCCTTGCAGGAGTGTCCCAATAGTGGTATCTTGTGGGCAGCTTCTATTGAGATGGTACCGCGTCCCCAAAGGAAGACCAAAAGTATGGATGCCCTCAAGAAATGTGATCACGATCCCCATGTCATTGCTGCTGTGGCCAAGTTATTCTGGCTCGACAGGAAGGTTGACAAAGCTAGGACTTGGCTCAACAGGGCAGTGACACTTGCCCCAGATATTGGAGATTTCTGGGCTTTATACTACAAATTTGAACTTCAGAATGGGACTGACGAGAACCAGAAGGATGTACTAAAACGATGCATTGCTGCAGAACCAAAGCATGGTGAAAAATGGCAACCTATTTCAAAGGCAGTGGAGAACTCTCACCAACCAACAGAGGCTATCTTGAAGAAGGTAGTTGTTGCCCTTGGCAAGGAAGAGAGTGCAGCTGAAAATAATAGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

1025

Amino Acids

114.51

Weight (kDa)

8.21

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 98 - 264 1.9e-52 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 922
AatII GACGTC 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 2686
AccB1I GGYRCC 4 cut(s) 239, 326, 826, 2686
AccB7I CCANNNNNTGG 2 cut(s) 2846, 2948
AccBSI CCGCTC 1 cut(s) 374
AccI GTMKAC 1 cut(s) 734
AccII CGCG 4 cut(s) 369, 453, 554, 2692
AclWI GGATC 2 cut(s) 1216, 2738
AcoI YGGCCR 6 cut(s) 319, 448, 786, 900, 2529, 2766
AcsI RAATTY 4 cut(s) 715, 2143, 2180, 2873
AcuI CTGAAG 4 cut(s) 1776, 2169, 2343, 2867
AcyI GRCGYC 3 cut(s) 327, 540, 917
AfaI GTAC 6 cut(s) 566, 677, 910, 973, 2688, 2916
AflII CTTAAG 3 cut(s) 1058, 1936, 2432
AhlI ACTAGT 1 cut(s) 1076
AjnI CCWGG 4 cut(s) 433, 788, 1156, 2531
AjuI GAANNNNNNNTTGG 2 cut(s) 1785, 1817
Alw26I GTCTC 4 cut(s) 320, 908, 1553, 2408
AlwI GGATC 2 cut(s) 1216, 2738
AlwNI CAGNNNCTG 1 cut(s) 1778
Ama87I CYCGRG 4 cut(s) 625, 1596, 2229, 2425
AoxI GGCC 9 cut(s) 319, 448, 585, 786, 900, 1593, 2529, 2631, 2766
ApoI RAATTY 4 cut(s) 715, 2143, 2180, 2873
Asp700I GAANNNNTTC 2 cut(s) 1425, 2336
Asp718I GGTACC 1 cut(s) 2686
AspLEI GCGC 3 cut(s) 126, 329, 371
AspS9I GGNCC 5 cut(s) 359, 883, 1033, 1582, 1594
AsuC2I CCSGG 3 cut(s) 421, 1597, 1598
AsuHPI GGTGA 6 cut(s) 148, 331, 971, 1735, 2963, 2984
AsuII TTCGAA 1 cut(s) 528
AvaI CYCGRG 4 cut(s) 625, 1596, 2229, 2425
AvaII GGWCC 4 cut(s) 359, 883, 1033, 1582
AxyI CCTNAGG 1 cut(s) 1038
BalI TGGCCA 2 cut(s) 2531, 2768
BanI GGYRCC 4 cut(s) 239, 326, 826, 2686
BanII GRGCYC 1 cut(s) 1705
BauI CACGAG 1 cut(s) 2511
BbsI GAAGAC 3 cut(s) 483, 1924, 2711
BbvCI CCTCAGC 1 cut(s) 747
BccI CCATC 6 cut(s) 119, 613, 956, 2521, 2617, 2677
BceAI ACGGC 5 cut(s) 239, 306, 499, 904, 2402
BciT130I CCWGG 4 cut(s) 435, 790, 1158, 2533
BciVI GTATCC 1 cut(s) 826
BclI TGATCA 1 cut(s) 2737
BcnI CCSGG 3 cut(s) 421, 1597, 1598
BcoDI GTCTC 4 cut(s) 320, 908, 1553, 2408
BcuI ACTAGT 1 cut(s) 1076
BfaI CTAG 8 cut(s) 852, 1077, 1110, 1547, 1992, 2208, 2378, 2805
BfmI CTRYAG 2 cut(s) 1635, 2934
BfoI RGCGCY 2 cut(s) 127, 330
BfrI CTTAAG 3 cut(s) 1058, 1936, 2432
BfuAI ACCTGC 1 cut(s) 370
BfuI GTATCC 1 cut(s) 826
BmcAI AGTACT 1 cut(s) 973
Bme1390I CCNGG 7 cut(s) 421, 435, 790, 1158, 1597, 1598, 2533
Bme18I GGWCC 4 cut(s) 359, 883, 1033, 1582
BmeT110I CYCGRG 4 cut(s) 625, 1596, 2229, 2425
BmgT120I GGNCC 5 cut(s) 359, 883, 1033, 1582, 1594
BmiI GGNNCC 9 cut(s) 241, 328, 828, 885, 1035, 1300, 1888, 2294, 2688
BmrFI CCNGG 7 cut(s) 421, 435, 790, 1158, 1597, 1598, 2533
BmsI GCATC 9 cut(s) 1072, 1159, 1347, 1471, 1852, 1996, 2355, 2710, 2915
BoxI GACNNNNGTC 1 cut(s) 2427
BpiI GAAGAC 3 cut(s) 483, 1924, 2711
BplI GAGNNNNNCTC 2 cut(s) 2494, 2526
BpmI CTGGAG 1 cut(s) 1341
Bpu10I CCTNAGC 1 cut(s) 747
Bpu14I TTCGAA 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 1106, 2711
BpuMI CCSGG 3 cut(s) 421, 1597, 1598
BsaBI GATNNNNATC 2 cut(s) 507, 2742
BsaHI GRCGYC 3 cut(s) 327, 540, 917
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 9 cut(s) 322, 420, 434, 451, 920, 1302, 1596, 2409, 3034
BsaWI WCCGGW 1 cut(s) 766
BsaXI ACNNNNNCTCC 2 cut(s) 2297, 2327
Bse118I RCCGGY 4 cut(s) 311, 332, 823, 934
Bse1I ACTGG 2 cut(s) 910, 1287
Bse21I CCTNAGG 1 cut(s) 1038
Bse3DI GCAATG 2 cut(s) 2754, 2928
Bse8I GATNNNNATC 2 cut(s) 507, 2742
BseBI CCWGG 4 cut(s) 435, 790, 1158, 2533
BseDI CCNNGG 9 cut(s) 322, 420, 434, 451, 920, 1302, 1596, 2409, 3034
BseJI GATNNNNATC 2 cut(s) 507, 2742
BseMI GCAATG 2 cut(s) 2754, 2928
BseMII CTCAG 4 cut(s) 738, 2190, 2492, 2561
BseNI ACTGG 2 cut(s) 910, 1287
BseX3I CGGCCG 1 cut(s) 319
BseYI CCCAGC 2 cut(s) 117, 2087
BsgI GTGCAG 3 cut(s) 1791, 2535, 3072
Bsh1236I CGCG 4 cut(s) 369, 453, 554, 2692
Bsh1285I CGRYCG 2 cut(s) 322, 391
BshFI GGCC 9 cut(s) 321, 450, 587, 788, 902, 1595, 2531, 2633, 2768
BshNI GGYRCC 4 cut(s) 239, 326, 826, 2686
BsiEI CGRYCG 2 cut(s) 322, 391
BsiHKCI CYCGRG 4 cut(s) 625, 1596, 2229, 2425
BsiSI CCGG 9 cut(s) 312, 333, 420, 461, 767, 824, 830, 935, 1597
BslFI GGGAC 7 cut(s) 242, 1230, 1503, 2105, 2631, 2679, 2905
BsmAI GTCTC 4 cut(s) 320, 908, 1553, 2408
BsmBI CGTCTC 1 cut(s) 908
BsmFI GGGAC 7 cut(s) 242, 1230, 1503, 2105, 2631, 2679, 2905
BsnI GGCC 9 cut(s) 321, 450, 587, 788, 902, 1595, 2531, 2633, 2768
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 4 cut(s) 625, 1596, 2229, 2425
Bsp119I TTCGAA 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 1705
Bsp143I GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
BspANI GGCC 9 cut(s) 321, 450, 587, 788, 902, 1595, 2531, 2633, 2768
BspCNI CTCAG 4 cut(s) 739, 2191, 2493, 2560
BspFNI CGCG 4 cut(s) 369, 453, 554, 2692
BspHI TCATGA 1 cut(s) 2191
BspLI GGNNCC 9 cut(s) 241, 328, 828, 885, 1035, 1300, 1888, 2294, 2688
BspMAI CTGCAG 2 cut(s) 1639, 2938
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 1216, 2738
BspQI GCTCTTC 1 cut(s) 1940
BspT104I TTCGAA 1 cut(s) 528
BspT107I GGYRCC 4 cut(s) 239, 326, 826, 2686
BspTI CTTAAG 3 cut(s) 1058, 1936, 2432
BspTNI GGTCTC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 2754, 2928
BsrFI RCCGGY 4 cut(s) 311, 332, 823, 934
BsrI ACTGG 2 cut(s) 910, 1287
BssAI RCCGGY 4 cut(s) 311, 332, 823, 934
BssECI CCNNGG 9 cut(s) 322, 420, 434, 451, 920, 1302, 1596, 2409, 3034
BssMI GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
BssNAI GTATAC 1 cut(s) 735
BssNI GRCGYC 3 cut(s) 327, 540, 917
BssSI CACGAG 1 cut(s) 2511
BssT1I CCWWGG 3 cut(s) 1302, 2409, 3034
Bst1107I GTATAC 1 cut(s) 735
Bst2BI CACGAG 1 cut(s) 2511
Bst2UI CCWGG 4 cut(s) 435, 790, 1158, 2533
Bst4CI ACNGT 6 cut(s) 739, 976, 1027, 1930, 2562, 3072
Bst6I CTCTTC 9 cut(s) 134, 236, 716, 794, 1838, 1940, 2145, 2478, 3039
BstACI GRCGYC 3 cut(s) 327, 540, 917
BstAFI CTTAAG 3 cut(s) 1058, 1936, 2432
BstBI TTCGAA 1 cut(s) 528
BstDEI CTNAG 5 cut(s) 747, 1038, 2199, 2501, 2547
BstDSI CCRYGG 3 cut(s) 322, 451, 920
BstENI CCTNNNNNAGG 3 cut(s) 1589, 2300, 3038
BstFNI CGCG 4 cut(s) 369, 453, 554, 2692
BstH2I RGCGCY 2 cut(s) 127, 330
BstHHI GCGC 3 cut(s) 126, 329, 371
BstKTI GATC 5 cut(s) 391, 1057, 1224, 2740, 2746
BstMAI GTCTC 4 cut(s) 320, 908, 1553, 2408
BstMBI GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
BstMCI CGRYCG 2 cut(s) 322, 391
BstNI CCWGG 4 cut(s) 435, 790, 1158, 2533
BstNSI RCATGY 2 cut(s) 872, 1278
BstPAI GACNNNNGTC 1 cut(s) 2427
BstSCI CCNGG 7 cut(s) 419, 433, 788, 1156, 1595, 1596, 2531
BstSFI CTRYAG 2 cut(s) 1635, 2934
BstUI CGCG 4 cut(s) 369, 453, 554, 2692
BstV2I GAAGAC 3 cut(s) 483, 1924, 2711
BstXI CCANNNNNNTGG 2 cut(s) 1161, 2716
BstZ17I GTATAC 1 cut(s) 735
BstZI CGGCCG 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 1038
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 9 cut(s) 321, 450, 587, 788, 902, 1595, 2531, 2633, 2768
BtgI CCRYGG 3 cut(s) 322, 451, 920
BtsI GCAGTG 3 cut(s) 2437, 2832, 2985
BtsIMutI CAGTG 4 cut(s) 903, 2437, 2832, 2985
BveI ACCTGC 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 1778
CciI TCATGA 1 cut(s) 2191
CfoI GCGC 3 cut(s) 126, 329, 371
Cfr10I RCCGGY 4 cut(s) 311, 332, 823, 934
Cfr13I GGNCC 5 cut(s) 359, 883, 1033, 1582, 1594
Cfr42I CCGCGG 1 cut(s) 454
Cfr9I CCCGGG 1 cut(s) 1596
CseI GACGC 4 cut(s) 543, 599, 925, 2681
CsiI ACCWGGT 1 cut(s) 1156
Csp6I GTAC 6 cut(s) 565, 676, 909, 972, 2687, 2915
CspCI CAANNNNNGTGG 4 cut(s) 1864, 1899, 2961, 2996
CviQI GTAC 6 cut(s) 565, 676, 909, 972, 2687, 2915
DdeI CTNAG 5 cut(s) 747, 1038, 2199, 2501, 2547
DinI GGCGCC 1 cut(s) 328
DpnI GATC 5 cut(s) 390, 1056, 1223, 2739, 2745
DpnII GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
DraI TTTAAA 1 cut(s) 2353
DrdI GACNNNNNNGTC 1 cut(s) 922
DseDI GACNNNNNNGTC 1 cut(s) 922
EaeI YGGCCR 6 cut(s) 319, 448, 786, 900, 2529, 2766
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 9 cut(s) 134, 236, 716, 794, 1838, 1940, 2145, 2478, 3039
EarI CTCTTC 9 cut(s) 134, 236, 716, 794, 1838, 1940, 2145, 2478, 3039
EciI GGCGGA 4 cut(s) 385, 420, 575, 2060
EclXI CGGCCG 1 cut(s) 319
Eco130I CCWWGG 3 cut(s) 1302, 2409, 3034
Eco147I AGGCCT 1 cut(s) 2633
Eco24I GRGCYC 1 cut(s) 1705
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 4 cut(s) 359, 883, 1033, 1582
Eco52I CGGCCG 1 cut(s) 319
Eco57I CTGAAG 4 cut(s) 1776, 2169, 2343, 2867
Eco81I CCTNAGG 1 cut(s) 1038
Eco88I CYCGRG 4 cut(s) 625, 1596, 2229, 2425
EcoNI CCTNNNNNAGG 3 cut(s) 1589, 2300, 3038
EcoO109I RGGNCCY 1 cut(s) 1582
EcoRI GAATTC 1 cut(s) 2143
EcoRII CCWGG 4 cut(s) 433, 788, 1156, 2531
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 3 cut(s) 1302, 2409, 3034
EcoT22I ATGCAT 1 cut(s) 2930
EcoT38I GRGCYC 1 cut(s) 1705
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 3 cut(s) 1302, 2409, 3034
Esp3I CGTCTC 1 cut(s) 908
FaqI GGGAC 7 cut(s) 242, 1230, 1503, 2105, 2631, 2679, 2905
FauI CCCGC 8 cut(s) 259, 275, 304, 374, 404, 433, 446, 1186
FauNDI CATATG 1 cut(s) 1952
FbaI TGATCA 1 cut(s) 2737
FblI GTMKAC 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 1705
FspBI CTAG 8 cut(s) 852, 1077, 1110, 1547, 1992, 2208, 2378, 2805
GlaI GCGC 3 cut(s) 125, 328, 370
GsaI CCCAGC 2 cut(s) 121, 2091
GsuI CTGGAG 1 cut(s) 1341
HaeII RGCGCY 2 cut(s) 127, 330
HaeIII GGCC 9 cut(s) 321, 450, 587, 788, 902, 1595, 2531, 2633, 2768
HapII CCGG 9 cut(s) 312, 333, 420, 461, 767, 824, 830, 935, 1597
HgaI GACGC 4 cut(s) 543, 599, 925, 2681
HhaI GCGC 3 cut(s) 126, 329, 371
Hin1I GRCGYC 3 cut(s) 327, 540, 917
Hin6I GCGC 3 cut(s) 124, 327, 369
HinP1I GCGC 3 cut(s) 124, 327, 369
HincII GTYRAC 1 cut(s) 2797
HindII GTYRAC 1 cut(s) 2797
HindIII AAGCTT 3 cut(s) 1604, 2124, 2174
HpaII CCGG 9 cut(s) 312, 333, 420, 461, 767, 824, 830, 935, 1597
HphI GGTGA 6 cut(s) 148, 331, 971, 1735, 2963, 2984
Hpy166II GTNNAC 3 cut(s) 735, 1033, 2797
Hpy8I GTNNAC 3 cut(s) 735, 1033, 2797
Hpy99I CGWCG 8 cut(s) 485, 542, 545, 559, 572, 575, 593, 2279
HpyCH4III ACNGT 6 cut(s) 739, 976, 1027, 1930, 2562, 3072
HpyCH4IV ACGT 3 cut(s) 540, 1882, 2094
HpyF3I CTNAG 5 cut(s) 747, 1038, 2199, 2501, 2547
HpySE526I ACGT 3 cut(s) 540, 1882, 2094
Hsp92I GRCGYC 3 cut(s) 327, 540, 917
HspAI GCGC 3 cut(s) 124, 327, 369
KasI GGCGCC 1 cut(s) 326
KpnI GGTACC 1 cut(s) 2690
Ksp22I TGATCA 1 cut(s) 2737
KspI CCGCGG 1 cut(s) 454
Kzo9I GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
LguI GCTCTTC 1 cut(s) 1940
LweI GCATC 9 cut(s) 1072, 1159, 1347, 1471, 1852, 1996, 2355, 2710, 2915
MabI ACCWGGT 1 cut(s) 1156
MaeI CTAG 8 cut(s) 852, 1077, 1110, 1547, 1992, 2208, 2378, 2805
MaeII ACGT 3 cut(s) 540, 1882, 2094
MaeIII GTNAC 5 cut(s) 871, 937, 1129, 2026, 2827
MalI GATC 5 cut(s) 390, 1056, 1223, 2739, 2745
MbiI CCGCTC 1 cut(s) 374
MboI GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
MfeI CAATTG 1 cut(s) 1217
MhlI GDGCHC 1 cut(s) 1705
MlsI TGGCCA 2 cut(s) 2531, 2768
MluNI TGGCCA 2 cut(s) 2531, 2768
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 5 cut(s) 161, 617, 1379, 1990, 2417
MmeI TCCRAC 8 cut(s) 172, 189, 207, 1142, 1161, 1248, 1398, 1626
Mox20I TGGCCA 2 cut(s) 2531, 2768
Mph1103I ATGCAT 1 cut(s) 2930
MroXI GAANNNNTTC 2 cut(s) 1425, 2336
MscI TGGCCA 2 cut(s) 2531, 2768
MseI TTAA 9 cut(s) 1059, 1587, 1937, 1959, 2100, 2172, 2352, 2391, 2433
Msp20I TGGCCA 2 cut(s) 2531, 2768
MspA1I CMGCKG 3 cut(s) 453, 730, 3056
MspCI CTTAAG 3 cut(s) 1058, 1936, 2432
MspI CCGG 9 cut(s) 312, 333, 420, 461, 767, 824, 830, 935, 1597
MspR9I CCNGG 7 cut(s) 421, 435, 790, 1158, 1597, 1598, 2533
MunI CAATTG 1 cut(s) 1217
MvaI CCWGG 4 cut(s) 435, 790, 1158, 2533
MvnI CGCG 4 cut(s) 369, 453, 554, 2692
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 3 cut(s) 421, 1597, 1598
NdeI CATATG 1 cut(s) 1952
NdeII GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
NlaIV GGNNCC 9 cut(s) 241, 328, 828, 885, 1035, 1300, 1888, 2294, 2688
NmeAIII GCCGAG 2 cut(s) 297, 1789
NmuCI GTSAC 2 cut(s) 1129, 2827
NsiI ATGCAT 1 cut(s) 2930
NspI RCATGY 2 cut(s) 872, 1278
NspV TTCGAA 1 cut(s) 528
PaeR7I CTCGAG 1 cut(s) 625
PagI TCATGA 1 cut(s) 2191
PceI AGGCCT 1 cut(s) 2633
PciSI GCTCTTC 1 cut(s) 1940
PcsI WCGNNNNNNNCGW 1 cut(s) 534
PdmI GAANNNNTTC 2 cut(s) 1425, 2336
PfeI GAWTC 7 cut(s) 43, 508, 1007, 1433, 1997, 2188, 2542
PflMI CCANNNNNTGG 2 cut(s) 2846, 2948
Ple19I CGATCG 1 cut(s) 391
PleI GAGTC 5 cut(s) 161, 617, 1379, 1989, 2417
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 5 cut(s) 161, 617, 1379, 1989, 2417
PpuMI RGGWCCY 1 cut(s) 1582
PshAI GACNNNNGTC 1 cut(s) 2427
Psp5II RGGWCCY 1 cut(s) 1582
Psp6I CCWGG 4 cut(s) 433, 788, 1156, 2531
PspFI CCCAGC 2 cut(s) 117, 2087
PspGI CCWGG 4 cut(s) 433, 788, 1156, 2531
PspN4I GGNNCC 9 cut(s) 241, 328, 828, 885, 1035, 1300, 1888, 2294, 2688
PspPI GGNCC 5 cut(s) 359, 883, 1033, 1582, 1594
PspPPI RGGWCCY 1 cut(s) 1582
PspXI VCTCGAGB 1 cut(s) 625
PstI CTGCAG 2 cut(s) 1639, 2938
PstNI CAGNNNCTG 1 cut(s) 1778
PvuI CGATCG 1 cut(s) 391
PvuII CAGCTG 2 cut(s) 730, 3056
RsaI GTAC 6 cut(s) 566, 677, 910, 973, 2688, 2916
RsaNI GTAC 6 cut(s) 565, 676, 909, 972, 2687, 2915
SacII CCGCGG 1 cut(s) 454
SapI GCTCTTC 1 cut(s) 1940
SaqAI TTAA 9 cut(s) 1059, 1587, 1937, 1959, 2100, 2172, 2352, 2391, 2433
Sau3AI GATC 5 cut(s) 388, 1054, 1221, 2737, 2743
Sau96I GGNCC 5 cut(s) 359, 883, 1033, 1582, 1594
ScaI AGTACT 1 cut(s) 973
SchI GAGTC 5 cut(s) 161, 617, 1379, 1990, 2417
ScrFI CCNGG 7 cut(s) 421, 435, 790, 1158, 1597, 1598, 2533
SduI GDGCHC 1 cut(s) 1705
SexAI ACCWGGT 1 cut(s) 1156
SfaNI GCATC 9 cut(s) 1072, 1159, 1347, 1471, 1852, 1996, 2355, 2710, 2915
SfcI CTRYAG 2 cut(s) 1635, 2934
SfoI GGCGCC 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 625
Sfr303I CCGCGG 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 528
SgrBI CCGCGG 1 cut(s) 454
SinI GGWCC 4 cut(s) 359, 883, 1033, 1582
SlaI CTCGAG 1 cut(s) 625
SmaI CCCGGG 1 cut(s) 1598
SmlI CTYRAG 6 cut(s) 625, 1058, 1121, 1936, 2432, 2726
SmoI CTYRAG 6 cut(s) 625, 1058, 1121, 1936, 2432, 2726
SpeI ACTAGT 1 cut(s) 1076
SseBI AGGCCT 1 cut(s) 2633
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 8 cut(s) 852, 1077, 1110, 1547, 1992, 2208, 2378, 2805
StuI AGGCCT 1 cut(s) 2633
StyD4I CCNGG 7 cut(s) 419, 433, 788, 1156, 1595, 1596, 2531
StyI CCWWGG 3 cut(s) 1302, 2409, 3034
TaaI ACNGT 6 cut(s) 739, 976, 1027, 1930, 2562, 3072
TaiI ACGT 3 cut(s) 543, 1885, 2097
TatI WGTACW 3 cut(s) 675, 971, 2914
TauI GCSGC 6 cut(s) 240, 374, 453, 902, 1172, 1367
TfiI GAWTC 7 cut(s) 43, 508, 1007, 1433, 1997, 2188, 2542
Tru1I TTAA 9 cut(s) 1059, 1587, 1937, 1959, 2100, 2172, 2352, 2391, 2433
Tru9I TTAA 9 cut(s) 1059, 1587, 1937, 1959, 2100, 2172, 2352, 2391, 2433
TscAI CASTG 4 cut(s) 910, 2444, 2832, 2985
TseFI GTSAC 2 cut(s) 1129, 2827
Tsp45I GTSAC 2 cut(s) 1129, 2827
TspDTI ATGAA 7 cut(s) 121, 1082, 1487, 1760, 2208, 2276, 2507
TspGWI ACGGA 2 cut(s) 716, 1311
TspMI CCCGGG 1 cut(s) 1596
TspRI CASTG 4 cut(s) 910, 2444, 2832, 2985
Van91I CCANNNNNTGG 2 cut(s) 2846, 2948
Vha464I CTTAAG 3 cut(s) 1058, 1936, 2432
VpaK11BI GGWCC 4 cut(s) 359, 883, 1033, 1582
XagI CCTNNNNNAGG 3 cut(s) 1589, 2300, 3038
XapI RAATTY 4 cut(s) 715, 2143, 2180, 2873
XceI RCATGY 2 cut(s) 872, 1278
XhoI CTCGAG 1 cut(s) 625
XmaI CCCGGG 1 cut(s) 1596
XmiI GTMKAC 1 cut(s) 734
XmnI GAANNNNTTC 2 cut(s) 1425, 2336
XspI CTAG 8 cut(s) 852, 1077, 1110, 1547, 1992, 2208, 2378, 2805
ZraI GACGTC 1 cut(s) 541
ZrmI AGTACT 1 cut(s) 973
Zsp2I ATGCAT 1 cut(s) 2930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.