Rh6BG255100

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000856
Physical Location & Seq
Forward (+)
46761141 .. 46761431
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG255100.1

Sequence Viewer

Length: 291 bp
ATGCCTATCTCTCACCAGCGCCTATTCCTCTACCAAAGCCTCCAATTATCCACCCAAAGCGATGCCGCACTCCTCTTCGACCTCGGTATCGGACCCCTCTCCACCCTAACCCTCCACACCCCTTCCTCTGATGCTCCGGATTTTGATATGTCCAAGGCTCTGATGCTCCGGCTTCCAATTACATGGCATGGTACCAGATCGAAGGCTCTCGGAAGCTCTAGGGCTCACTTCCGAGGAGACAGTTTGCCGGAGTGGTTGTTAGGTCTACCATTAGATCTTCTCCCCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

96

Amino Acids

10.6

Weight (kDa)

6.0

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 265
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 1 cut(s) 66
AfaI GTAC 1 cut(s) 193
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 136
Asp718I GGTACC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 5
AvaII GGWCC 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 70, 103
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 22
BglII AGATCT 1 cut(s) 274
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 94, 193
BmsI GCATC 3 cut(s) 52, 121, 153
BsaJI CCNNGG 3 cut(s) 82, 153, 232
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
BseAI TCCGGA 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 82, 153, 232
BseRI GAGGAG 2 cut(s) 62, 249
BshNI GGYRCC 1 cut(s) 191
BsiSI CCGG 3 cut(s) 137, 169, 248
BsmAI GTCTC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 226
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 197, 274
BspACI CCGC 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 94, 193
BspT107I GGYRCC 1 cut(s) 191
BssECI CCNNGG 3 cut(s) 82, 153, 232
BssMI GATC 2 cut(s) 197, 274
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 200, 277
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 197, 274
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 183
BstYI RGATCY 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 75
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 192
CviAII CATG 2 cut(s) 183, 188
CviJI RGCY 6 cut(s) 39, 158, 172, 206, 216, 224
CviKI_1 RGCY 6 cut(s) 39, 158, 172, 206, 216, 224
CviQI GTAC 1 cut(s) 192
DpnI GATC 2 cut(s) 199, 276
DpnII GATC 2 cut(s) 197, 274
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 186, 191
FaiI YATR 3 cut(s) 149, 184, 189
FatI CATG 2 cut(s) 182, 187
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 22
HapII CCGG 3 cut(s) 137, 169, 248
HhaI GCGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 186, 191
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HpaII CCGG 3 cut(s) 137, 169, 248
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 5 cut(s) 92, 130, 162, 212, 233
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 132, 196
HpyCH4III ACNGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 186, 191
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 136
KpnI GGTACC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 197, 274
LmnI GCTCC 2 cut(s) 139, 171
LpnPI CCDG 5 cut(s) 29, 150, 182, 208, 261
LweI GCATC 3 cut(s) 52, 121, 153
MaeI CTAG 1 cut(s) 219
MalI GATC 2 cut(s) 199, 276
MboI GATC 2 cut(s) 197, 274
MboII GAAGA 2 cut(s) 67, 269
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 2 cut(s) 44, 177
MnlI CCTC 8 cut(s) 38, 50, 83, 92, 107, 122, 136, 227
MroI TCCGGA 1 cut(s) 136
MspI CCGG 3 cut(s) 137, 169, 248
NdeII GATC 2 cut(s) 197, 274
NlaIII CATG 2 cut(s) 186, 191
NlaIV GGNNCC 2 cut(s) 94, 193
PkrI GCNGC 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 94, 193
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 2 cut(s) 197, 274
Sau96I GGNCC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 226
SetI ASST 3 cut(s) 84, 218, 265
SfaNI GCATC 3 cut(s) 52, 121, 153
SinI GGWCC 1 cut(s) 92
Sse9I AATT 2 cut(s) 44, 177
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 78, 200
TasI AATT 2 cut(s) 44, 177
TauI GCSGC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 265
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.