Rh6CG206900

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000856
Physical Location & Seq
Reverse (-)
34423983 .. 34424342
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG206900.1

Sequence Viewer

Length: 360 bp
ATGGATGCTCTCAAGAAATGTGATCACGATCCCCATGTCATTGCTGCTGTGGCCAAGTTATTCTGGCTCGACAGGATGGTTGACAAGGCTAGGACTTGGCTCAACAGGGCAATGACACTTGCCCCAGATATTGGAGATTTCTGGGCTTTATACTACAAATTTGAACTTCAGAATGGGACTGACGAGAACCAGAAGGATGTACTGAAAAGATGCATTGCTGCAGAACCAAAGCATGGTGAAAAAGGGCAACCTATTTCAAAGGCAGTGGAGAACTCTCACCAACCAACTGAAGCTATCTTGAAGAAGGCGGTTGTTGCCCTTGGCAAGGAAGAGAGTGCAGCTGAAAATAATAGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

119

Amino Acids

13.43

Weight (kDa)

6.9

Isoelectric Point (pI)

20.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 131, 233
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 152, 309
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 131, 233, 325
AgsI TTSAA 3 cut(s) 164, 258, 301
AluBI AGCT 2 cut(s) 293, 341
AluI AGCT 2 cut(s) 293, 341
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 44, 218, 338
ApoI RAATTY 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 248, 269
BalI TGGCCA 1 cut(s) 53
BbvI GCAGC 3 cut(s) 31, 205, 350
BccI CCATC 1 cut(s) 70
BclI TGATCA 1 cut(s) 22
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 3 cut(s) 45, 219, 339
BlsI GCNGC 3 cut(s) 46, 220, 340
BmsI GCATC 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 233, 325
Bse3DI GCAATG 3 cut(s) 39, 117, 213
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 3 cut(s) 10, 81, 202
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 131, 233, 325
BseMI GCAATG 3 cut(s) 39, 117, 213
BseXI GCAGC 3 cut(s) 31, 205, 350
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 3 cut(s) 131, 233, 325
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 22, 28
BspACI CCGC 1 cut(s) 308
BspANI GGCC 1 cut(s) 53
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 23
BsrDI GCAATG 3 cut(s) 39, 117, 213
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 22, 28
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 324
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 3 cut(s) 10, 81, 202
BstKTI GATC 2 cut(s) 25, 31
BstMBI GATC 2 cut(s) 22, 28
BstMWI GCNNNNNNNGC 2 cut(s) 50, 314
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 31, 205, 350
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 3 cut(s) 10, 81, 202
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
Csp6I GTAC 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 246, 281
CviAII CATG 2 cut(s) 35, 233
CviJI RGCY 7 cut(s) 53, 67, 89, 100, 146, 293, 341
CviKI_1 RGCY 7 cut(s) 53, 67, 89, 100, 146, 293, 341
CviQI GTAC 1 cut(s) 200
DpnI GATC 2 cut(s) 24, 30
DpnII GATC 2 cut(s) 22, 28
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 152, 309
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 38, 236
FaiI YATR 3 cut(s) 36, 151, 234
FaqI GGGAC 1 cut(s) 190
FatI CATG 2 cut(s) 34, 232
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 45, 219, 339
FokI GGATG 3 cut(s) 17, 88, 209
Fsp4HI GCNGC 3 cut(s) 45, 219, 339
FspBI CTAG 1 cut(s) 90
GluI GCNGC 3 cut(s) 45, 219, 339
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 2 cut(s) 38, 236
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HphI GGTGA 2 cut(s) 248, 269
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 3 cut(s) 13, 26, 298
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 187, 298
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 213, 221, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 314
Hsp92II CATG 2 cut(s) 38, 236
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 22, 28
LpnPI CCDG 6 cut(s) 49, 58, 91, 127, 138, 203
Lsp1109I GCAGC 3 cut(s) 31, 205, 350
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 90
MalI GATC 2 cut(s) 24, 30
MboI GATC 2 cut(s) 22, 28
MboII GAAGA 2 cut(s) 313, 341
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 53
Mox20I TGGCCA 1 cut(s) 53
Mph1103I ATGCAT 1 cut(s) 215
MscI TGGCCA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 50, 314
NdeII GATC 2 cut(s) 22, 28
NlaIII CATG 2 cut(s) 38, 236
NsiI ATGCAT 1 cut(s) 215
PflMI CCANNNNNTGG 2 cut(s) 131, 233
PkrI GCNGC 3 cut(s) 46, 220, 340
PstI CTGCAG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SatI GCNGC 3 cut(s) 45, 219, 339
Sau3AI GATC 2 cut(s) 22, 28
SetI ASST 3 cut(s) 253, 295, 343
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 158
SsiI CCGC 1 cut(s) 308
SspMI CTAG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 158
TatI WGTACW 1 cut(s) 199
TscAI CASTG 1 cut(s) 270
TseI GCWGC 3 cut(s) 44, 218, 338
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 2 cut(s) 131, 233
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 1 cut(s) 158
XspI CTAG 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.