Rmu_sc0002032.1_g000006

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002032.1
OG0000856
Physical Location & Seq
Forward (+)
15837 .. 16247
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002032.1_g000006.1.cds

Sequence Viewer

Length: 411 bp
atggcaaaggctttgcaggagcaggagtgtcccaatagtggtatcttgtgggcagcatctattgggatggtacctggtcctcaaaggaagaccaaaagtctagatgcctacaaatattgtggtaaggaagatccccatgttaatgctgttgtgggcaagttattttggcatgaaagaaagatagacagagttaggaatctaggactaagctcaacctggcagttacacatgccccaaatattggagatttctggactttatactacaagtttgaactttagaatggaactgaggagacccggaaggacgtactggaatggtgtgttgctgcacaaccaaagcatggtgaaaaatggcaaactatttcaaaggccgtggagaattggcaccaaccaactgaaactatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

136

Amino Acids

15.66

Weight (kDa)

10.13

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 2 cut(s) 70, 386
AccB7I CCANNNNNTGG 2 cut(s) 241, 343
AclWI GGATC 1 cut(s) 125
AfaI GTAC 2 cut(s) 72, 311
AfiI CCNNNNNNNGG 3 cut(s) 38, 241, 343
AgsI TTSAA 2 cut(s) 274, 368
AhdI GACNNNNNGTC 1 cut(s) 96
AjnI CCWGG 2 cut(s) 73, 215
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 2 cut(s) 53, 328
Asp718I GGTACC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 358
AvaII GGWCC 1 cut(s) 77
BanI GGYRCC 2 cut(s) 70, 386
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 2 cut(s) 65, 315
BccI CCATC 1 cut(s) 61
BceAI ACGGC 1 cut(s) 358
BciT130I CCWGG 2 cut(s) 75, 217
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 2 cut(s) 101, 200
BisI GCNGC 2 cut(s) 54, 329
BlsI GCNGC 2 cut(s) 55, 330
Bme1390I CCNGG 3 cut(s) 75, 217, 300
Bme18I GGWCC 1 cut(s) 77
BmeRI GACNNNNNGTC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 72, 388
BmrFI CCNGG 3 cut(s) 75, 217, 300
BmsI GCATC 2 cut(s) 65, 94
BpiI GAAGAC 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 241, 343
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 2 cut(s) 75, 217
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 3 cut(s) 38, 241, 343
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 65, 315
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 373
BshNI GGYRCC 2 cut(s) 70, 386
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 3 cut(s) 38, 241, 343
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 72, 388
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 2 cut(s) 70, 386
BspTNI GGTCTC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 75, 217
BstDEI CTNAG 2 cut(s) 206, 290
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 130
BstNI CCWGG 2 cut(s) 75, 217
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 73, 215, 298
BstV1I GCAGC 2 cut(s) 65, 315
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 373
BtgI CCRYGG 1 cut(s) 374
BtsCI GGATG 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 73
Csp6I GTAC 2 cut(s) 71, 310
CspCI CAANNNNNGTGG 4 cut(s) 100, 135, 356, 391
CviAII CATG 4 cut(s) 137, 170, 229, 343
CviJI RGCY 3 cut(s) 11, 210, 373
CviKI_1 RGCY 3 cut(s) 11, 210, 373
CviQI GTAC 2 cut(s) 71, 310
DdeI CTNAG 2 cut(s) 206, 290
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DriI GACNNNNNGTC 1 cut(s) 96
Eam1105I GACNNNNNGTC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 73, 215
FaeI CATG 4 cut(s) 140, 173, 232, 346
FaiI YATR 5 cut(s) 138, 171, 230, 261, 344
FaqI GGGAC 1 cut(s) 15
FatI CATG 4 cut(s) 136, 169, 228, 342
Fnu4HI GCNGC 2 cut(s) 54, 329
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 54, 329
FspBI CTAG 2 cut(s) 101, 200
GluI GCNGC 2 cut(s) 54, 329
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 300
Hin1II CATG 4 cut(s) 140, 173, 232, 346
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 300
HphI GGTGA 1 cut(s) 358
Hpy188III TCNNGA 3 cut(s) 101, 252, 408
HpyAV CCTTC 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 16, 331
HpyF3I CTNAG 2 cut(s) 206, 290
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 4 cut(s) 140, 173, 232, 346
KpnI GGTACC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 9 cut(s) 2, 8, 60, 87, 202, 229, 237, 298, 313
Lsp1109I GCAGC 2 cut(s) 65, 315
LweI GCATC 2 cut(s) 65, 94
MabI ACCWGGT 1 cut(s) 73
MaeI CTAG 2 cut(s) 101, 200
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 222
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 2 cut(s) 100, 140
MflI RGATCY 1 cut(s) 130
MluCI AATT 1 cut(s) 381
MnlI CCTC 2 cut(s) 90, 285
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 3 cut(s) 75, 217, 300
MvaI CCWGG 2 cut(s) 75, 217
NciI CCSGG 1 cut(s) 300
NdeII GATC 1 cut(s) 130
NlaIII CATG 4 cut(s) 140, 173, 232, 346
NlaIV GGNNCC 2 cut(s) 72, 388
NspI RCATGY 1 cut(s) 232
PfeI GAWTC 1 cut(s) 196
PflMI CCANNNNNTGG 2 cut(s) 241, 343
PkrI GCNGC 2 cut(s) 55, 330
Psp6I CCWGG 2 cut(s) 73, 215
PspGI CCWGG 2 cut(s) 73, 215
PspN4I GGNNCC 2 cut(s) 72, 388
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 72, 311
RsaNI GTAC 2 cut(s) 71, 310
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 54, 329
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 3 cut(s) 75, 217, 300
SetI ASST 4 cut(s) 76, 212, 218, 311
SexAI ACCWGGT 1 cut(s) 73
SfaNI GCATC 2 cut(s) 65, 94
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 381
SspI AATATT 2 cut(s) 116, 240
SspMI CTAG 2 cut(s) 101, 200
StyD4I CCNGG 3 cut(s) 73, 215, 298
TaiI ACGT 1 cut(s) 311
TasI AATT 1 cut(s) 381
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 2 cut(s) 53, 328
TspDTI ATGAA 1 cut(s) 186
Van91I CCANNNNNTGG 2 cut(s) 241, 343
VpaK11BI GGWCC 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 232
XspI CTAG 2 cut(s) 101, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.