Rh6BG205300

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000856
Physical Location & Seq
Reverse (-)
38652635 .. 38653159
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG205300.1

Sequence Viewer

Length: 525 bp
ATGGGTGCTAAGGAGAAGTGGCTTGCTGGGGACGTCCCTGCTGCCCGTGCAATCCTTCAAGAAGCTTATGCTGCCATTCCGAATTCTAAAGAAATTTGGCTTGCTGCGTTTAAGCTTGAATTTGAGAATCATGAACCTGAGAGAGCTAGGATGCTTCTTGCCAAAGCCCGAGAAAGGGGAGGAACAGAGAGAGTATGGATGAAATCAGCAATCATTGAAAGAGAATTAGGGAACCTCGATGAGGAGAGGAAGTTGCTTGCTGAAGGATTGAAGCGCTTCCCTTCGTTCTTTAAATTGTGGTTGATGCTTGGACAACTAGAGGAATGGCTTAACCATTTGGAAAAGGCCAAGGAGGCTTATGACTCGGGTCTTAAGCACTGTTCCAATTCTATACCACTCTGGCTTTCTCTTGTAAATCTTGAAGAGAAGATGAATGGGCTGAGTAAAGCTCGTGCAGTTCTTACGATGGCCAAGAAGAAAAATCCTCAGTTCTTACGTGCAATTCTATACCATTCTATACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

174

Amino Acids

19.98

Weight (kDa)

9.3

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_19 PF14559 9 - 67 1.5e-06 Tetratricopeptide repeat
HAT_PRP39_N PF23240 76 - 143 4.6e-06 PRP39 N-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 3 cut(s) 82, 93, 119
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 33
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 3 cut(s) 174, 175, 241
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 5 cut(s) 59, 119, 218, 271, 422
AluBI AGCT 4 cut(s) 65, 115, 146, 449
AluI AGCT 4 cut(s) 65, 115, 146, 449
Ama87I CYCGRG 2 cut(s) 168, 364
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 2 cut(s) 345, 468
ApeKI GCWGC 3 cut(s) 41, 71, 104
ApoI RAATTY 3 cut(s) 82, 93, 119
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 276
AvaI CYCGRG 2 cut(s) 168, 364
BalI TGGCCA 1 cut(s) 470
BauI CACGAG 1 cut(s) 450
BbvI GCAGC 3 cut(s) 28, 58, 91
BccI CCATC 1 cut(s) 460
BfaI CTAG 2 cut(s) 147, 317
BfoI RGCGCY 1 cut(s) 277
BfrI CTTAAG 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 3 cut(s) 42, 72, 105
BlsI GCNGC 3 cut(s) 43, 73, 106
BmeT110I CYCGRG 2 cut(s) 168, 364
BmiI GGNNCC 1 cut(s) 233
BmsI GCATC 2 cut(s) 141, 294
BoxI GACNNNNGTC 1 cut(s) 366
BplI GAGNNNNNCTC 2 cut(s) 433, 465
Bpu10I CCTNAGC 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 175, 241
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 156, 204
BseLI CCNNNNNNNGG 3 cut(s) 174, 175, 241
BseMII CTCAG 3 cut(s) 129, 431, 500
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 28, 58, 91
BseYI CCCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 2 cut(s) 347, 470
BsiHKCI CYCGRG 2 cut(s) 168, 364
BslFI GGGAC 2 cut(s) 20, 44
BslI CCNNNNNNNGG 3 cut(s) 174, 175, 241
BsmFI GGGAC 2 cut(s) 20, 44
BsnI GGCC 2 cut(s) 347, 470
BsoBI CYCGRG 2 cut(s) 168, 364
BspANI GGCC 2 cut(s) 347, 470
BspCNI CTCAG 3 cut(s) 130, 432, 499
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 450
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 24, 102, 258
BstDEI CTNAG 4 cut(s) 9, 138, 440, 486
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 156, 204
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 47, 71, 353
BstPAI GACNNNNGTC 1 cut(s) 366
BstV1I GCAGC 3 cut(s) 28, 58, 91
BsuRI GGCC 2 cut(s) 347, 470
BtsCI GGATG 2 cut(s) 156, 204
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 24, 102, 258
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 276
CviAII CATG 1 cut(s) 131
DdeI CTNAG 4 cut(s) 9, 138, 440, 486
DraI TTTAAA 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 348
Eco47III AGCGCT 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 168, 364
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 134
FaiI YATR 7 cut(s) 69, 132, 196, 360, 392, 508, 518
FaqI GGGAC 2 cut(s) 20, 44
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 42, 72, 105
FokI GGATG 2 cut(s) 163, 211
Fsp4HI GCNGC 3 cut(s) 42, 72, 105
FspBI CTAG 2 cut(s) 147, 317
GlaI GCGC 1 cut(s) 275
GluI GCNGC 3 cut(s) 42, 72, 105
GsaI CCCAGC 1 cut(s) 30
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 347, 470
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 134
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 2 cut(s) 63, 113
HinfI GANTC 2 cut(s) 127, 362
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 3 cut(s) 59, 131, 419
HpyAV CCTTC 3 cut(s) 65, 257, 291
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 2 cut(s) 33, 496
HpyCH4V TGCA 3 cut(s) 50, 455, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 71, 353
HpyF3I CTNAG 4 cut(s) 9, 138, 440, 486
HpySE526I ACGT 2 cut(s) 33, 496
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 134
HspAI GCGC 1 cut(s) 274
LpnPI CCDG 4 cut(s) 12, 51, 150, 385
Lsp1109I GCAGC 3 cut(s) 28, 58, 91
LweI GCATC 2 cut(s) 141, 294
MaeI CTAG 2 cut(s) 147, 317
MaeII ACGT 2 cut(s) 33, 496
MboII GAAGA 3 cut(s) 434, 439, 487
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 7 cut(s) 82, 93, 119, 224, 293, 385, 501
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 7 cut(s) 173, 235, 240, 245, 313, 346, 495
Mox20I TGGCCA 1 cut(s) 470
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 1 cut(s) 470
MseI TTAA 4 cut(s) 111, 291, 330, 372
Msp20I TGGCCA 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 47, 71, 353
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 233
PagI TCATGA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 43, 73, 106
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
Ppu21I YACGTR 1 cut(s) 497
PshAI GACNNNNGTC 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 233
SaqAI TTAA 4 cut(s) 111, 291, 330, 372
SatI GCNGC 3 cut(s) 42, 72, 105
SchI GAGTC 1 cut(s) 356
SetI ASST 9 cut(s) 36, 67, 117, 139, 148, 237, 451, 499, 523
SfaNI GCATC 2 cut(s) 141, 294
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 7 cut(s) 82, 93, 119, 224, 293, 385, 501
SspMI CTAG 2 cut(s) 147, 317
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 2 cut(s) 36, 499
TaqI TCGA 1 cut(s) 237
TasI AATT 7 cut(s) 82, 93, 119, 224, 293, 385, 501
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 4 cut(s) 111, 291, 330, 372
Tru9I TTAA 4 cut(s) 111, 291, 330, 372
TscAI CASTG 1 cut(s) 383
TseI GCWGC 3 cut(s) 41, 71, 104
TspDTI ATGAA 3 cut(s) 147, 215, 446
TspRI CASTG 1 cut(s) 383
Vha464I CTTAAG 1 cut(s) 371
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 3 cut(s) 82, 93, 119
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 2 cut(s) 147, 317
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.