pycom09g16820

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000856
Physical Location & Seq
Forward (+)
17190664 .. 17195595
4932 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16820.1

Sequence Viewer

Length: 3693 bp
ATGGTGTTCATCACATCCCCCAATCACAAAACCCTAACCCTAAATCTAAACCCTAAGACCACCACTCTCCAAGCCCTAAAGCTCCAAATCGAGCAAAATTCCCACATACCCATTCCTCTGCAGCGCCTATTCATCTCCCAGAGCCTCCAATTGCTCACCCAATCCGACTCCGCCCTCCTCTCCGACCTCGGAATCCGACCCCTCTCAACCCTAACTCTTCACATCCCCGTATTCGGCGGCACCCAACCTCCCGCCGTCCCTAAACCCCGCCTCGAGTTCCTGAACTCCAAGCCTCCCCCGAATTATGTCGCCGGGCTCGGCCGTGGGGCCACTGGCTTTACCACCAGGTCTGATATCGGGCCCGCACGTGCCGCGCCCGACCTGCCTGATAGGTCGGCCACCACAATCGATAAAGGGTACGATGAGAATCAGAAGTTTGATGAATTCGAAGGGAATGATGTTGGGTTGTTTGCATCGGCGGAATATGATGATGAGGACAAGGAGGCTGATGCGGTGTGGGAAGCCATTGAGCAAAGAATGGACTCGCGGAGGAAGGACAGGAGAGAAGCACGGTTGAAAGAAGAGATTGAAAAGTACAGAGCTTCGAACCCAAAGATCACAGAGCAGTTCGCTACTCTGAAGAGGAAGTTGTACACTGTGTCTGCTCAGGAATGGGAGAGCATACCAGAAATTGGAGACTATTCGTCGAGGAACAAGAAGAAGAGATTTGAGAGCTTTGTGCCGGTGCCCGATACACTTTTAGAGAAAGCAAGACAGGAAAAGGAGCATGTTACGGCATTGGACCCCAAGAGTAGGGGAGCTGGTGGTACGGAGACTCCGTGGTCTCAAACTCCGGTTACGGATTTGACTGCTGTAGGTGAGGGTAGAGGTACTGTTTTGTCATTGAAATTAGATAGGCTTTCTGATTCTGTTTCTGGATTGACGGTTGTGGACCCGAAAGGGTACCTTACTGATCTTAAGAGTATGAAGATTACTAGTGATGCCGAGATTTCGGATATTAAAAAGGCTAGGTTGTTGCTTAAGAGTGTTATACAGACGAATCCAAAGCACCCACCTGGTTGGATTGCAGCTGCAAGGCTGGAGGAGGTGGCTGGGAAGATTCAGGCAGCTAGACAATTGATTCAGAAAGGGTGTGAAGAATGTCCTAAGAGTGAGGATGTGTGGTTAGAGGCGTGTAGGCTTTCAAGCCCTGATGAAGCTAAGTCCGTGATTTCTAAGGGAGTGAAGTCGATTCCCAATTCGGTGAAGTTGTGGATGCAGGCTGCGAAATTGGAGCGTGATGATTTGAATAGGAGCAGGGTATTGAGGAAAGGTTTGGAACACATTCCCGATTCTGTTAGGCTATGGAAGTCAGTGGTGGAGCTTGCCAATGAGGAGGATGCGAGACTTCTGCTTCATAGGGCTGTGGAGTGTTGTCCCTTGCACATTGAGTTATGGCTTGCACTTGCAAGATTGGAAACTTATGATAATGCGAGGAAGGTCCTTAATAGGGCAAGAGAGAAGTTATCAAAAGAGCCTGCCATTTGGATCACAGCAGCGAAGTTGGAGGAAGCTAATGGGAACACGGCCATGGTTGGGAAGATTATTGAAAGGGGTATAAGGGCTTTGCAAAGAGAAGGGTTGGCGATTGATAGAGAGGCATGGATGAAGGAGGCTGAAGCTGCTGAGCGTGCAGGGTCTGTTGCAACTTGCCAAGCAATCATTCGGAACACAATTGGGATTGGTGTGGAGGAAGAGGATAGAAAGAGGACATGGGTTGCTGATGCTGAGGAATGCAAGAAAAGGGGTTCCATTGAAACAGCCAGAGCTATTTATGCACACGCACTTACTGTCTTTCTAACCAAGAAGAGCATATGGCTCAAAGCCGCACAGCTTGAAAAGAGCCATGGGACTAGGGAATCTCTTGATGCCTTACTTCGTAAAGCGGTGACATACCGACCACAGGCTGAAGTCTTGTGGCTTATGGGAGCTAAGGAGAAGTGGCTTGCTGGGGATGTGCCTGCTGCTCGTGCCATCCTTCAAGAAGCTTATGCTGCCATTCCCAATTCTGAAGAAATTTGGCTTGCTGCATTTAAACTTGAATTTGAGAACCATGAACCAGAGAGAGCTAGAATGCTTCTTGCCAAAGCCCGAGAAAAGGGAGGCACTGAAAGAGTGTGGATGAAATCAGCAATTGTTGAGAGAGAATTAGGGAACATTAATGCGGAGAGGAAGTTGCTTGATGATGGGTTGAAGCGCTTCCCTTCCTTTTATAAATTATGGTTGATGCTTGGACAGCTAGAGGAACGCCTTGGTCATTTGGAGAAAGCCAAGGAGGCCTATGATTCGGGTCTGAAGTACTGCTCCAGTTCTATTCCACTGTGGCTTTCTCTTGCTAATCTTGAAGAGAAGATGACTGGTCTGAGTAAAGCTCGTGCAATTCTGACGATGGCCCGAAAGAAGAATCCTCAGAACCCTGAATTGTGGCTTGCTGCTGTTCGAGCTGAATTAAGGCATGGAAATAAGAAGGAAGCTGATATCTTGATGGCAAAGGCTTTGCAGGAGTGTCCCAATAGTGGTATATTGTGGGCTGCGTCCATTGAGATGGTACCCCGTCCACAACGGAAGACGAAGAGTATGGATGCCCTGAAGAAATGTGATCATGATCCCCATGTCATTGCTGCTGTGTCTAAGTTATTTTGGCATGACAGGAAGGTTGACAAAGCTAGGACTTGGCTTAACAGGGCAGTGACACTAGCGCCAGATATTGGGGATTTCTGGGCTTTATACTACAAATTTGAACTTCAACATGGAACCGATGAGAACCAGAAAGATGTACTTAAAAGGTGCATAGCTGCGGAACCAAAGCATGGTGAGAAATGGCAACCTATTTCAAAGGCCGTGGAGAACTCCCACCAACCAACTGAAGCCATCTTGAAGAAAGTGGTGGTTGCTCTTGGGAAGGAAGAGAGTGCAGCTGAACATAATAAACAGTACTCACCCCTCCTCCCTTTCCCTTTCTCACCGTTTGAATATATGCCGAGTGAAGTGTGTCGTACCAAATTTCTCATTCTGACACAGTTGCAATATATACACATACGTAATATGTATCCTCGTAATGTTCATATCCAGTCGTTCAATAACAAATACCATTCAAAGTTTACAGATTCTGTTTCTGGGTTGACGGTTGAGGAACAAGAAGAAGACATTCAAGAGCTTTCTGGTGGTGGCCGCTGCGCTTTCAAACAAGGCAGGACAGGAACCGGAGTCGAAAGGATTGTTTTGTTACCAATATCTTTATCTGGTAAAAAATCCAGGAAAGAACAAGCTCTTTTCTCTCCTCCCGTGAGAGATCTTTTCTCCTCTTGTGAGAATCTTTCTTACCTTTGTGTGGGTGTTCTTCATTTCGTTAAATTCGCATCACCGCTGGCCCTAGCTGTGGCTAGGGTCGGTTGTAATCTCATGGTTTTCCTTTCTTTTCCCTTTCTCTTTGCTCTCTCTGTTGTCTGCACTTTTCCCCATCCCTGCAATTCTCAATTTCCTCATCTGGAGTCTTCCCTTGCTTTTGATCACACCATCTCTAAATCTAATTCCCAATCATCCGATTCTTCCATCTCCTTGATCCATCCCCTTCCACTCCCCTCCCTCCATCTCCCTTCCATCCATCTCCTTTCATCTTTTTCATCAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

1231

Amino Acids

137.93

Weight (kDa)

8.84

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 98 - 237 9.5e-52 PRP1 splicing factor, N-terminal
Suf PF05843 393 - 546 1.4e-06 Suppressor of forked protein (Suf)
HAT_PRP39_N PF23240 733 - 804 2.7e-06 PRP39 N-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2274
AasI GACNNNNNNGTC 1 cut(s) 841
Acc36I ACCTGC 1 cut(s) 390
Acc65I GGTACC 2 cut(s) 963, 2608
AccB1I GGYRCC 4 cut(s) 239, 745, 963, 2608
AccB7I CCANNNNNTGG 3 cut(s) 692, 2768, 2870
AccII CGCG 2 cut(s) 374, 547
AclWI GGATC 3 cut(s) 1556, 2660, 3616
AcoI YGGCCR 4 cut(s) 319, 396, 1587, 3229
AcsI RAATTY 7 cut(s) 97, 443, 2076, 2102, 2795, 3062, 3413
AcuI CTGAAG 7 cut(s) 659, 1698, 1989, 2091, 2375, 2669, 2946
AcvI CACGTG 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 2258
AflII CTTAAG 2 cut(s) 977, 1040
AhdI GACNNNNNGTC 1 cut(s) 703
AhlI ACTAGT 1 cut(s) 995
AjnI CCWGG 3 cut(s) 344, 1075, 3314
AjuI GAANNNNNNNTTGG 2 cut(s) 1707, 1739
Alw26I GTCTC 4 cut(s) 690, 827, 849, 1399
AlwI GGATC 3 cut(s) 1556, 2660, 3616
AlwNI CAGNNNCTG 2 cut(s) 1700, 3170
Ama87I CYCGRG 2 cut(s) 272, 2151
Aor51HI AGCGCT 1 cut(s) 2258
ApaI GGGCCC 1 cut(s) 363
ApoI RAATTY 7 cut(s) 97, 443, 2076, 2102, 2795, 3062, 3413
AseI ATTAAT 1 cut(s) 2220
Asp700I GAANNNNTTC 3 cut(s) 1344, 2258, 3207
Asp718I GGTACC 2 cut(s) 963, 2608
AspLEI GCGC 5 cut(s) 126, 376, 2259, 2761, 3239
AspS9I GGNCC 8 cut(s) 327, 359, 360, 802, 952, 1501, 2452, 3430
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 8 cut(s) 148, 890, 1276, 1960, 2885, 2991, 3015, 3414
AsuII TTCGAA 2 cut(s) 447, 605
AvaI CYCGRG 2 cut(s) 272, 2151
AvaII GGWCC 3 cut(s) 802, 952, 1501
BaeGI GKGCMC 2 cut(s) 363, 750
BanI GGYRCC 4 cut(s) 239, 745, 963, 2608
BanII GRGCYC 2 cut(s) 318, 363
BauI CACGAG 2 cut(s) 2028, 2433
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 3 cut(s) 2633, 3210, 3546
BbvCI CCTCAGC 1 cut(s) 1788
BceAI ACGGC 5 cut(s) 239, 306, 810, 1602, 2885
BcgI CGANNNNNNTGC 2 cut(s) 1393, 1427
BciT130I CCWGG 3 cut(s) 346, 1077, 3316
BciVI GTATCC 1 cut(s) 3120
BclI TGATCA 2 cut(s) 2659, 3568
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 4 cut(s) 690, 827, 849, 1399
BcuI ACTAGT 1 cut(s) 995
BfmI CTRYAG 2 cut(s) 119, 873
BfoI RGCGCY 3 cut(s) 127, 2260, 2762
BfrI CTTAAG 2 cut(s) 977, 1040
BfuAI ACCTGC 1 cut(s) 390
BfuI GTATCC 1 cut(s) 3120
BglI GCCNNNNNGGC 1 cut(s) 2336
BglII AGATCT 1 cut(s) 3352
BlpI GCTNAGC 1 cut(s) 1686
BmcAI AGTACT 2 cut(s) 2360, 2996
Bme1390I CCNGG 4 cut(s) 313, 346, 1077, 3316
Bme18I GGWCC 3 cut(s) 802, 952, 1501
BmeRI GACNNNNNGTC 1 cut(s) 703
BmeT110I CYCGRG 2 cut(s) 272, 2151
BmgT120I GGNCC 8 cut(s) 327, 359, 360, 802, 952, 1501, 2452, 3430
BmrFI CCNGG 4 cut(s) 313, 346, 1077, 3316
BpiI GAAGAC 3 cut(s) 2633, 3210, 3546
BplI GAGNNNNNCTC 2 cut(s) 2416, 2448
BpmI CTGGAG 3 cut(s) 1121, 2350, 3569
Bpu10I CCTNAGC 3 cut(s) 666, 1788, 1992
Bpu1102I GCTNAGC 1 cut(s) 1686
Bpu14I TTCGAA 2 cut(s) 447, 605
BpuMI CCSGG 1 cut(s) 313
Bsa29I ATCGAT 1 cut(s) 408
BsaAI YACGTR 2 cut(s) 368, 3101
BsaBI GATNNNNATC 2 cut(s) 426, 2664
BsaI GGTCTC 1 cut(s) 849
BsaJI CCNNGG 8 cut(s) 187, 322, 839, 1590, 1906, 2311, 2331, 2901
BsaWI WCCGGW 2 cut(s) 853, 3263
Bse118I RCCGGY 1 cut(s) 742
Bse1I ACTGG 4 cut(s) 337, 2367, 2422, 3130
Bse3DI GCAATG 1 cut(s) 2676
Bse8I GATNNNNATC 2 cut(s) 426, 2664
BseBI CCWGG 3 cut(s) 346, 1077, 3316
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 8 cut(s) 187, 322, 839, 1590, 1906, 2311, 2331, 2901
BseJI GATNNNNATC 2 cut(s) 426, 2664
BseMI GCAATG 1 cut(s) 2676
BseMII CTCAG 5 cut(s) 680, 1677, 1779, 2414, 2483
BseNI ACTGG 4 cut(s) 337, 2367, 2422, 3130
BseRI GAGGAG 6 cut(s) 167, 1118, 1409, 2996, 3330, 3352
BseSI GKGCMC 2 cut(s) 363, 750
BseX3I CGGCCG 1 cut(s) 319
BseYI CCCAGC 2 cut(s) 1112, 2009
BsgI GTGCAG 3 cut(s) 1713, 2994, 3493
Bsh1236I CGCG 2 cut(s) 374, 547
Bsh1285I CGRYCG 1 cut(s) 322
BshNI GGYRCC 4 cut(s) 239, 745, 963, 2608
BshVI ATCGAT 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 322
BsiHKCI CYCGRG 2 cut(s) 272, 2151
BsiSI CCGG 4 cut(s) 312, 743, 854, 3264
BslFI GGGAC 4 cut(s) 242, 1422, 1924, 2553
BsmAI GTCTC 4 cut(s) 690, 827, 849, 1399
BsmFI GGGAC 4 cut(s) 242, 1422, 1924, 2553
BsmI GAATGC 2 cut(s) 1799, 2139
Bso31I GGTCTC 1 cut(s) 849
BsoBI CYCGRG 2 cut(s) 272, 2151
Bsp119I TTCGAA 2 cut(s) 447, 605
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 318, 363, 750
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
Bsp1720I GCTNAGC 1 cut(s) 1686
Bsp19I CCATGG 2 cut(s) 1590, 1906
BspCNI CTCAG 5 cut(s) 679, 1678, 1780, 2415, 2482
BspDI ATCGAT 1 cut(s) 408
BspFNI CGCG 2 cut(s) 374, 547
BspHI TCATGA 1 cut(s) 2662
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 3 cut(s) 1556, 2660, 3616
BspQI GCTCTTC 1 cut(s) 1862
BspT104I TTCGAA 2 cut(s) 447, 605
BspT107I GGYRCC 4 cut(s) 239, 745, 963, 2608
BspTI CTTAAG 2 cut(s) 977, 1040
BspTNI GGTCTC 1 cut(s) 849
BsrDI GCAATG 1 cut(s) 2676
BsrFI RCCGGY 1 cut(s) 742
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 4 cut(s) 337, 2367, 2422, 3130
BssAI RCCGGY 1 cut(s) 742
BssECI CCNNGG 8 cut(s) 187, 322, 839, 1590, 1906, 2311, 2331, 2901
BssMI GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
BssSI CACGAG 2 cut(s) 2028, 2433
BssT1I CCWWGG 4 cut(s) 1590, 1906, 2311, 2331
Bst2BI CACGAG 2 cut(s) 2028, 2433
Bst2UI CCWGG 3 cut(s) 346, 1077, 3316
Bst6I CTCTTC 9 cut(s) 222, 576, 635, 716, 1749, 1862, 2400, 2627, 2961
BstAFI CTTAAG 2 cut(s) 977, 1040
BstAUI TGTACA 1 cut(s) 651
BstBAI YACGTR 2 cut(s) 368, 3101
BstBI TTCGAA 2 cut(s) 447, 605
BstDSI CCRYGG 5 cut(s) 322, 839, 1590, 1906, 2901
BstFNI CGCG 2 cut(s) 374, 547
BstH2I RGCGCY 3 cut(s) 127, 2260, 2762
BstHHI GCGC 5 cut(s) 126, 376, 2259, 2761, 3239
BstKTI GATC 8 cut(s) 618, 976, 1551, 2662, 2668, 3355, 3571, 3624
BstMAI GTCTC 4 cut(s) 690, 827, 849, 1399
BstMBI GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
BstMCI CGRYCG 1 cut(s) 322
BstNI CCWGG 3 cut(s) 346, 1077, 3316
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 4 cut(s) 311, 344, 1075, 3314
BstSFI CTRYAG 2 cut(s) 119, 873
BstSLI GKGCMC 2 cut(s) 363, 750
BstSNI TACGTA 1 cut(s) 3101
BstUI CGCG 2 cut(s) 374, 547
BstV2I GAAGAC 3 cut(s) 2633, 3210, 3546
BstX2I RGATCY 1 cut(s) 3352
BstXI CCANNNNNNTGG 2 cut(s) 1080, 2605
BstYI RGATCY 1 cut(s) 3352
BstZI CGGCCG 1 cut(s) 319
Bsu15I ATCGAT 1 cut(s) 408
BsuI GTATCC 1 cut(s) 3120
BsuTUI ATCGAT 1 cut(s) 408
BtgI CCRYGG 5 cut(s) 322, 839, 1590, 1906, 2901
BtsI GCAGTG 1 cut(s) 2754
BtsIMutI CAGTG 6 cut(s) 330, 654, 1380, 2166, 2378, 2754
BveI ACCTGC 1 cut(s) 390
CaiI CAGNNNCTG 2 cut(s) 1700, 3170
CciI TCATGA 1 cut(s) 2662
CfoI GCGC 5 cut(s) 126, 376, 2259, 2761, 3239
Cfr10I RCCGGY 1 cut(s) 742
Cfr13I GGNCC 8 cut(s) 327, 359, 360, 802, 952, 1501, 2452, 3430
ClaI ATCGAT 1 cut(s) 408
CseI GACGC 1 cut(s) 2583
CsiI ACCWGGT 2 cut(s) 344, 1075
CspCI CAANNNNNGTGG 2 cut(s) 2883, 2918
DpnI GATC 8 cut(s) 617, 975, 1550, 2661, 2667, 3354, 3570, 3623
DpnII GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
DraI TTTAAA 1 cut(s) 2095
DrdI GACNNNNNNGTC 1 cut(s) 841
DriI GACNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 841
EaeI YGGCCR 4 cut(s) 319, 396, 1587, 3229
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 9 cut(s) 222, 576, 635, 716, 1749, 1862, 2400, 2627, 2961
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 9 cut(s) 222, 576, 635, 716, 1749, 1862, 2400, 2627, 2961
EciI GGCGGA 2 cut(s) 160, 494
EclXI CGGCCG 1 cut(s) 319
Eco105I TACGTA 1 cut(s) 3101
Eco130I CCWWGG 4 cut(s) 1590, 1906, 2311, 2331
Eco147I AGGCCT 1 cut(s) 2339
Eco24I GRGCYC 2 cut(s) 318, 363
Eco31I GGTCTC 1 cut(s) 849
Eco32I GATATC 2 cut(s) 355, 2539
Eco47I GGWCC 3 cut(s) 802, 952, 1501
Eco47III AGCGCT 1 cut(s) 2258
Eco52I CGGCCG 1 cut(s) 319
Eco57I CTGAAG 7 cut(s) 659, 1698, 1989, 2091, 2375, 2669, 2946
Eco72I CACGTG 1 cut(s) 368
Eco88I CYCGRG 2 cut(s) 272, 2151
EcoO109I RGGNCCY 1 cut(s) 1501
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 344, 1075, 3314
EcoRV GATATC 2 cut(s) 355, 2539
EcoT14I CCWWGG 4 cut(s) 1590, 1906, 2311, 2331
EcoT38I GRGCYC 2 cut(s) 318, 363
ErhI CCWWGG 4 cut(s) 1590, 1906, 2311, 2331
FalI AAGNNNNNCTT 4 cut(s) 951, 983, 2823, 2855
FaqI GGGAC 4 cut(s) 242, 1422, 1924, 2553
FauI CCCGC 3 cut(s) 259, 275, 370
FauNDI CATATG 1 cut(s) 1874
FbaI TGATCA 2 cut(s) 2659, 3568
FriOI GRGCYC 2 cut(s) 318, 363
GlaI GCGC 5 cut(s) 125, 375, 2258, 2760, 3238
GsaI CCCAGC 2 cut(s) 1116, 2013
GsuI CTGGAG 3 cut(s) 1121, 2350, 3569
HaeII RGCGCY 3 cut(s) 127, 2260, 2762
HapII CCGG 4 cut(s) 312, 743, 854, 3264
HgaI GACGC 1 cut(s) 2583
HhaI GCGC 5 cut(s) 126, 376, 2259, 2761, 3239
Hin6I GCGC 5 cut(s) 124, 374, 2257, 2759, 3237
HinP1I GCGC 5 cut(s) 124, 374, 2257, 2759, 3237
HincII GTYRAC 2 cut(s) 2719, 3183
HindII GTYRAC 2 cut(s) 2719, 3183
HindIII AAGCTT 1 cut(s) 2046
HpaII CCGG 4 cut(s) 312, 743, 854, 3264
HphI GGTGA 8 cut(s) 148, 890, 1276, 1960, 2885, 2991, 3015, 3414
Hpy166II GTNNAC 6 cut(s) 654, 952, 2618, 2719, 3162, 3183
Hpy8I GTNNAC 6 cut(s) 654, 952, 2618, 2719, 3162, 3183
Hpy99I CGWCG 1 cut(s) 709
HpyCH4IV ACGT 2 cut(s) 367, 3100
HpySE526I ACGT 2 cut(s) 367, 3100
HspAI GCGC 5 cut(s) 124, 374, 2257, 2759, 3237
KpnI GGTACC 2 cut(s) 967, 2612
Ksp22I TGATCA 2 cut(s) 2659, 3568
Kzo9I GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
LguI GCTCTTC 1 cut(s) 1862
LmnI GCTCC 8 cut(s) 87, 784, 818, 1294, 1314, 1381, 1988, 2369
MabI ACCWGGT 2 cut(s) 344, 1075
MaeII ACGT 2 cut(s) 367, 3100
MaeIII GTNAC 5 cut(s) 790, 856, 1948, 2749, 3285
MalI GATC 8 cut(s) 617, 975, 1550, 2661, 2667, 3354, 3570, 3623
MboI GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
MfeI CAATTG 4 cut(s) 149, 1136, 1734, 2193
MflI RGATCY 1 cut(s) 3352
MhlI GDGCHC 3 cut(s) 318, 363, 750
MlyI GAGTC 5 cut(s) 161, 536, 829, 3276, 3560
MmeI TCCRAC 5 cut(s) 189, 207, 220, 1061, 1545
MroXI GAANNNNTTC 3 cut(s) 1344, 2258, 3207
MslI CAYNNNNRTG 2 cut(s) 1589, 2603
MspA1I CMGCKG 4 cut(s) 1091, 2978, 3234, 3427
MspCI CTTAAG 2 cut(s) 977, 1040
MspI CCGG 4 cut(s) 312, 743, 854, 3264
MspR9I CCNGG 4 cut(s) 313, 346, 1077, 3316
MunI CAATTG 4 cut(s) 149, 1136, 1734, 2193
Mva1269I GAATGC 2 cut(s) 1799, 2139
MvaI CCWGG 3 cut(s) 346, 1077, 3316
MvnI CGCG 2 cut(s) 374, 547
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 2 cut(s) 1590, 1906
NdeI CATATG 1 cut(s) 1874
NdeII GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
NmeAIII GCCGAG 3 cut(s) 297, 1030, 3066
NmuCI GTSAC 2 cut(s) 1948, 2749
NspI RCATGY 1 cut(s) 791
NspV TTCGAA 2 cut(s) 447, 605
PaeR7I CTCGAG 1 cut(s) 272
PagI TCATGA 1 cut(s) 2662
PceI AGGCCT 1 cut(s) 2339
PciSI GCTCTTC 1 cut(s) 1862
PcsI WCGNNNNNNNCGW 1 cut(s) 836
PctI GAATGC 2 cut(s) 1799, 2139
PdmI GAANNNNTTC 3 cut(s) 1344, 2258, 3207
PflMI CCANNNNNTGG 3 cut(s) 692, 2768, 2870
PfoI TCCNGGA 1 cut(s) 3314
PleI GAGTC 5 cut(s) 161, 536, 829, 3275, 3559
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 5 cut(s) 161, 536, 829, 3275, 3559
Ppu21I YACGTR 2 cut(s) 368, 3101
PpuMI RGGWCCY 1 cut(s) 1501
PshBI ATTAAT 1 cut(s) 2220
PsiI TTATAA 1 cut(s) 2274
Psp5II RGGWCCY 1 cut(s) 1501
Psp6I CCWGG 3 cut(s) 344, 1075, 3314
PspCI CACGTG 1 cut(s) 368
PspFI CCCAGC 2 cut(s) 1112, 2009
PspGI CCWGG 3 cut(s) 344, 1075, 3314
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 8 cut(s) 327, 359, 360, 802, 952, 1501, 2452, 3430
PspPPI RGGWCCY 1 cut(s) 1501
PspXI VCTCGAGB 1 cut(s) 272
PstI CTGCAG 1 cut(s) 123
PstNI CAGNNNCTG 2 cut(s) 1700, 3170
PsuI RGATCY 1 cut(s) 3352
PvuII CAGCTG 2 cut(s) 1091, 2978
RseI CAYNNNNRTG 2 cut(s) 1589, 2603
SapI GCTCTTC 1 cut(s) 1862
Sau3AI GATC 8 cut(s) 615, 973, 1548, 2659, 2665, 3352, 3568, 3621
Sau96I GGNCC 8 cut(s) 327, 359, 360, 802, 952, 1501, 2452, 3430
ScaI AGTACT 2 cut(s) 2360, 2996
SchI GAGTC 5 cut(s) 161, 536, 829, 3276, 3560
ScrFI CCNGG 4 cut(s) 313, 346, 1077, 3316
SduI GDGCHC 3 cut(s) 318, 363, 750
SexAI ACCWGGT 2 cut(s) 344, 1075
SfcI CTRYAG 2 cut(s) 119, 873
Sfr274I CTCGAG 1 cut(s) 272
SfuI TTCGAA 2 cut(s) 447, 605
SinI GGWCC 3 cut(s) 802, 952, 1501
SlaI CTCGAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 1589, 2603
SmlI CTYRAG 3 cut(s) 272, 977, 1040
SmoI CTYRAG 3 cut(s) 272, 977, 1040
SnaBI TACGTA 1 cut(s) 3101
SpeI ACTAGT 1 cut(s) 995
SseBI AGGCCT 1 cut(s) 2339
StuI AGGCCT 1 cut(s) 2339
StyD4I CCNGG 4 cut(s) 311, 344, 1075, 3314
StyI CCWWGG 4 cut(s) 1590, 1906, 2311, 2331
TaiI ACGT 2 cut(s) 370, 3103
TaqI TCGA 9 cut(s) 90, 273, 408, 447, 605, 707, 1250, 2500, 3270
TatI WGTACW 5 cut(s) 594, 651, 2358, 2836, 2994
TauI GCSGC 4 cut(s) 240, 374, 1889, 3234
TscAI CASTG 6 cut(s) 337, 661, 1380, 2173, 2385, 2754
TseFI GTSAC 2 cut(s) 1948, 2749
Tsp45I GTSAC 2 cut(s) 1948, 2749
TspGWI ACGGA 5 cut(s) 828, 845, 875, 1216, 2638
TspRI CASTG 6 cut(s) 337, 661, 1380, 2173, 2385, 2754
Van91I CCANNNNNTGG 3 cut(s) 692, 2768, 2870
Vha464I CTTAAG 2 cut(s) 977, 1040
VpaK11BI GGWCC 3 cut(s) 802, 952, 1501
VspI ATTAAT 1 cut(s) 2220
XapI RAATTY 7 cut(s) 97, 443, 2076, 2102, 2795, 3062, 3413
XceI RCATGY 1 cut(s) 791
XhoI CTCGAG 1 cut(s) 272
XmnI GAANNNNTTC 3 cut(s) 1344, 2258, 3207
ZrmI AGTACT 2 cut(s) 2360, 2996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.