Rorug03G0266300

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000856
Physical Location & Seq
Reverse (-)
26104509 .. 26107193
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0266300.1

Sequence Viewer

Length: 1209 bp
ATGGAAAGAACCGAAAGCATCCCACTACAGGCACCAACTTATGGAAACCTAATCACTGTTCTAAGCATTGATGGAGGTGGAATAAGAGCGCTTATCCCAGGAACAATCCTTGCTTTTCTTGAATCTGAGCTTCAGAAGCTGGATGGGGAAGATGTAAGACTCGCCGACTACTTTGATGTGATTTCAGGGACAAGCACAGGAGGTCTTGTGACTGCCATGCTTACAACCCCAGATGAGAATAACAGACCGATGTTTGCTGCTAAAGATATAAAGGACTTCTACCTTACTCATAGCCCCAAAATCTTCCCCCAGAAGATATGGTGGCTATTTCCTCGTCTTATAAACATCATCAAATCTCTAGTAGGACCAAAATACGATGGGAAGTATCTACATAGCTTGATTAGGGAAAAACTTGGTGACAAGAAACTGCATCAGACATTGACTAATGTTGTCATTCCTGCGTTTGATATAAAGAATCTCCAGCCAACAATCTTTTCCAGCTTTGAGGTGAAAAAGAAGCCATCCTTTGATGCTTTGCTTTCAGACATAAGCATCGCAACCTCAGCAGCACCAACTTATCTTCCAGCTCATTATTTTGAAACCAAGGACGCGGAAGGGAAAGTAAGCGAATTCAACCTTATAGATGGTGGTGTAGCTGCAAATAATCCGACTCTAGTTGCTATTGGTGAAGTTACAAAGGAAATAATCAAGGGGAGCTCCGATTTTTTCCCTATAAAACCCATGGACTATGGAAGGTTTTTGGTTATATCATTAGGAACCGGCTCACCAAAAATTGAATTGAAGTACAATGCGCCGAGCGCAGCTAAATGGGGTATCTTGAATTGGTTAACCAGCGGTGGTTCCACTCCAATCATTAACATTTTTAGTCATGCAAGTGCCGATATGGTCGATCTTCACCTTTCTGAAGTCTTCCAAGCCCTTCACTCAGAGAGAAATTATCTTCGAATTCAGGATGATACGCTAAGTGGACAAGTATCTTCGGTGGATGTAGCCACAAAGAAAAATTTGAACGATCTCCTGGGAGTTGGAGAAGGCCTATTGAAGAAACCAGTGTCTAGGGTTAATTTGGAGAATGGCAGATTTGAGGCTTGCAATCATGAGACCAACGAAGAGGCTCTTATAAGGTTTGCAAAACTACTCTCTGAAGAGAAGTGGCTTCGCCTTGCAAGGTCGCCCCACGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

402

Amino Acids

44.36

Weight (kDa)

6.33

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 21 - 228 5.9e-25 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 341, 1142
AccB1I GGYRCC 1 cut(s) 31
AccB7I CCANNNNNTGG 1 cut(s) 41
AccII CGCG 1 cut(s) 611
AciI CCGC 2 cut(s) 611, 855
AcsI RAATTY 3 cut(s) 629, 966, 1024
AcuI CTGAAG 3 cut(s) 116, 945, 1185
AfaI GTAC 1 cut(s) 806
AfeI AGCGCT 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 28, 41
AgsI TTSAA 8 cut(s) 122, 599, 634, 797, 802, 841, 1030, 1063
AjnI CCWGG 2 cut(s) 97, 1038
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 8 cut(s) 130, 139, 396, 501, 587, 656, 717, 824
AluI AGCT 8 cut(s) 130, 139, 396, 501, 587, 656, 717, 824
Alw21I GWGCWC 1 cut(s) 719
Alw26I GTCTC 1 cut(s) 1115
AlwNI CAGNNNCTG 1 cut(s) 139
Aor51HI AGCGCT 1 cut(s) 90
AoxI GGCC 1 cut(s) 1054
ApeKI GCWGC 4 cut(s) 257, 566, 656, 821
ApoI RAATTY 3 cut(s) 629, 966, 1024
AspLEI GCGC 3 cut(s) 91, 814, 821
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 5 cut(s) 428, 520, 698, 777, 908
AsuII TTCGAA 1 cut(s) 964
AvaII GGWCC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 922
Bbv12I GWGCWC 1 cut(s) 719
BbvCI CCTCAGC 1 cut(s) 562
BbvI GCAGC 4 cut(s) 244, 578, 643, 833
BccI CCATC 5 cut(s) 65, 137, 371, 529, 638
BciT130I CCWGG 2 cut(s) 99, 1040
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 3 cut(s) 359, 674, 1077
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 4 cut(s) 258, 567, 657, 822
BlsI GCNGC 4 cut(s) 259, 568, 658, 823
Bme1390I CCNGG 2 cut(s) 99, 1040
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 3 cut(s) 33, 778, 862
BmrFI CCNGG 2 cut(s) 99, 1040
BmsI GCATC 4 cut(s) 27, 439, 520, 561
BpiI GAAGAC 1 cut(s) 922
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 562
Bpu14I TTCGAA 1 cut(s) 964
BsaI GGTCTC 1 cut(s) 1115
BsaJI CCNNGG 5 cut(s) 97, 603, 741, 1039, 1198
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 41
Bse118I RCCGGY 1 cut(s) 779
Bse1I ACTGG 1 cut(s) 1070
BseBI CCWGG 2 cut(s) 99, 1040
BseDI CCNNGG 5 cut(s) 97, 603, 741, 1039, 1198
BseGI GGATG 5 cut(s) 18, 148, 521, 979, 1012
BseLI CCNNNNNNNGG 2 cut(s) 28, 41
BseMII CTCAG 3 cut(s) 117, 576, 960
BseNI ACTGG 1 cut(s) 1070
BseXI GCAGC 4 cut(s) 244, 578, 643, 833
Bsh1236I CGCG 1 cut(s) 611
BshFI GGCC 1 cut(s) 1056
BshNI GGYRCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 719
BsiSI CCGG 1 cut(s) 780
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 28, 41
BsmAI GTCTC 1 cut(s) 1115
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 1056
Bso31I GGTCTC 1 cut(s) 1115
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 1 cut(s) 719
Bsp143I GATC 2 cut(s) 910, 1033
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 2 cut(s) 611, 855
BspANI GGCC 1 cut(s) 1056
BspCNI CTCAG 3 cut(s) 118, 575, 959
BspFNI CGCG 1 cut(s) 611
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 3 cut(s) 33, 778, 862
BspT104I TTCGAA 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 1115
BsrFI RCCGGY 1 cut(s) 779
BsrI ACTGG 1 cut(s) 1070
BssAI RCCGGY 1 cut(s) 779
BssECI CCNNGG 5 cut(s) 97, 603, 741, 1039, 1198
BssMI GATC 2 cut(s) 910, 1033
BssT1I CCWWGG 2 cut(s) 603, 741
Bst2UI CCWGG 2 cut(s) 99, 1040
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 1125, 1161
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 1 cut(s) 1111
BstDEI CTNAG 5 cut(s) 62, 126, 562, 946, 983
BstDSI CCRYGG 2 cut(s) 741, 1198
BstF5I GGATG 5 cut(s) 18, 148, 521, 979, 1012
BstFNI CGCG 1 cut(s) 611
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 3 cut(s) 91, 814, 821
BstKTI GATC 2 cut(s) 913, 1036
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 2 cut(s) 910, 1033
BstMWI GCNNNNNNNGC 3 cut(s) 136, 563, 818
BstNI CCWGG 2 cut(s) 99, 1040
BstSCI CCNGG 2 cut(s) 97, 1038
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 1 cut(s) 611
BstV1I GCAGC 4 cut(s) 244, 578, 643, 833
BstV2I GAAGAC 1 cut(s) 922
BsuRI GGCC 1 cut(s) 1056
BtgI CCRYGG 2 cut(s) 741, 1198
BtgZI GCGATG 1 cut(s) 538
BtsCI GGATG 5 cut(s) 18, 148, 521, 979, 1012
BtsIMutI CAGTG 2 cut(s) 54, 1077
Cac8I GCNNGC 1 cut(s) 1111
CaiI CAGNNNCTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 3 cut(s) 91, 814, 821
Cfr10I RCCGGY 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 617
Csp6I GTAC 1 cut(s) 805
CviAII CATG 4 cut(s) 217, 742, 890, 1118
CviQI GTAC 1 cut(s) 805
DdeI CTNAG 5 cut(s) 62, 126, 562, 946, 983
DpnI GATC 2 cut(s) 912, 1035
DpnII GATC 2 cut(s) 910, 1033
Eam1104I CTCTTC 2 cut(s) 1125, 1161
EarI CTCTTC 2 cut(s) 1125, 1161
Ecl136II GAGCTC 1 cut(s) 717
Eco130I CCWWGG 2 cut(s) 603, 741
Eco147I AGGCCT 1 cut(s) 1056
Eco24I GRGCYC 1 cut(s) 719
Eco31I GGTCTC 1 cut(s) 1115
Eco47I GGWCC 1 cut(s) 365
Eco47III AGCGCT 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 717
Eco57I CTGAAG 3 cut(s) 116, 945, 1185
EcoICRI GAGCTC 1 cut(s) 717
EcoRI GAATTC 2 cut(s) 629, 966
EcoRII CCWGG 2 cut(s) 97, 1038
EcoT14I CCWWGG 2 cut(s) 603, 741
EcoT38I GRGCYC 1 cut(s) 719
ErhI CCWWGG 2 cut(s) 603, 741
FaeI CATG 4 cut(s) 220, 745, 893, 1121
FalI AAGNNNNNCTT 4 cut(s) 509, 541, 1122, 1154
FaqI GGGAC 1 cut(s) 202
FatI CATG 4 cut(s) 216, 741, 889, 1117
Fnu4HI GCNGC 4 cut(s) 258, 567, 657, 822
FokI GGATG 5 cut(s) 5, 155, 508, 986, 1019
FriOI GRGCYC 1 cut(s) 719
Fsp4HI GCNGC 4 cut(s) 258, 567, 657, 822
FspBI CTAG 3 cut(s) 359, 674, 1077
GlaI GCGC 3 cut(s) 90, 813, 820
GluI GCNGC 4 cut(s) 258, 567, 657, 822
GsuI CTGGAG 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 1 cut(s) 1056
HapII CCGG 1 cut(s) 780
HgaI GACGC 1 cut(s) 617
HhaI GCGC 3 cut(s) 91, 814, 821
Hin1II CATG 4 cut(s) 220, 745, 893, 1121
Hin6I GCGC 3 cut(s) 89, 812, 819
HinP1I GCGC 3 cut(s) 89, 812, 819
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HinfI GANTC 4 cut(s) 122, 159, 475, 670
HpaI GTTAAC 1 cut(s) 849
HpaII CCGG 1 cut(s) 780
HphI GGTGA 5 cut(s) 428, 520, 698, 777, 908
Hpy166II GTNNAC 2 cut(s) 849, 989
Hpy188I TCNGA 9 cut(s) 127, 135, 435, 544, 669, 721, 925, 949, 1165
Hpy188III TCNNGA 4 cut(s) 119, 838, 971, 1118
Hpy8I GTNNAC 2 cut(s) 849, 989
HpyAV CCTTC 4 cut(s) 608, 747, 950, 1046
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 6 cut(s) 430, 659, 893, 1113, 1151, 1187
HpyF10VI GCNNNNNNNGC 3 cut(s) 136, 563, 818
HpyF3I CTNAG 5 cut(s) 62, 126, 562, 946, 983
Hsp92II CATG 4 cut(s) 220, 745, 893, 1121
HspAI GCGC 3 cut(s) 89, 812, 819
KspAI GTTAAC 1 cut(s) 849
Kzo9I GATC 2 cut(s) 910, 1033
LmnI GCTCC 2 cut(s) 714, 722
Lsp1109I GCAGC 4 cut(s) 244, 578, 643, 833
LweI GCATC 4 cut(s) 27, 439, 520, 561
MaeI CTAG 3 cut(s) 359, 674, 1077
MaeIII GTNAC 3 cut(s) 208, 416, 691
MalI GATC 2 cut(s) 912, 1035
MboI GATC 2 cut(s) 910, 1033
MhlI GDGCHC 1 cut(s) 719
MluCI AATT 8 cut(s) 629, 792, 797, 841, 955, 966, 1024, 1084
MlyI GAGTC 2 cut(s) 153, 664
MmeI TCCRAC 2 cut(s) 692, 1027
MnlI CCTC 7 cut(s) 68, 194, 342, 499, 571, 1099, 1126
MseI TTAA 3 cut(s) 848, 876, 1083
MslI CAYNNNNRTG 1 cut(s) 894
MspA1I CMGCKG 1 cut(s) 855
MspI CCGG 1 cut(s) 780
MspR9I CCNGG 2 cut(s) 99, 1040
MvaI CCWGG 2 cut(s) 99, 1040
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 3 cut(s) 136, 563, 818
NcoI CCATGG 1 cut(s) 741
NdeII GATC 2 cut(s) 910, 1033
NlaIII CATG 4 cut(s) 220, 745, 893, 1121
NlaIV GGNNCC 3 cut(s) 33, 778, 862
NmeAIII GCCGAG 1 cut(s) 840
NmuCI GTSAC 2 cut(s) 208, 416
NspV TTCGAA 1 cut(s) 964
PagI TCATGA 1 cut(s) 1117
PceI AGGCCT 1 cut(s) 1056
PfeI GAWTC 2 cut(s) 122, 475
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 4 cut(s) 259, 568, 658, 823
PleI GAGTC 2 cut(s) 153, 664
PpsI GAGTC 2 cut(s) 153, 664
PsiI TTATAA 2 cut(s) 341, 1142
Psp124BI GAGCTC 1 cut(s) 719
Psp6I CCWGG 2 cut(s) 97, 1038
PspGI CCWGG 2 cut(s) 97, 1038
PspN4I GGNNCC 3 cut(s) 33, 778, 862
PspPI GGNCC 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 806
RsaNI GTAC 1 cut(s) 805
RseI CAYNNNNRTG 1 cut(s) 894
SacI GAGCTC 1 cut(s) 719
SaqAI TTAA 3 cut(s) 848, 876, 1083
SatI GCNGC 4 cut(s) 258, 567, 657, 822
Sau3AI GATC 2 cut(s) 910, 1033
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 2 cut(s) 153, 664
ScrFI CCNGG 2 cut(s) 99, 1040
SduI GDGCHC 1 cut(s) 719
SfaNI GCATC 4 cut(s) 27, 439, 520, 561
SfcI CTRYAG 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 894
Sse9I AATT 8 cut(s) 629, 792, 797, 841, 955, 966, 1024, 1084
SseBI AGGCCT 1 cut(s) 1056
SsiI CCGC 2 cut(s) 611, 855
SspMI CTAG 3 cut(s) 359, 674, 1077
SstI GAGCTC 1 cut(s) 719
StuI AGGCCT 1 cut(s) 1056
StyD4I CCNGG 2 cut(s) 97, 1038
StyI CCWWGG 2 cut(s) 603, 741
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 909, 964
TaqII GACCGA 1 cut(s) 262
TasI AATT 8 cut(s) 629, 792, 797, 841, 955, 966, 1024, 1084
TatI WGTACW 1 cut(s) 804
TfiI GAWTC 2 cut(s) 122, 475
Tru1I TTAA 3 cut(s) 848, 876, 1083
Tru9I TTAA 3 cut(s) 848, 876, 1083
TscAI CASTG 2 cut(s) 61, 1077
TseFI GTSAC 2 cut(s) 208, 416
TseI GCWGC 4 cut(s) 257, 566, 656, 821
Tsp45I GTSAC 2 cut(s) 208, 416
TspRI CASTG 2 cut(s) 61, 1077
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 3 cut(s) 629, 966, 1024
XspI CTAG 3 cut(s) 359, 674, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.