Rh6BG205400

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000856
Physical Location & Seq
Reverse (-)
38666393 .. 38667163
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG205400.1

Sequence Viewer

Length: 771 bp
ATGCAGACTAATCTAAAGCATCCACCTAGTTGGATTGCGGCTGCGAGGTTGGCAAAAGTGGCGGGGAATATTCAGGCAGCAAGGCAATTGATCCAAAAAGGGTGTGAGGAATGTCCCAAGAGTGAGGATGTGTGGTTGGAGGCATGTAGGCTTGCCAGTCCTGATGGAGCCAAGGTTGTGATTGCTGCTGGAGTCAAGTCGATACCCAATTCAGTCAAGCTGTGGATGCAGGCGGCGAAATTGGAGCATGATGACTCGAATAAGAGTAGGGTGTTGAGGAAAGGGTCGGAACACATTCCTGATTCTGTTAGGCTGTGGAAGGCGGTGGTAGAGCTGGCAAATGAGGAGGATGCCAGACTTTTGCTTCAAAGGGTTGTGGAGTGTTGTCCTTTTCACATTCAGTTGTGGCTTGCACTAGCGAGATTGGAAACTTATGAAAATGCCAGGAATGTCCTTAACAAGGCTGGCGAGAAGCTTTCGAATAAGCCTGCCATTTGTATTACTGCAGCAAAGTTGGAAGAAGCTAATGGGAACACATCAACAGTTGCGAACATTATTGAAAGGGGTATAAGGGATTTGCAAAGAGAGGGGTTGGTGATTGATAGAGAAGCATGGATGAAGGAGGCTGAAACTGCCGAGCGAGCAGGGTCTGTGGCAACTTGCCAAGCCATTATTTGGAACACAATTGGGATTGTTGTGGAGGAAGAAGATAGGAAGAGGACATGGGTTGCTGATGCAGAGGAGTGCAAGAAACGTGGTTCCATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

256

Amino Acids

28.44

Weight (kDa)

6.91

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 675
AciI CCGC 4 cut(s) 38, 62, 233, 323
AclWI GGATC 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 460, 675
AgsI TTSAA 3 cut(s) 368, 560, 767
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 4 cut(s) 220, 334, 475, 524
AluI AGCT 4 cut(s) 220, 334, 475, 524
AlwI GGATC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 650
ApeKI GCWGC 4 cut(s) 41, 77, 185, 506
Asp700I GAANNNNTTC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 607
AsuII TTCGAA 1 cut(s) 479
BbvI GCAGC 4 cut(s) 28, 89, 172, 518
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 445
BfaI CTAG 2 cut(s) 27, 416
BfmI CTRYAG 1 cut(s) 504
BisI GCNGC 6 cut(s) 39, 42, 78, 186, 234, 507
BlsI GCNGC 6 cut(s) 40, 43, 79, 187, 235, 508
Bme1390I CCNGG 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 169, 760
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 4 cut(s) 28, 216, 340, 724
BpmI CTGGAG 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 675
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 5 cut(s) 19, 133, 231, 355, 621
BseLI CCNNNNNNNGG 2 cut(s) 460, 675
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 2 cut(s) 359, 755
BseXI GCAGC 4 cut(s) 28, 89, 172, 518
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 460, 675
BsmFI GGGAC 1 cut(s) 99
Bsp119I TTCGAA 1 cut(s) 479
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 4 cut(s) 38, 62, 233, 323
BspLI GGNNCC 2 cut(s) 169, 760
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 479
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 7 cut(s) 153, 231, 336, 411, 466, 489, 642
BstENI CCTNNNNNAGG 1 cut(s) 458
BstF5I GGATG 5 cut(s) 19, 133, 231, 355, 621
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 5 cut(s) 50, 59, 226, 632, 641
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 443
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 4 cut(s) 28, 89, 172, 518
BstXI CCANNNNNNTGG 1 cut(s) 30
BtsCI GGATG 5 cut(s) 19, 133, 231, 355, 621
Cac8I GCNNGC 7 cut(s) 153, 231, 336, 411, 466, 489, 642
CaiI CAGNNNCTG 1 cut(s) 650
CspCI CAANNNNNGTGG 2 cut(s) 736, 771
CviAII CATG 4 cut(s) 144, 248, 612, 723
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Eco130I CCWWGG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 147, 251, 615, 726
FaiI YATR 6 cut(s) 145, 249, 435, 569, 613, 724
FaqI GGGAC 1 cut(s) 99
FatI CATG 4 cut(s) 143, 247, 611, 722
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 6 cut(s) 39, 42, 78, 186, 234, 507
FokI GGATG 5 cut(s) 6, 140, 238, 362, 628
Fsp4HI GCNGC 6 cut(s) 39, 42, 78, 186, 234, 507
FspBI CTAG 2 cut(s) 27, 416
GluI GCNGC 6 cut(s) 39, 42, 78, 186, 234, 507
GsuI CTGGAG 1 cut(s) 210
Hin1II CATG 4 cut(s) 147, 251, 615, 726
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 3 cut(s) 192, 254, 302
HphI GGTGA 1 cut(s) 607
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 161, 299
HpyAV CCTTC 2 cut(s) 313, 613
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 1 cut(s) 754
HpyCH4V TGCA 7 cut(s) 4, 229, 413, 506, 580, 737, 747
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 59, 226, 632, 641
HpySE526I ACGT 1 cut(s) 754
Hsp92II CATG 4 cut(s) 147, 251, 615, 726
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 167, 244
Lsp1109I GCAGC 4 cut(s) 28, 89, 172, 518
LweI GCATC 4 cut(s) 28, 216, 340, 724
MaeI CTAG 2 cut(s) 27, 416
MaeII ACGT 1 cut(s) 754
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 4 cut(s) 530, 716, 719, 727
MfeI CAATTG 2 cut(s) 86, 684
MluCI AATT 4 cut(s) 86, 208, 239, 684
MlyI GAGTC 2 cut(s) 201, 248
MmeI TCCRAC 4 cut(s) 11, 117, 267, 495
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 445
MunI CAATTG 2 cut(s) 86, 684
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 5 cut(s) 50, 59, 226, 632, 641
NdeII GATC 1 cut(s) 90
NlaIII CATG 4 cut(s) 147, 251, 615, 726
NlaIV GGNNCC 2 cut(s) 169, 760
NmeAIII GCCGAG 1 cut(s) 661
NspI RCATGY 1 cut(s) 147
NspV TTCGAA 1 cut(s) 479
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 675
PkrI GCNGC 6 cut(s) 40, 43, 79, 187, 235, 508
PleI GAGTC 2 cut(s) 200, 248
PpsI GAGTC 2 cut(s) 200, 248
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 169, 760
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 650
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 6 cut(s) 39, 42, 78, 186, 234, 507
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 2 cut(s) 201, 248
ScrFI CCNGG 1 cut(s) 445
SetI ASST 8 cut(s) 28, 50, 177, 222, 336, 477, 526, 757
SfaNI GCATC 4 cut(s) 28, 216, 340, 724
SfcI CTRYAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 479
Sse9I AATT 4 cut(s) 86, 208, 239, 684
SsiI CCGC 4 cut(s) 38, 62, 233, 323
SspI AATATT 1 cut(s) 70
SspMI CTAG 2 cut(s) 27, 416
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 1 cut(s) 757
TaqI TCGA 3 cut(s) 200, 257, 479
TasI AATT 4 cut(s) 86, 208, 239, 684
TauI GCSGC 2 cut(s) 41, 236
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseI GCWGC 4 cut(s) 41, 77, 185, 506
TspDTI ATGAA 2 cut(s) 450, 632
Van91I CCANNNNNTGG 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 458
XceI RCATGY 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 294
XspI CTAG 2 cut(s) 27, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.