RchiOBHm_Chr3g0494641

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000856
Physical Location & Seq
Forward (+)
43470316 .. 43471128
813 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45716

Sequence Viewer

Length: 738 bp
ATGGCTGCTAAGGAGAACTGGCTTGCCGGGGACGTGAATGCTGCCCGTATGATCCTTGAAGAAGCTTCTAAATCCCTTCCCAATTATGAAGAAATTATGCTTGCTGCATTTAAGTTAGAGTTTGAAAATCATGAGCAAGAGAGAGCTAAAATGATTCTTGACAAAACCCGAGCAAGGGTAAACAGTGGAAGAGTATGGACGAAATCAGCAATTCTTCAGAGAGAATTAGGAAACTCTGATGAGGAGAAGAAATTTCTTGAGGAAGGGTTGAAGCGCTTCCCCTCATTCTTTAAATTGTGGTTGATGCTTGGACAGCTAGAGGAACGCCTCAATGATTTTCAAAAAGCCAAGGCCGCGAATGGTCTGAGTAAAGCTCGTGCAGTTCTCACAACAGCTAGGAAGAAAAACTCTCGTAATCCTGAATTGTGGCTTGCTGCTGTTCGAGCTGAACTAAGGCATGGTAATAAGAGGGAAGCTGATACTTTGATGGCAAAGGCTTTGCAGGAGCATGAGTGTCCCAATAGTGGTATCTTGTGGGCAGCATCTATTGGGATGGTACCTGGTCCTCAAAGGAAGACCAAAAGTCTAGATGCCTACAAATATTGTGGTAAGGAAGATCCCCATGTTAATGCTGCTGTGGCCAAGTTATTTTGGCATGAAAGAAAGATAGACAGAGCTATGACTAAGCTCACATGCCCCAGATATTGGAGATTTCTGGACTTTATACAACAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

245

Amino Acids

28.2

Weight (kDa)

9.57

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 556
AccB7I CCANNNNNTGG 1 cut(s) 705
AccII CGCG 1 cut(s) 356
AciI CCGC 1 cut(s) 354
AclWI GGATC 2 cut(s) 46, 611
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 558
AfeI AGCGCT 1 cut(s) 275
AfiI CCNNNNNNNGG 4 cut(s) 174, 175, 524, 705
AgsI TTSAA 4 cut(s) 59, 125, 271, 341
AhdI GACNNNNNGTC 1 cut(s) 582
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 9 cut(s) 65, 146, 316, 374, 395, 446, 476, 677, 688
AluI AGCT 9 cut(s) 65, 146, 316, 374, 395, 446, 476, 677, 688
AlwI GGATC 2 cut(s) 46, 611
Ama87I CYCGRG 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 275
AoxI GGCC 2 cut(s) 351, 639
ApeKI GCWGC 6 cut(s) 5, 41, 104, 434, 539, 632
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 556
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 563
AsuC2I CCSGG 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 563
BalI TGGCCA 1 cut(s) 641
BanI GGYRCC 1 cut(s) 556
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 581
BbvI GCAGC 5 cut(s) 28, 91, 421, 551, 619
BccI CCATC 2 cut(s) 481, 547
BciT130I CCWGG 1 cut(s) 561
BcnI CCSGG 1 cut(s) 28
BfaI CTAG 3 cut(s) 317, 396, 587
BfoI RGCGCY 1 cut(s) 277
BisI GCNGC 7 cut(s) 6, 42, 105, 354, 435, 540, 633
BlsI GCNGC 7 cut(s) 7, 43, 106, 355, 436, 541, 634
Bme1390I CCNGG 2 cut(s) 28, 561
Bme18I GGWCC 1 cut(s) 563
BmeRI GACNNNNNGTC 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 563
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 2 cut(s) 28, 561
BmsI GCATC 3 cut(s) 294, 551, 580
BpiI GAAGAC 1 cut(s) 581
BplI GAGNNNNNCTC 2 cut(s) 358, 390
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 27, 348
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 175, 524, 705
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 2 cut(s) 27, 348
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 4 cut(s) 174, 175, 524, 705
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 5 cut(s) 28, 91, 421, 551, 619
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 2 cut(s) 353, 641
BshNI GGYRCC 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 44, 501
BslI CCNNNNNNNGG 4 cut(s) 174, 175, 524, 705
BsmFI GGGAC 2 cut(s) 44, 501
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 2 cut(s) 353, 641
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 2 cut(s) 51, 616
BspACI CCGC 1 cut(s) 354
BspANI GGCC 2 cut(s) 353, 641
BspCNI CTCAG 1 cut(s) 357
BspFNI CGCG 1 cut(s) 356
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 558
BspPI GGATC 2 cut(s) 46, 611
BspT107I GGYRCC 1 cut(s) 556
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 27, 348
BssMI GATC 2 cut(s) 51, 616
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 24, 102, 432
BstDEI CTNAG 4 cut(s) 9, 365, 452, 684
BstF5I GGATG 1 cut(s) 558
BstFNI CGCG 1 cut(s) 356
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 54, 619
BstMBI GATC 2 cut(s) 51, 616
BstMWI GCNNNNNNNGC 4 cut(s) 313, 353, 443, 638
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 26, 559
BstUI CGCG 1 cut(s) 356
BstV1I GCAGC 5 cut(s) 28, 91, 421, 551, 619
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
BsuRI GGCC 2 cut(s) 353, 641
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 3 cut(s) 24, 102, 432
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 563
CsiI ACCWGGT 1 cut(s) 559
Csp6I GTAC 1 cut(s) 557
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 6 cut(s) 131, 458, 509, 623, 656, 693
CviQI GTAC 1 cut(s) 557
DdeI CTNAG 4 cut(s) 9, 365, 452, 684
DpnI GATC 2 cut(s) 53, 618
DpnII GATC 2 cut(s) 51, 616
DraI TTTAAA 1 cut(s) 292
DriI GACNNNNNGTC 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 184
Eam1105I GACNNNNNGTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 563
Eco47III AGCGCT 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 6 cut(s) 134, 461, 512, 626, 659, 696
FaqI GGGAC 2 cut(s) 44, 501
FatI CATG 6 cut(s) 130, 457, 508, 622, 655, 692
Fnu4HI GCNGC 7 cut(s) 6, 42, 105, 354, 435, 540, 633
FokI GGATG 1 cut(s) 565
Fsp4HI GCNGC 7 cut(s) 6, 42, 105, 354, 435, 540, 633
FspBI CTAG 3 cut(s) 317, 396, 587
GlaI GCGC 1 cut(s) 275
GluI GCNGC 7 cut(s) 6, 42, 105, 354, 435, 540, 633
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 2 cut(s) 353, 641
HapII CCGG 1 cut(s) 27
HhaI GCGC 1 cut(s) 276
Hin1II CATG 6 cut(s) 134, 461, 512, 626, 659, 696
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 154
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 219, 238, 366
Hpy188III TCNNGA 6 cut(s) 131, 158, 257, 419, 587, 716
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 86, 257
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 107, 380, 502
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 353, 443, 638
HpyF3I CTNAG 4 cut(s) 9, 365, 452, 684
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 6 cut(s) 134, 461, 512, 626, 659, 696
HspAI GCGC 1 cut(s) 274
KpnI GGTACC 1 cut(s) 560
Kzo9I GATC 2 cut(s) 51, 616
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 8 cut(s) 4, 40, 432, 488, 546, 573, 701, 712
Lsp1109I GCAGC 5 cut(s) 28, 91, 421, 551, 619
LweI GCATC 3 cut(s) 294, 551, 580
MabI ACCWGGT 1 cut(s) 559
MaeI CTAG 3 cut(s) 317, 396, 587
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 53, 618
MboI GATC 2 cut(s) 51, 616
MboII GAAGA 8 cut(s) 71, 101, 201, 206, 259, 412, 586, 626
MflI RGATCY 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 7 cut(s) 82, 93, 210, 224, 251, 293, 422
MluNI TGGCCA 1 cut(s) 641
MnlI CCTC 7 cut(s) 235, 253, 292, 313, 338, 462, 576
Mox20I TGGCCA 1 cut(s) 641
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 1 cut(s) 641
MseI TTAA 3 cut(s) 111, 291, 627
MslI CAYNNNNRTG 1 cut(s) 627
Msp20I TGGCCA 1 cut(s) 641
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 28, 561
Mva1269I GAATGC 1 cut(s) 43
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 1 cut(s) 356
MwoI GCNNNNNNNGC 4 cut(s) 313, 353, 443, 638
NciI CCSGG 1 cut(s) 28
NdeII GATC 2 cut(s) 51, 616
NlaIII CATG 6 cut(s) 134, 461, 512, 626, 659, 696
NlaIV GGNNCC 1 cut(s) 558
NspI RCATGY 1 cut(s) 696
PagI TCATGA 1 cut(s) 130
PctI GAATGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 705
PkrI GCNGC 7 cut(s) 7, 43, 106, 355, 436, 541, 634
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 563
PsuI RGATCY 1 cut(s) 616
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 3 cut(s) 111, 291, 627
SatI GCNGC 7 cut(s) 6, 42, 105, 354, 435, 540, 633
Sau3AI GATC 2 cut(s) 51, 616
Sau96I GGNCC 1 cut(s) 563
ScrFI CCNGG 2 cut(s) 28, 561
SexAI ACCWGGT 1 cut(s) 559
SfaNI GCATC 3 cut(s) 294, 551, 580
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 7 cut(s) 82, 93, 210, 224, 251, 293, 422
SsiI CCGC 1 cut(s) 354
SspI AATATT 1 cut(s) 602
SspMI CTAG 3 cut(s) 317, 396, 587
StyD4I CCNGG 2 cut(s) 26, 559
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 442
TasI AATT 7 cut(s) 82, 93, 210, 224, 251, 293, 422
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 3 cut(s) 111, 291, 627
Tru9I TTAA 3 cut(s) 111, 291, 627
TscAI CASTG 1 cut(s) 190
TseI GCWGC 6 cut(s) 5, 41, 104, 434, 539, 632
TspDTI ATGAA 2 cut(s) 102, 672
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 1 cut(s) 251
XbaI TCTAGA 1 cut(s) 586
XceI RCATGY 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 3 cut(s) 317, 396, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.