Rmu_sc0000181.1_g000002

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000181.1
OG0000856
Physical Location & Seq
Forward (+)
5413 .. 6462
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000181.1_g000002.1.cds

Sequence Viewer

Length: 882 bp
atggtgttcatcacatctccgaaccacaaaaccctaaacctgaatctcaacccaaaaaccaccaccctccaaaccctcaagctccaaatccagcaaacttcccacatccccatctcccaccagcgcctcttcatctcccaaagcctcaaaatcctaacccaaactgactccaccctcctctctgacctcggcatctcccccctctctaccctaaccctccacatccccttattcggctgcatcaaacccctcgccgtccccaaaccctgcctcgacttcctcaactccaagcctcccgccaattatgtcgtcggcctcggccgtggcgccaccggattcaccactcaaaccgatatcgggccggcccgtgccgctcctgacttgcccgatctgtcgacggggttgccagggaggccccgcctgggaaaggataggagagaggctaggttgaaacaagagattgagaagtacagagcttccaatccgaaaatcacagagcagtttgcgaatttgaagaggcaactgtatacagtttcagttgaggaatgggatcgcatatcggacattggggatgactcagccaggaataagaagaggaagtttgagagctttgtgccggtgcaggatactcttttcgagaaggctaggcaggaacaggagcatgttactgcattggaccccaagagtagggtggcaactggtacagagacgctgtggtcgcaaacaccaattacggatttgactgcagtgggggatggtagaagtactgtgttgtctttgaagttagataggctttcggattctgtttctgggttgatagttgtggaccctaaggggtatctcactgatcttaagagtatgaagattaccagtgatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

293

Amino Acids

32.38

Weight (kDa)

9.35

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 715
AccB1I GGYRCC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 374
AccI GTMKAC 2 cut(s) 395, 527
AciI CCGC 3 cut(s) 297, 372, 418
AclWI GGATC 1 cut(s) 558
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 508
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 3 cut(s) 470, 703, 766
AfiI CCNNNNNNNGG 5 cut(s) 233, 357, 422, 427, 687
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 3 cut(s) 451, 514, 781
AjnI CCWGG 3 cut(s) 406, 420, 581
AluBI AGCT 3 cut(s) 82, 476, 609
AluI AGCT 3 cut(s) 82, 476, 609
Alw26I GTCTC 1 cut(s) 701
AlwI GGATC 1 cut(s) 558
AoxI GGCC 5 cut(s) 313, 319, 359, 363, 413
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 508
AspLEI GCGC 2 cut(s) 126, 329
AspS9I GGNCC 5 cut(s) 359, 364, 414, 676, 826
AsuHPI GGTGA 1 cut(s) 331
AvaII GGWCC 2 cut(s) 676, 826
AxyI CCTNAGG 1 cut(s) 831
BanI GGYRCC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 119, 749
BceAI ACGGC 2 cut(s) 239, 306
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 3 cut(s) 408, 422, 583
BciVI GTATCC 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 701
BfaI CTAG 2 cut(s) 444, 645
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 2 cut(s) 127, 330
BfrI CTTAAG 1 cut(s) 851
BfuI GTATCC 1 cut(s) 619
BglI GCCNNNNNGGC 1 cut(s) 412
BisI GCNGC 2 cut(s) 238, 372
BlsI GCNGC 2 cut(s) 239, 373
BmcAI AGTACT 1 cut(s) 766
Bme1390I CCNGG 3 cut(s) 408, 422, 583
Bme18I GGWCC 2 cut(s) 676, 826
BmgT120I GGNCC 5 cut(s) 359, 364, 414, 676, 826
BmiI GGNNCC 4 cut(s) 328, 416, 678, 828
BmrFI CCNGG 3 cut(s) 408, 422, 583
BmsI GCATC 3 cut(s) 201, 249, 865
BpuEI CTTGAG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 5 cut(s) 187, 316, 322, 407, 421
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 357, 422, 427, 687
Bse118I RCCGGY 2 cut(s) 361, 616
Bse1I ACTGG 2 cut(s) 703, 870
Bse21I CCTNAGG 1 cut(s) 831
BseBI CCWGG 3 cut(s) 408, 422, 583
BseDI CCNNGG 5 cut(s) 187, 316, 322, 407, 421
BseGI GGATG 4 cut(s) 105, 222, 577, 760
BseLI CCNNNNNNNGG 5 cut(s) 233, 357, 422, 427, 687
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 703, 870
BseRI GAGGAG 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 641
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 5 cut(s) 315, 321, 361, 365, 415
BshNI GGYRCC 1 cut(s) 326
BsiEI CGRYCG 1 cut(s) 322
BsiSI CCGG 3 cut(s) 333, 362, 617
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 5 cut(s) 233, 357, 422, 427, 687
BsmAI GTCTC 1 cut(s) 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 5 cut(s) 315, 321, 361, 365, 415
Bsp143I GATC 3 cut(s) 388, 550, 847
BspACI CCGC 3 cut(s) 297, 372, 418
BspANI GGCC 5 cut(s) 315, 321, 361, 365, 415
BspCNI CTCAG 1 cut(s) 590
BspLI GGNNCC 4 cut(s) 328, 416, 678, 828
BspMAI CTGCAG 1 cut(s) 748
BspPI GGATC 1 cut(s) 558
BspT107I GGYRCC 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 851
BsrBI CCGCTC 1 cut(s) 374
BsrFI RCCGGY 2 cut(s) 361, 616
BsrI ACTGG 2 cut(s) 703, 870
BssAI RCCGGY 2 cut(s) 361, 616
BssECI CCNNGG 5 cut(s) 187, 316, 322, 407, 421
BssMI GATC 3 cut(s) 388, 550, 847
BssNAI GTATAC 1 cut(s) 528
BssNI GRCGYC 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 528
Bst2UI CCWGG 3 cut(s) 408, 422, 583
Bst4CI ACNGT 3 cut(s) 525, 532, 769
Bst6I CTCTTC 3 cut(s) 134, 509, 587
BstACI GRCGYC 1 cut(s) 327
BstAFI CTTAAG 1 cut(s) 851
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 577, 831
BstDSI CCRYGG 1 cut(s) 322
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 4 cut(s) 105, 222, 577, 760
BstH2I RGCGCY 2 cut(s) 127, 330
BstHHI GCGC 2 cut(s) 126, 329
BstKTI GATC 3 cut(s) 391, 553, 850
BstMAI GTCTC 1 cut(s) 701
BstMBI GATC 3 cut(s) 388, 550, 847
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 3 cut(s) 371, 412, 718
BstNI CCWGG 3 cut(s) 408, 422, 583
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 3 cut(s) 406, 420, 581
BstSFI CTRYAG 1 cut(s) 744
BstV1I GCAGC 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 528
BstZI CGGCCG 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 831
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 5 cut(s) 315, 321, 361, 365, 415
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 4 cut(s) 105, 222, 577, 760
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 3 cut(s) 753, 843, 877
Cac8I GCNNGC 1 cut(s) 363
CfoI GCGC 2 cut(s) 126, 329
Cfr10I RCCGGY 2 cut(s) 361, 616
Cfr13I GGNCC 5 cut(s) 359, 364, 414, 676, 826
CseI GACGC 1 cut(s) 718
Csp6I GTAC 3 cut(s) 469, 702, 765
CviAII CATG 1 cut(s) 662
CviQI GTAC 3 cut(s) 469, 702, 765
DdeI CTNAG 2 cut(s) 577, 831
DinI GGCGCC 1 cut(s) 328
DpnI GATC 3 cut(s) 390, 552, 849
DpnII GATC 3 cut(s) 388, 550, 847
DrdI GACNNNNNNGTC 1 cut(s) 715
DseDI GACNNNNNNGTC 1 cut(s) 715
EaeI YGGCCR 1 cut(s) 319
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 3 cut(s) 134, 509, 587
EarI CTCTTC 3 cut(s) 134, 509, 587
EclXI CGGCCG 1 cut(s) 319
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 676, 826
Eco52I CGGCCG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 831
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 414
EcoRII CCWGG 3 cut(s) 406, 420, 581
EcoRV GATATC 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 880
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 1 cut(s) 665
FaiI YATR 6 cut(s) 306, 528, 557, 663, 860, 880
FaqI GGGAC 1 cut(s) 242
FatI CATG 1 cut(s) 661
FauI CCCGC 2 cut(s) 304, 425
FblI GTMKAC 2 cut(s) 395, 527
Fnu4HI GCNGC 2 cut(s) 238, 372
FokI GGATG 4 cut(s) 92, 209, 584, 767
FseI GGCCGGCC 1 cut(s) 365
Fsp4HI GCNGC 2 cut(s) 238, 372
FspBI CTAG 2 cut(s) 444, 645
GlaI GCGC 2 cut(s) 125, 328
GluI GCNGC 2 cut(s) 238, 372
HaeII RGCGCY 2 cut(s) 127, 330
HaeIII GGCC 5 cut(s) 315, 321, 361, 365, 415
HapII CCGG 3 cut(s) 333, 362, 617
HgaI GACGC 1 cut(s) 718
HhaI GCGC 2 cut(s) 126, 329
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 1 cut(s) 665
Hin6I GCGC 2 cut(s) 124, 327
HinP1I GCGC 2 cut(s) 124, 327
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 5 cut(s) 43, 167, 336, 575, 800
HpaII CCGG 3 cut(s) 333, 362, 617
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 3 cut(s) 396, 528, 826
Hpy188I TCNGA 5 cut(s) 21, 184, 486, 562, 799
Hpy188III TCNNGA 2 cut(s) 377, 637
Hpy8I GTNNAC 3 cut(s) 396, 528, 826
Hpy99I CGWCG 2 cut(s) 314, 400
HpyAV CCTTC 1 cut(s) 634
HpyCH4III ACNGT 3 cut(s) 525, 532, 769
HpyCH4V TGCA 5 cut(s) 240, 622, 671, 746, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 412, 718
HpyF3I CTNAG 2 cut(s) 577, 831
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 1 cut(s) 665
HspAI GCGC 2 cut(s) 124, 327
KasI GGCGCC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 3 cut(s) 388, 550, 847
LmnI GCTCC 3 cut(s) 87, 379, 658
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 3 cut(s) 201, 249, 865
MaeI CTAG 2 cut(s) 444, 645
MaeIII GTNAC 1 cut(s) 664
MalI GATC 3 cut(s) 390, 552, 849
MbiI CCGCTC 1 cut(s) 374
MboI GATC 3 cut(s) 388, 550, 847
MboII GAAGA 4 cut(s) 121, 526, 604, 874
MluCI AATT 3 cut(s) 301, 508, 729
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 2 cut(s) 161, 569
Mph1103I ATGCAT 1 cut(s) 880
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 1 cut(s) 852
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 3 cut(s) 333, 362, 617
MspR9I CCNGG 3 cut(s) 408, 422, 583
MvaI CCWGG 3 cut(s) 408, 422, 583
MwoI GCNNNNNNNGC 3 cut(s) 371, 412, 718
NaeI GCCGGC 1 cut(s) 363
NarI GGCGCC 1 cut(s) 327
NdeII GATC 3 cut(s) 388, 550, 847
NgoMIV GCCGGC 1 cut(s) 361
NlaIII CATG 1 cut(s) 665
NlaIV GGNNCC 4 cut(s) 328, 416, 678, 828
NmeAIII GCCGAG 2 cut(s) 168, 297
NsiI ATGCAT 1 cut(s) 880
NspI RCATGY 1 cut(s) 665
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 43, 336, 800
PkrI GCNGC 2 cut(s) 239, 373
PleI GAGTC 2 cut(s) 161, 569
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 2 cut(s) 161, 569
Psp6I CCWGG 3 cut(s) 406, 420, 581
PspGI CCWGG 3 cut(s) 406, 420, 581
PspN4I GGNNCC 4 cut(s) 328, 416, 678, 828
PspPI GGNCC 5 cut(s) 359, 364, 414, 676, 826
PstI CTGCAG 1 cut(s) 748
RigI GGCCGGCC 1 cut(s) 365
RsaI GTAC 3 cut(s) 470, 703, 766
RsaNI GTAC 3 cut(s) 469, 702, 765
SalI GTCGAC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 852
SatI GCNGC 2 cut(s) 238, 372
Sau3AI GATC 3 cut(s) 388, 550, 847
Sau96I GGNCC 5 cut(s) 359, 364, 414, 676, 826
ScaI AGTACT 1 cut(s) 766
SchI GAGTC 2 cut(s) 161, 569
ScrFI CCNGG 3 cut(s) 408, 422, 583
SetI ASST 6 cut(s) 42, 84, 189, 449, 478, 611
SfaNI GCATC 3 cut(s) 201, 249, 865
SfcI CTRYAG 1 cut(s) 744
SfoI GGCGCC 1 cut(s) 328
SinI GGWCC 2 cut(s) 676, 826
SmlI CTYRAG 2 cut(s) 77, 851
SmoI CTYRAG 2 cut(s) 77, 851
Sse9I AATT 3 cut(s) 301, 508, 729
SsiI CCGC 3 cut(s) 297, 372, 418
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 2 cut(s) 444, 645
StyD4I CCNGG 3 cut(s) 406, 420, 581
TaaI ACNGT 3 cut(s) 525, 532, 769
TaqI TCGA 3 cut(s) 273, 395, 636
TasI AATT 3 cut(s) 301, 508, 729
TatI WGTACW 2 cut(s) 468, 764
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 3 cut(s) 43, 336, 800
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TscAI CASTG 3 cut(s) 753, 850, 877
TseI GCWGC 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 121, 875
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 3 cut(s) 753, 850, 877
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 2 cut(s) 676, 826
XagI CCTNNNNNAGG 1 cut(s) 425
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XmiI GTMKAC 2 cut(s) 395, 527
XspI CTAG 2 cut(s) 444, 645
ZrmI AGTACT 1 cut(s) 766
Zsp2I ATGCAT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.