Rh6AG201900

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000856
Physical Location & Seq
Reverse (-)
36172203 .. 36172700
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG201900.1

Sequence Viewer

Length: 498 bp
ATGGTGTTCATCACATCTCCGAACCACAGAACCCTAAACCTGAATCTCAACCCAAAAACTACCACCCTCCAAACCCTCAAGCTCCAAATCCAGCAAACTTCCCACATCCCCATCTCCCACCAGCGCCTCTTCATCTCCCAAAGCCTCCAAATCCTAACCCAAACTGACTCCACCCTCCTCTTCGACCTCGGCATCTCCCCCCTCTCTACCCTAACCCTCCACATCCCCTTATTCAGCCTCACCAAACCCCTTGCCGTCCCCAAACCCCGCCTCGACTTCCTCAACTCCAAGCCTCCCTCCAATTATGTCGTCGGCCTAGGCCGTGGCGCCACCGGATTCACCACGCAGATCGATATCGAGCCGGCCCGTGCCTCTCCCGACTTGCCCGATCTGTCGGCGGGGCTGCCGGGGCGGCCCAGCCTGGGGTGGGCTGCAGGCGCAGGAAGCAAGAGGAAGACGACGGCAAGGAGAATGGTTACGATGAGAATAAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

165

Amino Acids

18.04

Weight (kDa)

11.42

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 98 - 128 2.1e-09 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 3 cut(s) 268, 398, 412
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 3 cut(s) 422, 423, 427
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AoxI GGCC 4 cut(s) 313, 319, 363, 413
ApeKI GCWGC 2 cut(s) 403, 431
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 3 cut(s) 126, 329, 440
AspS9I GGNCC 2 cut(s) 364, 414
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 232, 331
AvrII CCTAGG 1 cut(s) 316
BanI GGYRCC 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 390, 418
BccI CCATC 1 cut(s) 119
BceAI ACGGC 3 cut(s) 239, 306, 477
BciT130I CCWGG 1 cut(s) 422
BcnI CCSGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 2 cut(s) 127, 330
BglI GCCNNNNNGGC 1 cut(s) 412
BisI GCNGC 3 cut(s) 404, 413, 432
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 3 cut(s) 405, 414, 433
Bme1390I CCNGG 2 cut(s) 408, 422
BmgT120I GGNCC 2 cut(s) 364, 414
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 2 cut(s) 408, 422
BmsI GCATC 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 461
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 5 cut(s) 187, 316, 322, 407, 421
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 423, 427
Bse118I RCCGGY 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 1 cut(s) 422
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 5 cut(s) 187, 316, 322, 407, 421
BseGI GGATG 2 cut(s) 105, 222
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 3 cut(s) 422, 423, 427
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 390, 418
BseYI CCCAGC 1 cut(s) 416
BshFI GGCC 4 cut(s) 315, 321, 365, 415
BshNI GGYRCC 1 cut(s) 326
BshVI ATCGAT 1 cut(s) 351
BsiSI CCGG 3 cut(s) 333, 362, 407
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 422, 423, 427
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 4 cut(s) 315, 321, 365, 415
Bsp143I GATC 2 cut(s) 348, 388
BspACI CCGC 3 cut(s) 268, 398, 412
BspANI GGCC 4 cut(s) 315, 321, 365, 415
BspDI ATCGAT 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 328
BspMAI CTGCAG 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 5 cut(s) 187, 316, 322, 407, 421
BssMI GATC 2 cut(s) 348, 388
BssNI GRCGYC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 422
Bst6I CTCTTC 2 cut(s) 134, 185
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 363, 436
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 105, 222
BstH2I RGCGCY 2 cut(s) 127, 330
BstHHI GCGC 3 cut(s) 126, 329, 440
BstKTI GATC 2 cut(s) 351, 391
BstMBI GATC 2 cut(s) 348, 388
BstMWI GCNNNNNNNGC 4 cut(s) 409, 412, 437, 444
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 406, 420
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 390, 418
BstV2I GAAGAC 1 cut(s) 461
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 4 cut(s) 315, 321, 365, 415
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 2 cut(s) 105, 222
Cac8I GCNNGC 2 cut(s) 363, 436
CfoI GCGC 3 cut(s) 126, 329, 440
Cfr10I RCCGGY 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 364, 414
ClaI ATCGAT 1 cut(s) 351
DinI GGCGCC 1 cut(s) 328
DpnI GATC 2 cut(s) 350, 390
DpnII GATC 2 cut(s) 348, 388
Eam1104I CTCTTC 2 cut(s) 134, 185
EarI CTCTTC 2 cut(s) 134, 185
Eco130I CCWWGG 1 cut(s) 316
Eco32I GATATC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 316
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 316
FaiI YATR 1 cut(s) 306
FaqI GGGAC 1 cut(s) 242
FauI CCCGC 2 cut(s) 275, 391
Fnu4HI GCNGC 3 cut(s) 404, 413, 432
FokI GGATG 2 cut(s) 92, 209
Fsp4HI GCNGC 3 cut(s) 404, 413, 432
FspBI CTAG 1 cut(s) 317
GlaI GCGC 3 cut(s) 125, 328, 439
GluI GCNGC 3 cut(s) 404, 413, 432
GsaI CCCAGC 1 cut(s) 420
HaeII RGCGCY 2 cut(s) 127, 330
HaeIII GGCC 4 cut(s) 315, 321, 365, 415
HapII CCGG 3 cut(s) 333, 362, 407
HhaI GCGC 3 cut(s) 126, 329, 440
Hin1I GRCGYC 1 cut(s) 327
Hin6I GCGC 3 cut(s) 124, 327, 438
HinP1I GCGC 3 cut(s) 124, 327, 438
HinfI GANTC 3 cut(s) 43, 167, 336
HpaII CCGG 3 cut(s) 333, 362, 407
HphI GGTGA 2 cut(s) 232, 331
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 377
Hpy99I CGWCG 2 cut(s) 314, 463
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 4 cut(s) 409, 412, 437, 444
Hsp92I GRCGYC 1 cut(s) 327
HspAI GCGC 3 cut(s) 124, 327, 438
KasI GGCGCC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 348, 388
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 2 cut(s) 390, 418
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 475
MalI GATC 2 cut(s) 350, 390
MboI GATC 2 cut(s) 348, 388
MboII GAAGA 3 cut(s) 121, 172, 466
MluCI AATT 2 cut(s) 301, 493
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 361
MspI CCGG 3 cut(s) 333, 362, 407
MspR9I CCNGG 2 cut(s) 408, 422
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 4 cut(s) 409, 412, 437, 444
NaeI GCCGGC 1 cut(s) 363
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 1 cut(s) 408
NdeII GATC 2 cut(s) 348, 388
NgoMIV GCCGGC 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 328
NmeAIII GCCGAG 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 43, 336
PkrI GCNGC 3 cut(s) 405, 414, 433
PleI GAGTC 1 cut(s) 161
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 2 cut(s) 364, 414
PstI CTGCAG 1 cut(s) 436
SatI GCNGC 3 cut(s) 404, 413, 432
Sau3AI GATC 2 cut(s) 348, 388
Sau96I GGNCC 2 cut(s) 364, 414
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 408, 422
SetI ASST 3 cut(s) 42, 84, 189
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 432
SfoI GGCGCC 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 301, 493
SsiI CCGC 3 cut(s) 268, 398, 412
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 406, 420
StyI CCWWGG 1 cut(s) 316
TaqI TCGA 4 cut(s) 183, 273, 351, 357
TasI AATT 2 cut(s) 301, 493
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 2 cut(s) 43, 336
TseI GCWGC 2 cut(s) 403, 431
TspDTI ATGAA 1 cut(s) 121
XmaJI CCTAGG 1 cut(s) 316
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.