Prupe.3G157000_v2.0.a1

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000856
Physical Location & Seq
Forward (+)
17543738 .. 17547709
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G157000.1

Sequence Viewer

Length: 3081 bp
ATGGTGTTCATCACATCCCCCAACCACAAAACCCTAACCCTAAATCTAAACCCGAAGACCACCACCCTCCAAACCCTAAAGCTCCAAATCGAACAAAAATCCCAAATACCCATCTCAGAGCAGCGCCTATTCATCTCCCAAAGCCTCCAATTACTGACCCAAACCGGCTCCACCCTCCTTTCCGACCTCGGCATCAGACCCCTCTCAACCCTAACCCTCCACATCCCCTTGTTCGGCGGCACCCAACCGCCCAACGTCCCCAAGCCCCGCCTCGAGTTCCTCAACTCCAAGCCTCCCCCAAATTATGTCGCTGGGCTCGGCCGTGGTGCCACTGGGTTCACCACACGATCCGATATCGGGCCCGCCCGGGCCGCCCCCGACCTGCCCGATAGGTCGGCCACGACAATCGGTGGCGCTGCTTCTGCTGCTGCCCCGCCTGGGGTTGGCCGCGGTCGTGGGAAGCCTGAGGAAGAGGAAGAAGATGAAGGAGAGGATAAAGGGTATGATGAGAATCAGAAGTTTGATGAATTCGAAGGGAATGATGTTGGGTTGTTTGCATCGGCTGAGTACGATGATGAGGATAAGGAGGCTGATGCGGTTTGGGAAGCTATTGATACGAGAATGGACTCGAGGAGAAAAGACCGGAGAGAAGCTCGGTTGAAAGAAGAGATTGAGAAATACAGAGCTTCGAACCCAAAGATCACGGAGCAGTTTGCAAATTTGAAGAGAAAGTTGTACACCGTGTCTGCTCAGGAATGGGAGAGCATACCCGAAATTGGAGACTATTCATTGAGGAACAAGAAGAAGAGGTTCGAGAGCTTTGTGCCGGTGCCCGATACGCTTTTAGAGAAGGCGAGACAGGAGAAGGAGCATGTTACGGCTTTGGACCCCAAGAGTAGGGCAGCTAGTGGTACGGAAACGCCATGGTCTCAAACTCCGGTTACAGATTTGACCGCTGTAGGTGAGGGTAGAGGTACTGTGTTGTCATTGAAATTAGATAGGCTTTCTGATTCTGTTTCTGGGCTGACGGTTGTGGACCCAAAAGGGTACCTTACTGATCTTAAGAGTATGAAGATTACTAGTGATGCTGAGATTTCTGATATTAAAAAGGCCAGATTGTTGCTCAAGAGTGTAACACAGACGAATCCGAAGCACCCACCTGGTTGGATTGCGGCTGCAAGGCTAGAGGAGGTGGCTGGGAAGATTCAAGCAGCCAGGCAGTTGATTCAGAAAGGGTGTGAGGAGTGTCCCAAGAGTGAGGATGTGTGGTTAGAGGCGTGTAGGCTTGCTAACCCGGATGAAGCTAAGGCTGTGATTGCCAAGGGAGTCAAGACGATACCCAATTCGGTGAAGTTGTGGATGCAGGCTGCAAAACTAGAGCATGACGATTTGAATAGGAGCAGAGTGTTGAGGAAAGGGTTGGAACACATTCCTGATTCTGTTAGGCTGTGGAAGGCGGTTGTGGAGCTGGCAAATGAGGAAGATGCAAGACTTCTGCTTCACAGGGCCGTGGAGTGTTGTCCCTTGCACATTGAATTGTGGCTTGCACTTGCAAGATTGGAAACTTATGATAATGCTAAGAAGGTCCTCAATAAGGCAAGAGAAAAGCTATCAAAGGAGCCAGCCATTTGGATCACTGCGGCCAAGTTAGAAGAAGCTAACGGGAATACGTCCATGGTTGGGAAGATTATTGAAAGAGGTATAAGGGCCTTGCAAAGGGAAGGATTAGCAATTGATAGAGAAGCGTGGATGAGGGAGGCTGAAGCTGCTGAGCGTGCAGGGTCTGTTGCAACTTGCCAAGCAATCATTCGGAACACAATTGGGATTGGTGTGGAGGAGGAGGATAGAAAGCGCACATGGGTTGCTGATGCAGAGGAATGCAAGAAAAGGGGTTCGATTGAGACAGCCAGAGCTATTTATGCTCACGCACTTACTGTGTTCTTAACCAAGAAGAGCATATGGCTCAAAGCAGCACAACTTGAAAAGAGCCATGGGACTCGGGAATCTCTTGATGCTTTGCTTCGTAAAGCAGTGACATATCGACCACAAGCTGAAGTCTTGTGGCTTATGGGAGCTAAGGAGAAGTGGCTTGCTGGGGATGTGCCTGCTGCCCGTGCCATCCTCCAAGAAGCTTATGCTGCTATACCCAATTCTGAAGAAATTTGGCTTGCTGCATTTAAACTTGAATTTGAGAACCATGAACCTGAGAGAGCTAGAATGCTTCTTGCCAAAGCCCGAGAAAGGGGAGGCACAGAAAAAGTTTGGATGAAATCAGCAATTGTTGAGAGAGAGTTAGGGAACCTTGATGAGGAGAGGAAGTTACTTGACGAGGGATTGAAGCGGTATGCTAGCTTCTTTAAATTGTGGTTGATGCTTGGACAACTAGAGGAACGGCTTGGTCATTTGGAAAAAGCCAAGGAGGCTTATGACTCAGGTCTGAAGCACTGCTCCAATTCTATTCCACTCTGGCTTTCTCGTGCTAATCTGGAAGAGAAGATGGTTGGGCTGAGTAAAGCTCGTGCAGTTCTCACGATGGGCAGGAAGAAGAATCCTCAGAATCCTGAATTGTGGCTTGCTGCTGTTCGAGCTGAATTGAGGCATGGCAATAAGAAGGAAGCTGATATCTTGATGGCAAAGGCTTTGCAGGAGTGTCCCAATAGTGGTATCTTGTGGGCTGCATCTATTGAGATGGTACCCCGTCCCCAACGGAAGACCAAGAGTATGGATGCCCTCAAGAAATGTGATCATGATCCCCATGTCATTGCTGCTGTGGCAAAGTTATTTTGGCATGATAGGAAGGTTGACAAAGCTAGGAATTGGCTAAACAGGGCAGTGACACTTGCTCCAGATATTGGGGATTTCTGGGCTTTATACTACAAATTTGAACTTCAACATGGGACTGAGGAGAACCAAAAGGATGTACTGAAAAGGTGCGAAGCTGCAGAACCAAAGCATGGTGAAAAATGGCAACCTATTTCAAAGGCTGTGGAGAACTCTCACCAATCGTTTGAAGCTATCTTGAAGAAAGTGGTGGTTGCTCTTGGGAAGGAAGAGAGTGCAGCCGAAAATAATAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

1027

Amino Acids

114.94

Weight (kDa)

8.52

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 390
Acc65I GGTACC 2 cut(s) 1047, 2692
AccB1I GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
AccB7I CCANNNNNTGG 2 cut(s) 2852, 2954
AccII CGCG 1 cut(s) 450
AclWI GGATC 3 cut(s) 342, 1640, 2744
AcoI YGGCCR 4 cut(s) 319, 396, 445, 1641
AcsI RAATTY 5 cut(s) 527, 718, 2160, 2186, 2879
AcuI CTGAAG 4 cut(s) 1782, 2073, 2175, 2459
AfaI GTAC 7 cut(s) 569, 737, 913, 976, 1049, 2694, 2922
AflII CTTAAG 1 cut(s) 1061
AhlI ACTAGT 1 cut(s) 1079
AjnI CCWGG 3 cut(s) 436, 1159, 1214
AjuI GAANNNNNNNTTGG 2 cut(s) 1791, 1823
Alw26I GTCTC 4 cut(s) 774, 850, 933, 1895
AlwI GGATC 3 cut(s) 342, 1640, 2744
AlwNI CAGNNNCTG 1 cut(s) 1784
Ama87I CYCGRG 5 cut(s) 272, 366, 628, 1998, 2235
AoxI GGCC 9 cut(s) 319, 359, 369, 396, 445, 1110, 1506, 1641, 1707
ApaI GGGCCC 1 cut(s) 363
ApoI RAATTY 5 cut(s) 527, 718, 2160, 2186, 2879
Asp700I GAANNNNTTC 2 cut(s) 809, 1428
Asp718I GGTACC 2 cut(s) 1047, 2692
AspLEI GCGC 3 cut(s) 126, 416, 1854
AspS9I GGNCC 8 cut(s) 359, 360, 369, 886, 1036, 1506, 1585, 1707
AsuC2I CCSGG 3 cut(s) 367, 368, 1295
AsuHPI GGTGA 5 cut(s) 331, 974, 1360, 2969, 2990
AsuII TTCGAA 2 cut(s) 531, 689
AsuNHI GCTAGC 1 cut(s) 2348
AvaI CYCGRG 5 cut(s) 272, 366, 628, 1998, 2235
AvaII GGWCC 3 cut(s) 886, 1036, 1585
AxyI CCTNAGG 1 cut(s) 465
BaeGI GKGCMC 2 cut(s) 363, 834
BanI GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
BanII GRGCYC 2 cut(s) 318, 363
BarI GAAGNNNNNNTAC 2 cut(s) 2336, 2368
BauI CACGAG 2 cut(s) 2475, 2517
BbsI GAAGAC 2 cut(s) 62, 2717
BccI CCATC 6 cut(s) 119, 2126, 2491, 2527, 2623, 2683
BceAI ACGGC 4 cut(s) 306, 894, 1493, 2408
BciT130I CCWGG 3 cut(s) 438, 1161, 1216
BclI TGATCA 1 cut(s) 2743
BcnI CCSGG 3 cut(s) 367, 368, 1295
BcoDI GTCTC 4 cut(s) 774, 850, 933, 1895
BcuI ACTAGT 1 cut(s) 1079
BfaI CTAG 9 cut(s) 906, 1080, 1184, 1376, 2214, 2349, 2384, 2811, 3079
BfmI CTRYAG 2 cut(s) 957, 2940
BfoI RGCGCY 2 cut(s) 127, 417
BfrI CTTAAG 1 cut(s) 1061
BfuAI ACCTGC 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 2420
BlpI GCTNAGC 1 cut(s) 1770
Bme1390I CCNGG 6 cut(s) 367, 368, 438, 1161, 1216, 1295
Bme18I GGWCC 3 cut(s) 886, 1036, 1585
BmeT110I CYCGRG 5 cut(s) 272, 366, 628, 1998, 2235
BmgT120I GGNCC 8 cut(s) 359, 360, 369, 886, 1036, 1506, 1585, 1707
BmrFI CCNGG 6 cut(s) 367, 368, 438, 1161, 1216, 1295
BmrI ACTGGG 1 cut(s) 342
BmtI GCTAGC 1 cut(s) 2352
BmuI ACTGGG 1 cut(s) 342
BoxI GACNNNNGTC 1 cut(s) 2433
BpiI GAAGAC 2 cut(s) 62, 2717
BplI GAGNNNNNCTC 4 cut(s) 637, 669, 2500, 2532
BpmI CTGGAG 1 cut(s) 2829
Bpu10I CCTNAGC 3 cut(s) 750, 1305, 2076
Bpu1102I GCTNAGC 1 cut(s) 1770
Bpu14I TTCGAA 2 cut(s) 531, 689
BpuEI CTTGAG 2 cut(s) 1109, 2717
BpuMI CCSGG 3 cut(s) 367, 368, 1295
BsaBI GATNNNNATC 2 cut(s) 510, 2748
BsaI GGTCTC 1 cut(s) 933
BsaWI WCCGGW 2 cut(s) 642, 937
BsaXI ACNNNNNCTCC 4 cut(s) 2303, 2333, 2827, 2857
Bse118I RCCGGY 2 cut(s) 164, 826
Bse1I ACTGG 1 cut(s) 337
Bse21I CCTNAGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 2760
Bse8I GATNNNNATC 2 cut(s) 510, 2748
BseBI CCWGG 3 cut(s) 438, 1161, 1216
BseJI GATNNNNATC 2 cut(s) 510, 2748
BseMI GCAATG 1 cut(s) 2760
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 7 cut(s) 646, 1202, 1256, 1850, 1853, 2324, 2918
BseSI GKGCMC 2 cut(s) 363, 834
BseX3I CGGCCG 1 cut(s) 319
BseYI CCCAGC 3 cut(s) 311, 1196, 2093
BsgI GTGCAG 3 cut(s) 1797, 2541, 3078
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 2 cut(s) 322, 454
BshFI GGCC 9 cut(s) 321, 361, 371, 398, 447, 1112, 1508, 1643, 1709
BshNI GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
BsiEI CGRYCG 2 cut(s) 322, 454
BsiHKCI CYCGRG 5 cut(s) 272, 366, 628, 1998, 2235
BsiSI CCGG 6 cut(s) 165, 367, 643, 827, 938, 1295
BslFI GGGAC 7 cut(s) 242, 1233, 1506, 2008, 2637, 2685, 2911
BsmAI GTCTC 4 cut(s) 774, 850, 933, 1895
BsmFI GGGAC 7 cut(s) 242, 1233, 1506, 2008, 2637, 2685, 2911
BsmI GAATGC 2 cut(s) 1883, 2223
BsnI GGCC 9 cut(s) 321, 361, 371, 398, 447, 1112, 1508, 1643, 1709
Bso31I GGTCTC 1 cut(s) 933
BsoBI CYCGRG 5 cut(s) 272, 366, 628, 1998, 2235
Bsp119I TTCGAA 2 cut(s) 531, 689
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 318, 363, 834
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
Bsp1720I GCTNAGC 1 cut(s) 1770
Bsp19I CCATGG 3 cut(s) 923, 1674, 1990
BspANI GGCC 9 cut(s) 321, 361, 371, 398, 447, 1112, 1508, 1643, 1709
BspFNI CGCG 1 cut(s) 450
BspHI TCATGA 1 cut(s) 2746
BspMAI CTGCAG 1 cut(s) 2944
BspMI ACCTGC 1 cut(s) 390
BspOI GCTAGC 1 cut(s) 2352
BspPI GGATC 3 cut(s) 342, 1640, 2744
BspQI GCTCTTC 1 cut(s) 1946
BspT104I TTCGAA 2 cut(s) 531, 689
BspT107I GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
BspTI CTTAAG 1 cut(s) 1061
BspTNI GGTCTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 2760
BsrFI RCCGGY 2 cut(s) 164, 826
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 2 cut(s) 164, 826
BssMI GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
BssSI CACGAG 2 cut(s) 2475, 2517
BssT1I CCWWGG 5 cut(s) 923, 1320, 1674, 1990, 2415
Bst2BI CACGAG 2 cut(s) 2475, 2517
Bst2UI CCWGG 3 cut(s) 438, 1161, 1216
Bst4CI ACNGT 4 cut(s) 742, 979, 1030, 1936
Bst6I CTCTTC 7 cut(s) 465, 660, 719, 800, 1946, 2484, 3045
BstAFI CTTAAG 1 cut(s) 1061
BstAUI TGTACA 1 cut(s) 735
BstBI TTCGAA 2 cut(s) 531, 689
BstDSI CCRYGG 6 cut(s) 322, 448, 923, 1509, 1674, 1990
BstENI CCTNNNNNAGG 3 cut(s) 1592, 1714, 2306
BstFNI CGCG 1 cut(s) 450
BstH2I RGCGCY 2 cut(s) 127, 417
BstHHI GCGC 3 cut(s) 126, 416, 1854
BstKTI GATC 6 cut(s) 350, 702, 1060, 1635, 2746, 2752
BstMAI GTCTC 4 cut(s) 774, 850, 933, 1895
BstMBI GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
BstMCI CGRYCG 2 cut(s) 322, 454
BstNI CCWGG 3 cut(s) 438, 1161, 1216
BstNSI RCATGY 1 cut(s) 875
BstPAI GACNNNNGTC 1 cut(s) 2433
BstSCI CCNGG 6 cut(s) 365, 366, 436, 1159, 1214, 1293
BstSFI CTRYAG 2 cut(s) 957, 2940
BstSLI GKGCMC 2 cut(s) 363, 834
BstUI CGCG 1 cut(s) 450
BstV2I GAAGAC 2 cut(s) 62, 2717
BstXI CCANNNNNNTGG 3 cut(s) 1164, 1629, 2722
BstZI CGGCCG 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 465
BsuRI GGCC 9 cut(s) 321, 361, 371, 398, 447, 1112, 1508, 1643, 1709
BtgI CCRYGG 6 cut(s) 322, 448, 923, 1509, 1674, 1990
BtsI GCAGTG 4 cut(s) 1635, 2037, 2443, 2838
BtsIMutI CAGTG 5 cut(s) 330, 1635, 2037, 2443, 2838
BveI ACCTGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 1784
CciI TCATGA 1 cut(s) 2746
CfoI GCGC 3 cut(s) 126, 416, 1854
Cfr10I RCCGGY 2 cut(s) 164, 826
Cfr13I GGNCC 8 cut(s) 359, 360, 369, 886, 1036, 1506, 1585, 1707
Cfr42I CCGCGG 1 cut(s) 451
Cfr9I CCCGGG 1 cut(s) 366
CsiI ACCWGGT 1 cut(s) 1159
Csp6I GTAC 7 cut(s) 568, 736, 912, 975, 1048, 2693, 2921
CspCI CAANNNNNGTGG 2 cut(s) 2967, 3002
CviQI GTAC 7 cut(s) 568, 736, 912, 975, 1048, 2693, 2921
DpnI GATC 6 cut(s) 349, 701, 1059, 1634, 2745, 2751
DpnII GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
DraI TTTAAA 2 cut(s) 2179, 2359
EaeI YGGCCR 4 cut(s) 319, 396, 445, 1641
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 7 cut(s) 465, 660, 719, 800, 1946, 2484, 3045
EarI CTCTTC 7 cut(s) 465, 660, 719, 800, 1946, 2484, 3045
EclXI CGGCCG 1 cut(s) 319
Eco130I CCWWGG 5 cut(s) 923, 1320, 1674, 1990, 2415
Eco24I GRGCYC 2 cut(s) 318, 363
Eco31I GGTCTC 1 cut(s) 933
Eco32I GATATC 2 cut(s) 355, 2623
Eco47I GGWCC 3 cut(s) 886, 1036, 1585
Eco52I CGGCCG 1 cut(s) 319
Eco57I CTGAAG 4 cut(s) 1782, 2073, 2175, 2459
Eco81I CCTNAGG 1 cut(s) 465
Eco88I CYCGRG 5 cut(s) 272, 366, 628, 1998, 2235
EcoNI CCTNNNNNAGG 3 cut(s) 1592, 1714, 2306
EcoO109I RGGNCCY 2 cut(s) 1585, 1707
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 436, 1159, 1214
EcoRV GATATC 2 cut(s) 355, 2623
EcoT14I CCWWGG 5 cut(s) 923, 1320, 1674, 1990, 2415
EcoT38I GRGCYC 2 cut(s) 318, 363
ErhI CCWWGG 5 cut(s) 923, 1320, 1674, 1990, 2415
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 7 cut(s) 242, 1233, 1506, 2008, 2637, 2685, 2911
FauI CCCGC 3 cut(s) 275, 370, 441
FauNDI CATATG 1 cut(s) 1958
FbaI TGATCA 1 cut(s) 2743
FriOI GRGCYC 2 cut(s) 318, 363
FspBI CTAG 9 cut(s) 906, 1080, 1184, 1376, 2214, 2349, 2384, 2811, 3079
GlaI GCGC 3 cut(s) 125, 415, 1853
GsaI CCCAGC 3 cut(s) 315, 1200, 2097
GsuI CTGGAG 1 cut(s) 2829
HaeII RGCGCY 2 cut(s) 127, 417
HaeIII GGCC 9 cut(s) 321, 361, 371, 398, 447, 1112, 1508, 1643, 1709
HapII CCGG 6 cut(s) 165, 367, 643, 827, 938, 1295
HhaI GCGC 3 cut(s) 126, 416, 1854
Hin6I GCGC 3 cut(s) 124, 414, 1852
HinP1I GCGC 3 cut(s) 124, 414, 1852
HincII GTYRAC 1 cut(s) 2803
HindII GTYRAC 1 cut(s) 2803
HindIII AAGCTT 1 cut(s) 2130
HpaII CCGG 6 cut(s) 165, 367, 643, 827, 938, 1295
HphI GGTGA 5 cut(s) 331, 974, 1360, 2969, 2990
Hpy166II GTNNAC 4 cut(s) 339, 738, 1036, 2803
Hpy8I GTNNAC 4 cut(s) 339, 738, 1036, 2803
HpyCH4III ACNGT 4 cut(s) 742, 979, 1030, 1936
HpyCH4IV ACGT 2 cut(s) 255, 1670
HpySE526I ACGT 2 cut(s) 255, 1670
HspAI GCGC 3 cut(s) 124, 414, 1852
KpnI GGTACC 2 cut(s) 1051, 2696
Ksp22I TGATCA 1 cut(s) 2743
KspI CCGCGG 1 cut(s) 451
Kzo9I GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
LguI GCTCTTC 1 cut(s) 1946
MabI ACCWGGT 1 cut(s) 1159
MaeI CTAG 9 cut(s) 906, 1080, 1184, 1376, 2214, 2349, 2384, 2811, 3079
MaeII ACGT 2 cut(s) 255, 1670
MaeIII GTNAC 6 cut(s) 874, 940, 1132, 2032, 2319, 2833
MalI GATC 6 cut(s) 349, 701, 1059, 1634, 2745, 2751
MboI GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
MfeI CAATTG 3 cut(s) 1731, 1818, 2277
MhlI GDGCHC 3 cut(s) 318, 363, 834
MlyI GAGTC 4 cut(s) 620, 1335, 1990, 2423
MmeI TCCRAC 3 cut(s) 207, 1145, 1401
MroXI GAANNNNTTC 2 cut(s) 809, 1428
MseI TTAA 5 cut(s) 1062, 1104, 1943, 2178, 2358
MspA1I CMGCKG 2 cut(s) 450, 956
MspCI CTTAAG 1 cut(s) 1061
MspI CCGG 6 cut(s) 165, 367, 643, 827, 938, 1295
MspR9I CCNGG 6 cut(s) 367, 368, 438, 1161, 1216, 1295
MunI CAATTG 3 cut(s) 1731, 1818, 2277
Mva1269I GAATGC 2 cut(s) 1883, 2223
MvaI CCWGG 3 cut(s) 438, 1161, 1216
MvnI CGCG 1 cut(s) 450
NciI CCSGG 3 cut(s) 367, 368, 1295
NcoI CCATGG 3 cut(s) 923, 1674, 1990
NdeI CATATG 1 cut(s) 1958
NdeII GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
NheI GCTAGC 1 cut(s) 2348
NmeAIII GCCGAG 2 cut(s) 168, 297
NmuCI GTSAC 2 cut(s) 2032, 2833
NspI RCATGY 1 cut(s) 875
NspV TTCGAA 2 cut(s) 531, 689
PaeR7I CTCGAG 2 cut(s) 272, 628
PagI TCATGA 1 cut(s) 2746
PciSI GCTCTTC 1 cut(s) 1946
PctI GAATGC 2 cut(s) 1883, 2223
PdmI GAANNNNTTC 2 cut(s) 809, 1428
PfeI GAWTC 9 cut(s) 511, 1010, 1144, 1204, 1225, 1436, 2003, 2548, 2557
PflMI CCANNNNNTGG 2 cut(s) 2852, 2954
PleI GAGTC 4 cut(s) 620, 1334, 1990, 2423
PpsI GAGTC 4 cut(s) 620, 1334, 1990, 2423
PpuMI RGGWCCY 1 cut(s) 1585
PshAI GACNNNNGTC 1 cut(s) 2433
Psp5II RGGWCCY 1 cut(s) 1585
Psp6I CCWGG 3 cut(s) 436, 1159, 1214
PspFI CCCAGC 3 cut(s) 311, 1196, 2093
PspGI CCWGG 3 cut(s) 436, 1159, 1214
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 8 cut(s) 359, 360, 369, 886, 1036, 1506, 1585, 1707
PspPPI RGGWCCY 1 cut(s) 1585
PspXI VCTCGAGB 2 cut(s) 272, 628
PstI CTGCAG 1 cut(s) 2944
PstNI CAGNNNCTG 1 cut(s) 1784
RsaI GTAC 7 cut(s) 569, 737, 913, 976, 1049, 2694, 2922
RsaNI GTAC 7 cut(s) 568, 736, 912, 975, 1048, 2693, 2921
SacII CCGCGG 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 1946
SaqAI TTAA 5 cut(s) 1062, 1104, 1943, 2178, 2358
Sau3AI GATC 6 cut(s) 347, 699, 1057, 1632, 2743, 2749
Sau96I GGNCC 8 cut(s) 359, 360, 369, 886, 1036, 1506, 1585, 1707
SchI GAGTC 4 cut(s) 620, 1335, 1990, 2423
ScrFI CCNGG 6 cut(s) 367, 368, 438, 1161, 1216, 1295
SduI GDGCHC 3 cut(s) 318, 363, 834
SexAI ACCWGGT 1 cut(s) 1159
SfcI CTRYAG 2 cut(s) 957, 2940
Sfr274I CTCGAG 2 cut(s) 272, 628
Sfr303I CCGCGG 1 cut(s) 451
SfuI TTCGAA 2 cut(s) 531, 689
SgrBI CCGCGG 1 cut(s) 451
SinI GGWCC 3 cut(s) 886, 1036, 1585
SlaI CTCGAG 2 cut(s) 272, 628
SmaI CCCGGG 1 cut(s) 368
SmlI CTYRAG 5 cut(s) 272, 628, 1061, 1124, 2732
SmoI CTYRAG 5 cut(s) 272, 628, 1061, 1124, 2732
SpeI ACTAGT 1 cut(s) 1079
SrfI GCCCGGGC 1 cut(s) 368
SspMI CTAG 9 cut(s) 906, 1080, 1184, 1376, 2214, 2349, 2384, 2811, 3079
StyD4I CCNGG 6 cut(s) 365, 366, 436, 1159, 1214, 1293
StyI CCWWGG 5 cut(s) 923, 1320, 1674, 1990, 2415
TaaI ACNGT 4 cut(s) 742, 979, 1030, 1936
TaiI ACGT 2 cut(s) 258, 1673
TaqI TCGA 9 cut(s) 90, 273, 531, 629, 689, 813, 1895, 2041, 2584
TatI WGTACW 2 cut(s) 735, 2920
TauI GCSGC 5 cut(s) 240, 374, 450, 1175, 1643
TfiI GAWTC 9 cut(s) 511, 1010, 1144, 1204, 1225, 1436, 2003, 2548, 2557
Tru1I TTAA 5 cut(s) 1062, 1104, 1943, 2178, 2358
Tru9I TTAA 5 cut(s) 1062, 1104, 1943, 2178, 2358
TscAI CASTG 5 cut(s) 337, 1642, 2037, 2450, 2838
TseFI GTSAC 2 cut(s) 2032, 2833
Tsp45I GTSAC 2 cut(s) 2032, 2833
TspDTI ATGAA 8 cut(s) 121, 498, 540, 777, 1085, 1314, 2214, 2282
TspGWI ACGGA 3 cut(s) 719, 929, 2722
TspMI CCCGGG 1 cut(s) 366
TspRI CASTG 5 cut(s) 337, 1642, 2037, 2450, 2838
Van91I CCANNNNNTGG 2 cut(s) 2852, 2954
Vha464I CTTAAG 1 cut(s) 1061
VpaK11BI GGWCC 3 cut(s) 886, 1036, 1585
XagI CCTNNNNNAGG 3 cut(s) 1592, 1714, 2306
XapI RAATTY 5 cut(s) 527, 718, 2160, 2186, 2879
XceI RCATGY 1 cut(s) 875
XhoI CTCGAG 2 cut(s) 272, 628
XmaI CCCGGG 1 cut(s) 366
XmnI GAANNNNTTC 2 cut(s) 809, 1428
XspI CTAG 9 cut(s) 906, 1080, 1184, 1376, 2214, 2349, 2384, 2811, 3079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.