Prupe.3G207300_v2.0.a1

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000856
Physical Location & Seq
Forward (+)
21395237 .. 21396416
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G207300.1

Sequence Viewer

Length: 1167 bp
ATGGAGGAGTTAAAAAGGGAGGTAAAAAGGGATGCGATAAAGAAGGATAGACGGTTGTTGAAGAGTTTCAGGGAGAGGTACCCTAAGCGGCCATTTTGTTGGATTGCATCTGCGAGGTTGGAGGAGCAGGCTGAGGAAATGGAGGCAGCGTGGCAATTGATTCAGAAAGGATGTGAGGAGTGCCCTAATAGCGAGGATGTGTGGTTGGAGGCGTGTAGGATTGCGATTGCGGCTGCGAGGAGCAGCCCCAATCCCAATGAAGCAGGTAAGGCTGTGATTGCCCATGGATTGAAGTTGATACCCAATTCGGTGAAGTTGTGGTTGGAGGCTGCAAATTTGGAGCATGATAACTCGAATAAGAGCAGGGGTTGGAACACATTCCTGATTCCGTTCTGCTGTGGAAGGCGGTGGTTGAGCTCGCCACTGCGGCGAAATCGAATGAGGAGGACAATGCAAATGCAAGGGAGAAAAGCCAAGGAAGCTTATGACTTGGGCCTGACGCACTGCCCTAATTCTATACAGCTCTGGCTTTCTCTTGTTAATCTTGAACAGAATTTGAATGGGCTGACTAGTGCTCGTGCAGTCCTCACACTAGCCAGGAACAAAAATCCTCACAACCCTCAACTGTGGCTTGCTGCAACTCGAACTGAATTGAGGCATGGTAATAACAAGGAAGCTGATATTTTGATGGCGAAGGCTTTGCACGAGTGTCCCAATAGTGGTATCTTGTGGGCAGCATATATTGAGAGTATGATACTCCTACCCCCTTCTCAATGGATGGCCAAGATTATGGATGCCCTCATGAAATGTGATTACGATCCCCATGTCATTGCTGCTGTGGCCAAGTTATTCTGGCATCACTGTAAGGTTGAGAGAGCTAGGACTTGGCTCGACAGGGCCGTCACAATTGCCCCAGATATTGGGGATTTCTGGGCTTTATACTTCCAATTTGAACTTCAGCATGGGACTGATGAGAACCAGAAGGATGTTTTGAGAAGATGCATTGCTTCACAACCAAAGCATGGTGAAAAATGGCAACCTATTTTCAAGGCCCTGCACAACTCTCACCAACCGACTGAAGCTATTTTGCATCAAGTGGTGGCTGTACTCGCCAAGGAAGAGAGCTCGCAGCAGGCAAGGCAGGCGCCCCAAACTGATAGACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048522 GO:0050681 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_8

Protein Analysis

389

Amino Acids

44.62

Weight (kDa)

9.14

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 899
Acc36I ACCTGC 1 cut(s) 254
Acc65I GGTACC 1 cut(s) 78
AccB1I GGYRCC 2 cut(s) 78, 1144
AccB7I CCANNNNNTGG 2 cut(s) 920, 1022
AciI CCGC 4 cut(s) 88, 230, 406, 427
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 3 cut(s) 89, 780, 840
AcsI RAATTY 2 cut(s) 334, 553
AcuI CTGAAG 2 cut(s) 941, 1098
AcyI GRCGYC 1 cut(s) 1145
AfaI GTAC 2 cut(s) 80, 1107
AfiI CCNNNNNNNGG 3 cut(s) 719, 920, 1022
AgsI TTSAA 6 cut(s) 61, 292, 548, 559, 953, 1048
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 596
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 939, 971
AluBI AGCT 7 cut(s) 417, 482, 523, 677, 878, 1082, 1125
AluI AGCT 7 cut(s) 417, 482, 523, 677, 878, 1082, 1125
Alw21I GWGCWC 3 cut(s) 419, 577, 1127
AlwI GGATC 1 cut(s) 812
AoxI GGCC 6 cut(s) 89, 493, 780, 840, 897, 1050
ApeKI GCWGC 8 cut(s) 146, 233, 243, 329, 635, 734, 833, 1129
ApoI RAATTY 2 cut(s) 334, 553
Asp700I GAANNNNTTC 2 cut(s) 65, 377
Asp718I GGTACC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 1147
AspS9I GGNCC 3 cut(s) 493, 897, 1051
AsuHPI GGTGA 3 cut(s) 322, 1037, 1058
BaeGI GKGCMC 1 cut(s) 185
BalI TGGCCA 2 cut(s) 782, 842
BanI GGYRCC 2 cut(s) 78, 1144
BanII GRGCYC 2 cut(s) 419, 1127
BauI CACGAG 2 cut(s) 576, 704
Bbv12I GWGCWC 3 cut(s) 419, 577, 1127
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 8 cut(s) 158, 220, 255, 316, 622, 746, 820, 1141
BccI CCATC 2 cut(s) 682, 772
BceAI ACGGC 1 cut(s) 884
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 1 cut(s) 598
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 4 cut(s) 570, 593, 879, 1165
BfoI RGCGCY 1 cut(s) 1148
BfuAI ACCTGC 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 598
BmgT120I GGNCC 3 cut(s) 493, 897, 1051
BmiI GGNNCC 2 cut(s) 80, 1146
BmrFI CCNGG 1 cut(s) 598
BmsI GCATC 6 cut(s) 22, 116, 784, 865, 989, 1099
Bpu10I CCTNAGC 2 cut(s) 84, 132
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 1145
BsaJI CCNNGG 3 cut(s) 283, 474, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 719, 920, 1022
Bse3DI GCAATG 2 cut(s) 828, 1002
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 1 cut(s) 598
BseDI CCNNGG 3 cut(s) 283, 474, 1113
BseGI GGATG 6 cut(s) 37, 176, 202, 783, 799, 991
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 719, 920, 1022
BseMI GCAATG 2 cut(s) 828, 1002
BseMII CTCAG 1 cut(s) 123
BseRI GAGGAG 5 cut(s) 20, 137, 191, 253, 457
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 8 cut(s) 158, 220, 255, 316, 622, 746, 820, 1141
BsgI GTGCAG 2 cut(s) 600, 1040
BshFI GGCC 6 cut(s) 91, 495, 782, 842, 899, 1052
BshNI GGYRCC 2 cut(s) 78, 1144
BsiHKAI GWGCWC 3 cut(s) 419, 577, 1127
BslFI GGGAC 2 cut(s) 696, 979
BslI CCNNNNNNNGG 3 cut(s) 719, 920, 1022
BsmFI GGGAC 2 cut(s) 696, 979
BsnI GGCC 6 cut(s) 91, 495, 782, 842, 899, 1052
Bsp1286I GDGCHC 4 cut(s) 185, 419, 577, 1127
Bsp143I GATC 1 cut(s) 817
Bsp19I CCATGG 1 cut(s) 283
BspACI CCGC 4 cut(s) 88, 230, 406, 427
BspANI GGCC 6 cut(s) 91, 495, 782, 842, 899, 1052
BspCNI CTCAG 1 cut(s) 124
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 80, 1146
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 1 cut(s) 812
BspT107I GGYRCC 2 cut(s) 78, 1144
BsrDI GCAATG 2 cut(s) 828, 1002
BssECI CCNNGG 3 cut(s) 283, 474, 1113
BssMI GATC 1 cut(s) 817
BssNI GRCGYC 1 cut(s) 1145
BssSI CACGAG 2 cut(s) 576, 704
BssT1I CCWWGG 3 cut(s) 283, 474, 1113
Bst2BI CACGAG 2 cut(s) 576, 704
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 3 cut(s) 54, 627, 863
Bst6I CTCTTC 2 cut(s) 56, 1113
BstACI GRCGYC 1 cut(s) 1145
BstC8I GCNNGC 6 cut(s) 129, 419, 633, 1127, 1134, 1143
BstDEI CTNAG 2 cut(s) 84, 132
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 6 cut(s) 37, 176, 202, 783, 799, 991
BstH2I RGCGCY 1 cut(s) 1148
BstHHI GCGC 1 cut(s) 1147
BstKTI GATC 1 cut(s) 820
BstMBI GATC 1 cut(s) 817
BstNI CCWGG 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 596
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 8 cut(s) 158, 220, 255, 316, 622, 746, 820, 1141
BstXI CCANNNNNNTGG 2 cut(s) 99, 790
BsuRI GGCC 6 cut(s) 91, 495, 782, 842, 899, 1052
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 6 cut(s) 37, 176, 202, 783, 799, 991
BtsI GCAGTG 2 cut(s) 422, 502
BtsIMutI CAGTG 3 cut(s) 422, 502, 859
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 6 cut(s) 129, 419, 633, 1127, 1134, 1143
CciI TCATGA 1 cut(s) 801
CfoI GCGC 1 cut(s) 1147
Cfr13I GGNCC 3 cut(s) 493, 897, 1051
CseI GACGC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 79, 1106
CviAII CATG 7 cut(s) 284, 344, 659, 802, 824, 962, 1022
CviQI GTAC 2 cut(s) 79, 1106
DdeI CTNAG 2 cut(s) 84, 132
DinI GGCGCC 1 cut(s) 1146
DpnI GATC 1 cut(s) 819
DpnII GATC 1 cut(s) 817
DrdI GACNNNNNNGTC 1 cut(s) 899
DseDI GACNNNNNNGTC 1 cut(s) 899
EaeI YGGCCR 3 cut(s) 89, 780, 840
Eam1104I CTCTTC 2 cut(s) 56, 1113
EarI CTCTTC 2 cut(s) 56, 1113
Ecl136II GAGCTC 2 cut(s) 417, 1125
Eco130I CCWWGG 3 cut(s) 283, 474, 1113
Eco24I GRGCYC 2 cut(s) 419, 1127
Eco53kI GAGCTC 2 cut(s) 417, 1125
Eco57I CTGAAG 2 cut(s) 941, 1098
EcoICRI GAGCTC 2 cut(s) 417, 1125
EcoO109I RGGNCCY 1 cut(s) 1051
EcoRII CCWGG 1 cut(s) 596
EcoT14I CCWWGG 3 cut(s) 283, 474, 1113
EcoT22I ATGCAT 1 cut(s) 1004
EcoT38I GRGCYC 2 cut(s) 419, 1127
EgeI GGCGCC 1 cut(s) 1146
EheI GGCGCC 1 cut(s) 1146
ErhI CCWWGG 3 cut(s) 283, 474, 1113
FaeI CATG 7 cut(s) 287, 347, 662, 805, 827, 965, 1025
FaqI GGGAC 2 cut(s) 696, 979
FatI CATG 7 cut(s) 283, 343, 658, 801, 823, 961, 1021
FokI GGATG 6 cut(s) 44, 183, 209, 790, 806, 998
FriOI GRGCYC 2 cut(s) 419, 1127
FspBI CTAG 4 cut(s) 570, 593, 879, 1165
GlaI GCGC 1 cut(s) 1146
HaeII RGCGCY 1 cut(s) 1148
HaeIII GGCC 6 cut(s) 91, 495, 782, 842, 899, 1052
HgaI GACGC 1 cut(s) 508
HhaI GCGC 1 cut(s) 1147
Hin1I GRCGYC 1 cut(s) 1145
Hin1II CATG 7 cut(s) 287, 347, 662, 805, 827, 965, 1025
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 3 cut(s) 160, 385, 1161
HphI GGTGA 3 cut(s) 322, 1037, 1058
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 382, 545, 802
HpyAV CCTTC 5 cut(s) 37, 396, 688, 777, 976
HpyCH4III ACNGT 3 cut(s) 54, 627, 863
HpyF3I CTNAG 2 cut(s) 84, 132
Hsp92I GRCGYC 1 cut(s) 1145
Hsp92II CATG 7 cut(s) 287, 347, 662, 805, 827, 965, 1025
HspAI GCGC 1 cut(s) 1145
KasI GGCGCC 1 cut(s) 1144
KpnI GGTACC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 817
LmnI GCTCC 3 cut(s) 124, 240, 340
Lsp1109I GCAGC 8 cut(s) 158, 220, 255, 316, 622, 746, 820, 1141
LweI GCATC 6 cut(s) 22, 116, 784, 865, 989, 1099
MaeI CTAG 4 cut(s) 570, 593, 879, 1165
MaeIII GTNAC 1 cut(s) 901
MalI GATC 1 cut(s) 819
MboI GATC 1 cut(s) 817
MboII GAAGA 3 cut(s) 73, 1008, 1130
MfeI CAATTG 2 cut(s) 155, 906
MhlI GDGCHC 4 cut(s) 185, 419, 577, 1127
MlsI TGGCCA 2 cut(s) 782, 842
MluCI AATT 8 cut(s) 155, 304, 334, 511, 553, 650, 906, 947
MluNI TGGCCA 2 cut(s) 782, 842
Mly113I GGCGCC 1 cut(s) 1145
MlyI GAGTC 1 cut(s) 1155
MmeI TCCRAC 5 cut(s) 80, 99, 186, 303, 350
Mox20I TGGCCA 2 cut(s) 782, 842
Mph1103I ATGCAT 1 cut(s) 1004
MroXI GAANNNNTTC 2 cut(s) 65, 377
MscI TGGCCA 2 cut(s) 782, 842
MseI TTAA 2 cut(s) 11, 540
Msp20I TGGCCA 2 cut(s) 782, 842
MspR9I CCNGG 1 cut(s) 598
MunI CAATTG 2 cut(s) 155, 906
MvaI CCWGG 1 cut(s) 598
NarI GGCGCC 1 cut(s) 1145
NcoI CCATGG 1 cut(s) 283
NdeII GATC 1 cut(s) 817
NlaIII CATG 7 cut(s) 287, 347, 662, 805, 827, 965, 1025
NlaIV GGNNCC 2 cut(s) 80, 1146
NmuCI GTSAC 1 cut(s) 901
NsiI ATGCAT 1 cut(s) 1004
PagI TCATGA 1 cut(s) 801
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PdmI GAANNNNTTC 2 cut(s) 65, 377
PfeI GAWTC 2 cut(s) 160, 385
PflMI CCANNNNNTGG 2 cut(s) 920, 1022
PleI GAGTC 1 cut(s) 1155
PluTI GGCGCC 1 cut(s) 1148
PpsI GAGTC 1 cut(s) 1155
Psp124BI GAGCTC 2 cut(s) 419, 1127
Psp6I CCWGG 1 cut(s) 596
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 2 cut(s) 80, 1146
PspPI GGNCC 3 cut(s) 493, 897, 1051
RsaI GTAC 2 cut(s) 80, 1107
RsaNI GTAC 2 cut(s) 79, 1106
SacI GAGCTC 2 cut(s) 419, 1127
SaqAI TTAA 2 cut(s) 11, 540
Sau3AI GATC 1 cut(s) 817
Sau96I GGNCC 3 cut(s) 493, 897, 1051
SchI GAGTC 1 cut(s) 1155
ScrFI CCNGG 1 cut(s) 598
SduI GDGCHC 4 cut(s) 185, 419, 577, 1127
SfaNI GCATC 6 cut(s) 22, 116, 784, 865, 989, 1099
SfoI GGCGCC 1 cut(s) 1146
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 8 cut(s) 155, 304, 334, 511, 553, 650, 906, 947
SsiI CCGC 4 cut(s) 88, 230, 406, 427
SspDI GGCGCC 1 cut(s) 1144
SspMI CTAG 4 cut(s) 570, 593, 879, 1165
SstI GAGCTC 2 cut(s) 419, 1127
StyD4I CCNGG 1 cut(s) 596
StyI CCWWGG 3 cut(s) 283, 474, 1113
TaaI ACNGT 3 cut(s) 54, 627, 863
TaqI TCGA 4 cut(s) 353, 436, 643, 891
TasI AATT 8 cut(s) 155, 304, 334, 511, 553, 650, 906, 947
TatI WGTACW 1 cut(s) 1105
TauI GCSGC 3 cut(s) 91, 233, 430
TfiI GAWTC 2 cut(s) 160, 385
Tru1I TTAA 2 cut(s) 11, 540
Tru9I TTAA 2 cut(s) 11, 540
TscAI CASTG 3 cut(s) 429, 509, 866
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 8 cut(s) 146, 233, 243, 329, 635, 734, 833, 1129
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 2 cut(s) 273, 818
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 3 cut(s) 429, 509, 866
Van91I CCANNNNNTGG 2 cut(s) 920, 1022
XapI RAATTY 2 cut(s) 334, 553
XmnI GAANNNNTTC 2 cut(s) 65, 377
XspI CTAG 4 cut(s) 570, 593, 879, 1165
Zsp2I ATGCAT 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.