Rh7BG374400

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000856
Physical Location & Seq
Reverse (-)
40268409 .. 40272073
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG374400.1

Sequence Viewer

Length: 2964 bp
ATGGTTTTCATCGCAACCCCAAACCACAAAACCCTAACCCTAAATCTAAACCCCAAGACCACCACCCTCCTCACCCTAAAGCACCAAATCCAACAAACCTCCCTCATGCCCATCTCTCACCAGCGCCTATTCCTCTCCCAAAGCCTCCACTTATCCACCCAAAACGACGCCGCACTCCTCTCCGACCTCGGCATCGGACCCCTCTCCACCCTAACCCTCCACACCCCCTTCCTCGGCGGCAGTACTCAGCCCCACCGCTACGCCTTCCTCACAGCCAAGCCCCCGCCCAACTACGTCGCCGGCCTCGGCCGCGGCGCCACCGGCTTCACCACCCGCTCCGACATCGGCCCCGCCCGCCCCACTCCCCCTCCAATCGGAGCTGTTCGGGAAAATCCGGACGACGAGGACAAGGGTTACGACGAGAACCAGAAGTTCGACGAGTTTGAAGGAAACGACATGGGGCTTTTCGCCGACGCGGAGTACGACGAGGACGACGACGCGGCTGATGCTGTTTACTCTGCGGTTGATGAGAGGATGGACTCGAGGAGGAAGGAGAGGAGAGAGGCTAAGAAGAAGGAGATGGAGGAAAAGTCGAACGCTGAGAATCCGAAGAAGACCCCGGAGGAGTTGAAGAGGAAGCTGCGTTCCGTGTCCGTCAAGGAATGGGAGAGCTTACCAGAAATGGGGGATTATTCGTGGAAGAACAGGAAGAGGAGGAAGTTCGAGAGCTTTGTTCCGGTGCCGGATACCCTTTTCGAGAAGGCCAGGCTGGAGAGGCAGCATGTTGCGTCTGTAGACCCAATGAGTACAGATTTGACTGCATTGGGCGAGGGAAAGGGGACAGTGATGAAGCTGAAATTGGATAGGCTTTCGGATTCGGTTTCGGGTCTCACCAGTGTGGATCCAAAGGGGTATCTTAGTGGTCTTTTGAGTATGAATATGAATGTTAGTACTAGTTCTGATGTTTCGGATATAAAGAAGACTAGACAATTGTATAGGAGTGTAAGAGAGTCGAAGCCTAAGGACCCGTGTGGTTGGATTGCGGCTGCGAGGTTGGAGGAGATGGTGGGGAAGTTGAAGGAAGCCAGGGAGATCATTAAGAAAGGCTGTCATATGTGTCCGAGGAATGAGGATGTGTGGCTAGAGGCATGCAGGCTTGTCAGCCCCAGCGAAGCCAAGGTTGTTGTTGCTATGGGAGTGAAGCAGATACCGAATTCGGTGGACTTATGGATGAGGGCTGTGGATTTGGAGCATGATAAGTCGAATAAGAAGAAGGTGTTGTGGAAAGCGTTGGATCAAAGTAATGAAAATCTTCGTTGTGTTAGGCTGTGGAAGGCAGTGATGGATCTCTGTCATGAAGATGACAAGGATATGAAAGTTTTACTTCATAGGGCCGTGGAGGTTTGTCCGTTGGAGGTTCAATTTTGGGTTGCTCTTGCGAGGTCGGAAAGTTATGAGGCTGCCAAGATGATTCTTAATAATGCTAGAGTGCATCTTCCGAAAGAGCGCGCCATTTGGGTTGAAGCAGCCAAGTTGGAAGAAGTTAGGGGGAATGTGTCTAAGGTTGGGAAGATTATTGAAAGGGGTATAAAGCTTTTGCAGGAACAAGGGTTGGTGAATTTCAGAGAAACATGGATGAAGGAAGCTGAAAAGGTTGAGCGTGCTGGGCATGTTGCAGTTTGCCAAGCAATCATTCAAAACAGTGTTGGGGTTGGTGTTGAGGAAGTGGATAGGAAGAGGACTTGGCTTGCTGATGCAGAGGAGTACATGAAGAGTGGTTCCATCGAAACTGCCAGAGCAATTTATGCACATGCACTTACTGTTTTCTTAACCAAGAAGAGCGTATGGCGCAAGGCAGCAATGCTTGAAAAGAGCCATGGGACCAAGGAATCTCTTGATGCTTTGCTTCGTAGAGCAGTGAAGTACCTACCACAGGTTGAATTCTTTTGGCTTATGGCTGCTAAGGAAAACTGGCTTGCCGGGGATGTGAATGCTGCCCGAATGATCCTTGAAGAAGCTTCTAAATCCCTTCCCAATTCTGAAGAAATTATGCTTGCTGCATTTAAGTTAGAGTTTGAAAATCATGAGCAAGAGAGAGCTAGAATGATTCTTGACAAAACCCGAGCAAGGGTAGACAGTGGAAGAGTATGGATGAAATCAGCAATTCTTCAGAGAGAATTAGGGAACTCTGATGAGGAGAAGAAGTTTCTTGAGGAAGGGTTGAAGCGCTTCCCCTCATTCTTTAAATTGTGGTTGATGCTTGGACAGCTAGAGGAACGCCTCAATCATTTTCAAAAAGCCAAGGCCGCGTATGAATCGGGTCTCAAGCACTGCTCCAATTGTATACCGCTCTGGCTTTCTCTAGCAAATCTTGAAGAGAAGAGAAATGGTCTGAGTAAAGCTCGTGCAGTTCTGACAACAGCCAGGAAGAAGAACTCTCGTAATCCTGAACTGTGGCTTGCTGCTGTTCGAGCTGAACTAAGGCATGGTAATAAGAGGGAAGCTGATACTTTGATGGCAAAGGCTTTGCGGGAGCAGGAGTGTCCCAATAGTGGTATCTTGTGGGCAGCATCTATTGGGATGGTACCCGGTCCTCAAAGGAAGACCAAAAGTCTAGATGCCTACAAATATTGTGGTAAGGAAGATCCCCATGTTAATGCTGCTGTGGCCAAGTTATTTTGGCGTGAAAGAAAGATAGACAGAGCTAGGACTAAGCTCAACCTGGCAGTTACACATGCCCCAGATATTGGAGATTTCTGGACTTTATACTACAAGTTTGAACTTCAGAATGGAACTGAGGATACCCGGAAGGACGTACTGGAAAGGTGTGTTGCTGCACAACCAAAGCATGGTGAAAAATGGCAAACTATTTCAAAGGCAGTGGAGAACTGGCACCAACCAACTGAAGCTATCTTGAAGAAAGCTGTGAAGGAAGATGCAGCCACAGCTCAAAATCAACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

987

Amino Acids

112.01

Weight (kDa)

9.02

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 94 - 233 4e-44 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2584
AccB1I GGYRCC 4 cut(s) 314, 739, 2584, 2892
AccB7I CCANNNNNTGG 2 cut(s) 2747, 2849
AccBSI CCGCTC 2 cut(s) 336, 2350
AccI GTMKAC 3 cut(s) 795, 2133, 2344
AccII CGCG 5 cut(s) 312, 476, 500, 1509, 2309
AccIII TCCGGA 1 cut(s) 394
AclWI GGATC 6 cut(s) 896, 909, 1302, 1353, 1999, 2639
AcoI YGGCCR 2 cut(s) 307, 2667
AcsI RAATTY 3 cut(s) 1213, 1618, 1940
AcuI CTGAAG 4 cut(s) 2061, 2153, 2768, 2925
AcyI GRCGYC 2 cut(s) 168, 315
AfaI GTAC 8 cut(s) 244, 482, 808, 952, 1766, 1925, 2586, 2817
AfeI AGCGCT 1 cut(s) 2228
AfiI CCNNNNNNNGG 9 cut(s) 233, 374, 683, 1933, 2127, 2128, 2552, 2747, 2849
AhdI GACNNNNNGTC 1 cut(s) 2610
AhlI ACTAGT 1 cut(s) 953
AjnI CCWGG 4 cut(s) 764, 1085, 2423, 2721
AjuI GAANNNNNNNTTGG 4 cut(s) 842, 874, 1677, 1709
AleI CACNNNNGTG 1 cut(s) 896
AloI GAACNNNNNNTCC 2 cut(s) 628, 660
Alw26I GTCTC 2 cut(s) 893, 2327
AlwI GGATC 6 cut(s) 896, 909, 1302, 1353, 1999, 2639
Ama87I CYCGRG 2 cut(s) 541, 2121
Aor13HI TCCGGA 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 2228
AoxI GGCC 7 cut(s) 301, 307, 346, 762, 1392, 2304, 2667
ApoI RAATTY 3 cut(s) 1213, 1618, 1940
Asp700I GAANNNNTTC 2 cut(s) 1311, 2228
Asp718I GGTACC 1 cut(s) 2584
AspLEI GCGC 6 cut(s) 126, 317, 1509, 1511, 1851, 2229
AspS9I GGNCC 6 cut(s) 197, 347, 1024, 1392, 1881, 2591
AsuC2I CCSGG 4 cut(s) 620, 1981, 2589, 2806
AsuHPI GGTGA 6 cut(s) 64, 110, 319, 883, 1627, 2864
AvaI CYCGRG 2 cut(s) 541, 2121
AvaII GGWCC 4 cut(s) 197, 1024, 1881, 2591
AxyI CCTNAGG 1 cut(s) 1020
BalI TGGCCA 1 cut(s) 2669
BamHI GGATCC 1 cut(s) 901
BanI GGYRCC 4 cut(s) 314, 739, 2584, 2892
BauI CACGAG 1 cut(s) 2403
BbsI GAAGAC 3 cut(s) 620, 986, 2609
BccI CCATC 8 cut(s) 119, 529, 574, 1057, 1336, 1790, 2509, 2575
BceAI ACGGC 1 cut(s) 1379
BciT130I CCWGG 4 cut(s) 766, 1087, 2425, 2723
BciVI GTATCC 2 cut(s) 739, 2794
BcnI CCSGG 4 cut(s) 620, 1981, 2589, 2806
BcoDI GTCTC 2 cut(s) 893, 2327
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 9 cut(s) 954, 984, 1142, 1485, 2100, 2270, 2363, 2615, 2706
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 3 cut(s) 127, 318, 2230
BfuI GTATCC 2 cut(s) 739, 2794
BmcAI AGTACT 2 cut(s) 244, 952
Bme1390I CCNGG 8 cut(s) 620, 766, 1087, 1981, 2425, 2589, 2723, 2806
Bme18I GGWCC 4 cut(s) 197, 1024, 1881, 2591
BmeRI GACNNNNNGTC 1 cut(s) 2610
BmeT110I CYCGRG 2 cut(s) 541, 2121
BmgT120I GGNCC 6 cut(s) 197, 347, 1024, 1392, 1881, 2591
BmrFI CCNGG 8 cut(s) 620, 766, 1087, 1981, 2425, 2589, 2723, 2806
BmsI GCATC 9 cut(s) 201, 496, 1501, 1744, 1888, 2247, 2579, 2608, 2926
BpiI GAAGAC 3 cut(s) 620, 986, 2609
BplI GAGNNNNNCTC 2 cut(s) 2386, 2418
BpmI CTGGAG 1 cut(s) 791
Bpu10I CCTNAGC 1 cut(s) 1962
BpuEI CTTGAG 2 cut(s) 2231, 2309
BpuMI CCSGG 4 cut(s) 620, 1981, 2589, 2806
BsaHI GRCGYC 2 cut(s) 168, 315
BsaI GGTCTC 2 cut(s) 893, 2327
BsaWI WCCGGW 2 cut(s) 394, 736
BsaXI ACNNNNNCTCC 8 cut(s) 352, 382, 575, 605, 2189, 2219, 2525, 2555
Bsc4I CCNNNNNNNGG 9 cut(s) 233, 374, 683, 1933, 2127, 2128, 2552, 2747, 2849
Bse118I RCCGGY 2 cut(s) 299, 320
Bse1I ACTGG 4 cut(s) 894, 1976, 2823, 2894
Bse21I CCTNAGG 1 cut(s) 1020
Bse3DI GCAATG 1 cut(s) 1866
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 4 cut(s) 766, 1087, 2425, 2723
BseGI GGATG 7 cut(s) 540, 1138, 1236, 1641, 1990, 2157, 2586
BseLI CCNNNNNNNGG 9 cut(s) 233, 374, 683, 1933, 2127, 2128, 2552, 2747, 2849
BseMI GCAATG 1 cut(s) 1866
BseMII CTCAG 4 cut(s) 260, 591, 2384, 2787
BseNI ACTGG 4 cut(s) 894, 1976, 2823, 2894
BsePI GCGCGC 1 cut(s) 1507
BseRI GAGGAG 9 cut(s) 59, 167, 559, 571, 638, 727, 1073, 1775, 2210
BseX3I CGGCCG 1 cut(s) 307
BseYI CCCAGC 2 cut(s) 1166, 1664
BsgI GTGCAG 2 cut(s) 2427, 2820
Bsh1236I CGCG 5 cut(s) 312, 476, 500, 1509, 2309
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 7 cut(s) 303, 309, 348, 764, 1394, 2306, 2669
BshNI GGYRCC 4 cut(s) 314, 739, 2584, 2892
BsiEI CGRYCG 1 cut(s) 310
BsiHKCI CYCGRG 2 cut(s) 541, 2121
BsiSI CCGG 9 cut(s) 300, 321, 395, 620, 737, 743, 1980, 2589, 2806
BslFI GGGAC 3 cut(s) 853, 1894, 2529
BslI CCNNNNNNNGG 9 cut(s) 233, 374, 683, 1933, 2127, 2128, 2552, 2747, 2849
BsmAI GTCTC 2 cut(s) 893, 2327
BsmFI GGGAC 3 cut(s) 853, 1894, 2529
BsmI GAATGC 1 cut(s) 1996
BsnI GGCC 7 cut(s) 303, 309, 348, 764, 1394, 2306, 2669
Bso31I GGTCTC 2 cut(s) 893, 2327
BsoBI CYCGRG 2 cut(s) 541, 2121
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
Bsp19I CCATGG 1 cut(s) 1876
BspANI GGCC 7 cut(s) 303, 309, 348, 764, 1394, 2306, 2669
BspCNI CTCAG 4 cut(s) 259, 592, 2385, 2788
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 5 cut(s) 312, 476, 500, 1509, 2309
BspHI TCATGA 2 cut(s) 1354, 2083
BspPI GGATC 6 cut(s) 896, 909, 1302, 1353, 1999, 2639
BspQI GCTCTTC 1 cut(s) 1832
BspT107I GGYRCC 4 cut(s) 314, 739, 2584, 2892
BspTNI GGTCTC 2 cut(s) 893, 2327
BsrBI CCGCTC 2 cut(s) 336, 2350
BsrDI GCAATG 1 cut(s) 1866
BsrFI RCCGGY 2 cut(s) 299, 320
BsrI ACTGG 4 cut(s) 894, 1976, 2823, 2894
BssAI RCCGGY 2 cut(s) 299, 320
BssHII GCGCGC 1 cut(s) 1507
BssMI GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
BssNAI GTATAC 1 cut(s) 2345
BssNI GRCGYC 2 cut(s) 168, 315
BssSI CACGAG 1 cut(s) 2403
BssT1I CCWWGG 4 cut(s) 1176, 1876, 1884, 2301
Bst1107I GTATAC 1 cut(s) 2345
Bst2BI CACGAG 1 cut(s) 2403
Bst2UI CCWGG 4 cut(s) 766, 1087, 2425, 2723
Bst4CI ACNGT 6 cut(s) 844, 1703, 1822, 2138, 2454, 2961
Bst6I CTCTTC 8 cut(s) 626, 704, 1730, 1766, 1832, 2137, 2370, 2375
BstACI GRCGYC 2 cut(s) 168, 315
BstAPI GCANNNNNTGC 1 cut(s) 1805
BstDSI CCRYGG 3 cut(s) 310, 1395, 1876
BstENI CCTNNNNNAGG 1 cut(s) 1931
BstF5I GGATG 7 cut(s) 540, 1138, 1236, 1641, 1990, 2157, 2586
BstFNI CGCG 5 cut(s) 312, 476, 500, 1509, 2309
BstH2I RGCGCY 3 cut(s) 127, 318, 2230
BstHHI GCGC 6 cut(s) 126, 317, 1509, 1511, 1851, 2229
BstKTI GATC 6 cut(s) 904, 1095, 1297, 1348, 2007, 2647
BstMAI GTCTC 2 cut(s) 893, 2327
BstMBI GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
BstMCI CGRYCG 1 cut(s) 310
BstNI CCWGG 4 cut(s) 766, 1087, 2425, 2723
BstNSI RCATGY 5 cut(s) 785, 1152, 1673, 1814, 2738
BstSCI CCNGG 8 cut(s) 618, 764, 1085, 1979, 2423, 2587, 2721, 2804
BstSFI CTRYAG 1 cut(s) 792
BstUI CGCG 5 cut(s) 312, 476, 500, 1509, 2309
BstV2I GAAGAC 3 cut(s) 620, 986, 2609
BstX2I RGATCY 3 cut(s) 901, 1345, 2644
BstYI RGATCY 3 cut(s) 901, 1345, 2644
BstZ17I GTATAC 1 cut(s) 2345
BstZI CGGCCG 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 1020
BsuI GTATCC 2 cut(s) 739, 2794
BsuRI GGCC 7 cut(s) 303, 309, 348, 764, 1394, 2306, 2669
BtgI CCRYGG 3 cut(s) 310, 1395, 1876
BtsCI GGATG 7 cut(s) 540, 1138, 1236, 1641, 1990, 2157, 2586
BtsI GCAGTG 4 cut(s) 1344, 1923, 2329, 2886
BtsIMutI CAGTG 8 cut(s) 849, 901, 1344, 1708, 1923, 2143, 2329, 2886
CciI TCATGA 2 cut(s) 1354, 2083
CfoI GCGC 6 cut(s) 126, 317, 1509, 1511, 1851, 2229
Cfr10I RCCGGY 2 cut(s) 299, 320
Cfr13I GGNCC 6 cut(s) 197, 347, 1024, 1392, 1881, 2591
Cfr42I CCGCGG 1 cut(s) 313
CseI GACGC 4 cut(s) 176, 482, 506, 777
Csp6I GTAC 8 cut(s) 243, 481, 807, 951, 1765, 1924, 2585, 2816
CspCI CAANNNNNGTGG 4 cut(s) 2614, 2649, 2862, 2897
CviQI GTAC 8 cut(s) 243, 481, 807, 951, 1765, 1924, 2585, 2816
DinI GGCGCC 1 cut(s) 316
DpnI GATC 6 cut(s) 903, 1094, 1296, 1347, 2006, 2646
DpnII GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
DraI TTTAAA 1 cut(s) 2245
DriI GACNNNNNGTC 1 cut(s) 2610
EaeI YGGCCR 2 cut(s) 307, 2667
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 8 cut(s) 626, 704, 1730, 1766, 1832, 2137, 2370, 2375
Eam1105I GACNNNNNGTC 1 cut(s) 2610
EarI CTCTTC 8 cut(s) 626, 704, 1730, 1766, 1832, 2137, 2370, 2375
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 4 cut(s) 1176, 1876, 1884, 2301
Eco31I GGTCTC 2 cut(s) 893, 2327
Eco47I GGWCC 4 cut(s) 197, 1024, 1881, 2591
Eco47III AGCGCT 1 cut(s) 2228
Eco52I CGGCCG 1 cut(s) 307
Eco57I CTGAAG 4 cut(s) 2061, 2153, 2768, 2925
Eco81I CCTNAGG 1 cut(s) 1020
Eco88I CYCGRG 2 cut(s) 541, 2121
EcoNI CCTNNNNNAGG 1 cut(s) 1931
EcoO109I RGGNCCY 1 cut(s) 1024
EcoRI GAATTC 2 cut(s) 1213, 1940
EcoRII CCWGG 4 cut(s) 764, 1085, 2423, 2721
EcoT14I CCWWGG 4 cut(s) 1176, 1876, 1884, 2301
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
ErhI CCWWGG 4 cut(s) 1176, 1876, 1884, 2301
FalI AAGNNNNNCTT 2 cut(s) 1368, 1400
FaqI GGGAC 3 cut(s) 853, 1894, 2529
FauI CCCGC 5 cut(s) 291, 341, 358, 362, 2523
FauNDI CATATG 1 cut(s) 1113
FblI GTMKAC 3 cut(s) 795, 2133, 2344
FokI GGATG 7 cut(s) 547, 1145, 1243, 1648, 1997, 2164, 2593
FspBI CTAG 9 cut(s) 954, 984, 1142, 1485, 2100, 2270, 2363, 2615, 2706
GlaI GCGC 6 cut(s) 125, 316, 1508, 1510, 1850, 2228
GsaI CCCAGC 2 cut(s) 1170, 1668
GsuI CTGGAG 1 cut(s) 791
HaeII RGCGCY 3 cut(s) 127, 318, 2230
HaeIII GGCC 7 cut(s) 303, 309, 348, 764, 1394, 2306, 2669
HapII CCGG 9 cut(s) 300, 321, 395, 620, 737, 743, 1980, 2589, 2806
HgaI GACGC 4 cut(s) 176, 482, 506, 777
HhaI GCGC 6 cut(s) 126, 317, 1509, 1511, 1851, 2229
Hin1I GRCGYC 2 cut(s) 168, 315
Hin6I GCGC 6 cut(s) 124, 315, 1507, 1509, 1849, 2227
HinP1I GCGC 6 cut(s) 124, 315, 1507, 1509, 1849, 2227
HindIII AAGCTT 2 cut(s) 1592, 2016
HinfI GANTC 8 cut(s) 539, 604, 875, 1010, 1471, 1889, 2107, 2315
HpaII CCGG 9 cut(s) 300, 321, 395, 620, 737, 743, 1980, 2589, 2806
HphI GGTGA 6 cut(s) 64, 110, 319, 883, 1627, 2864
Hpy166II GTNNAC 5 cut(s) 514, 796, 1222, 2134, 2345
Hpy8I GTNNAC 5 cut(s) 514, 796, 1222, 2134, 2345
Hpy99I CGWCG 9 cut(s) 170, 299, 404, 422, 440, 476, 488, 497, 500
HpyCH4III ACNGT 6 cut(s) 844, 1703, 1822, 2138, 2454, 2961
HpyCH4IV ACGT 2 cut(s) 294, 2814
HpySE526I ACGT 2 cut(s) 294, 2814
Hsp92I GRCGYC 2 cut(s) 168, 315
HspAI GCGC 6 cut(s) 124, 315, 1507, 1509, 1849, 2227
KasI GGCGCC 1 cut(s) 314
Kpn2I TCCGGA 1 cut(s) 394
KpnI GGTACC 1 cut(s) 2588
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
KspI CCGCGG 1 cut(s) 313
Kzo9I GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
LguI GCTCTTC 1 cut(s) 1832
LmnI GCTCC 5 cut(s) 341, 377, 1249, 2339, 2533
LweI GCATC 9 cut(s) 201, 496, 1501, 1744, 1888, 2247, 2579, 2608, 2926
MaeI CTAG 9 cut(s) 954, 984, 1142, 1485, 2100, 2270, 2363, 2615, 2706
MaeII ACGT 2 cut(s) 294, 2814
MaeIII GTNAC 2 cut(s) 413, 2728
MalI GATC 6 cut(s) 903, 1094, 1296, 1347, 2006, 2646
MbiI CCGCTC 2 cut(s) 336, 2350
MboI GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
MfeI CAATTG 2 cut(s) 989, 2338
MflI RGATCY 3 cut(s) 901, 1345, 2644
MlsI TGGCCA 1 cut(s) 2669
MluNI TGGCCA 1 cut(s) 2669
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 2 cut(s) 533, 1019
MmeI TCCRAC 9 cut(s) 115, 207, 363, 1016, 1035, 1272, 1392, 1425, 1515
Mox20I TGGCCA 1 cut(s) 2669
MroI TCCGGA 1 cut(s) 394
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 2 cut(s) 1311, 2228
MscI TGGCCA 1 cut(s) 2669
MseI TTAA 6 cut(s) 1098, 1476, 1829, 2064, 2244, 2655
MslI CAYNNNNRTG 3 cut(s) 896, 1359, 2655
Msp20I TGGCCA 1 cut(s) 2669
MspA1I CMGCKG 1 cut(s) 312
MspI CCGG 9 cut(s) 300, 321, 395, 620, 737, 743, 1980, 2589, 2806
MspR9I CCNGG 8 cut(s) 620, 766, 1087, 1981, 2425, 2589, 2723, 2806
MunI CAATTG 2 cut(s) 989, 2338
Mva1269I GAATGC 1 cut(s) 1996
MvaI CCWGG 4 cut(s) 766, 1087, 2425, 2723
MvnI CGCG 5 cut(s) 312, 476, 500, 1509, 2309
NaeI GCCGGC 1 cut(s) 301
NarI GGCGCC 1 cut(s) 315
NciI CCSGG 4 cut(s) 620, 1981, 2589, 2806
NcoI CCATGG 1 cut(s) 1876
NdeI CATATG 1 cut(s) 1113
NdeII GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
NgoMIV GCCGGC 1 cut(s) 299
NmeAIII GCCGAG 3 cut(s) 168, 213, 285
NspI RCATGY 5 cut(s) 785, 1152, 1673, 1814, 2738
OliI CACNNNNGTG 1 cut(s) 896
PaeI GCATGC 1 cut(s) 1152
PaeR7I CTCGAG 1 cut(s) 541
PagI TCATGA 2 cut(s) 1354, 2083
PauI GCGCGC 1 cut(s) 1507
PciSI GCTCTTC 1 cut(s) 1832
PcsI WCGNNNNNNNCGW 3 cut(s) 480, 489, 492
PctI GAATGC 1 cut(s) 1996
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 2 cut(s) 1311, 2228
PfeI GAWTC 6 cut(s) 604, 875, 1471, 1889, 2107, 2315
PflMI CCANNNNNTGG 2 cut(s) 2747, 2849
PleI GAGTC 2 cut(s) 533, 1018
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 2 cut(s) 533, 1018
PpuMI RGGWCCY 1 cut(s) 1024
Psp5II RGGWCCY 1 cut(s) 1024
Psp6I CCWGG 4 cut(s) 764, 1085, 2423, 2721
PspFI CCCAGC 2 cut(s) 1166, 1664
PspGI CCWGG 4 cut(s) 764, 1085, 2423, 2721
PspPI GGNCC 6 cut(s) 197, 347, 1024, 1392, 1881, 2591
PspPPI RGGWCCY 1 cut(s) 1024
PspXI VCTCGAGB 1 cut(s) 541
PsrI GAACNNNNNNTAC 2 cut(s) 2785, 2817
PsuI RGATCY 3 cut(s) 901, 1345, 2644
PteI GCGCGC 1 cut(s) 1507
RsaI GTAC 8 cut(s) 244, 482, 808, 952, 1766, 1925, 2586, 2817
RsaNI GTAC 8 cut(s) 243, 481, 807, 951, 1765, 1924, 2585, 2816
RseI CAYNNNNRTG 3 cut(s) 896, 1359, 2655
SacII CCGCGG 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 1832
SaqAI TTAA 6 cut(s) 1098, 1476, 1829, 2064, 2244, 2655
Sau3AI GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
Sau96I GGNCC 6 cut(s) 197, 347, 1024, 1392, 1881, 2591
ScaI AGTACT 2 cut(s) 244, 952
SchI GAGTC 2 cut(s) 533, 1019
ScrFI CCNGG 8 cut(s) 620, 766, 1087, 1981, 2425, 2589, 2723, 2806
SfaNI GCATC 9 cut(s) 201, 496, 1501, 1744, 1888, 2247, 2579, 2608, 2926
SfcI CTRYAG 1 cut(s) 792
SfoI GGCGCC 1 cut(s) 316
Sfr274I CTCGAG 1 cut(s) 541
Sfr303I CCGCGG 1 cut(s) 313
SgrBI CCGCGG 1 cut(s) 313
SinI GGWCC 4 cut(s) 197, 1024, 1881, 2591
SlaI CTCGAG 1 cut(s) 541
SmiMI CAYNNNNRTG 3 cut(s) 896, 1359, 2655
SmlI CTYRAG 3 cut(s) 541, 2210, 2324
SmoI CTYRAG 3 cut(s) 541, 2210, 2324
SpeI ACTAGT 1 cut(s) 953
SphI GCATGC 1 cut(s) 1152
SspDI GGCGCC 1 cut(s) 314
SspI AATATT 1 cut(s) 2630
SspMI CTAG 9 cut(s) 954, 984, 1142, 1485, 2100, 2270, 2363, 2615, 2706
StyD4I CCNGG 8 cut(s) 618, 764, 1085, 1979, 2423, 2587, 2721, 2804
StyI CCWWGG 4 cut(s) 1176, 1876, 1884, 2301
TaaI ACNGT 6 cut(s) 844, 1703, 1822, 2138, 2454, 2961
TaiI ACGT 2 cut(s) 297, 2817
TaqI TCGA 9 cut(s) 435, 542, 593, 723, 756, 1013, 1262, 1785, 2470
TatI WGTACW 4 cut(s) 242, 806, 950, 1764
TauI GCSGC 7 cut(s) 173, 240, 312, 315, 503, 1046, 2309
TfiI GAWTC 6 cut(s) 604, 875, 1471, 1889, 2107, 2315
Tru1I TTAA 6 cut(s) 1098, 1476, 1829, 2064, 2244, 2655
Tru9I TTAA 6 cut(s) 1098, 1476, 1829, 2064, 2244, 2655
TscAI CASTG 8 cut(s) 849, 901, 1344, 1708, 1923, 2143, 2336, 2886
TspGWI ACGGA 3 cut(s) 637, 643, 1398
TspRI CASTG 8 cut(s) 849, 901, 1344, 1708, 1923, 2143, 2336, 2886
Van91I CCANNNNNTGG 2 cut(s) 2747, 2849
VpaK11BI GGWCC 4 cut(s) 197, 1024, 1881, 2591
XagI CCTNNNNNAGG 1 cut(s) 1931
XapI RAATTY 3 cut(s) 1213, 1618, 1940
XbaI TCTAGA 1 cut(s) 2614
XceI RCATGY 5 cut(s) 785, 1152, 1673, 1814, 2738
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 3 cut(s) 795, 2133, 2344
XmnI GAANNNNTTC 2 cut(s) 1311, 2228
XspI CTAG 9 cut(s) 954, 984, 1142, 1485, 2100, 2270, 2363, 2615, 2706
ZrmI AGTACT 2 cut(s) 244, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.