MD17G1244100.v1.1

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000856
Physical Location & Seq
Forward (+)
29259011 .. 29264317
5307 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1244100.v1.1.491

Sequence Viewer

Length: 3081 bp
ATGGTGTTCATCACATCCCCAAATCACAAAACCCTAACCCTAAATCTAAACCCTAAGACCACCACCCTCAAAACCTTAAAGCTCCAAATCGAGCAAAATTCTCACATACCCATTTCTCAGCAGCGCCTATTCATCTCCCAAAGCCTCCAGTTACTCACCCAATCCGACTCCTCCCTCCTCTCCGACCTCGGAATCCGACCCCTGTCAACCCTAACTCTTCACATTCCCTTATTCGGCGGCACCCAACCTCCCGCCGTCCCTAAACCCCGCCTCGAGTTCCTCAATTCCAAGCCTCCCCCGAATTATGTCGCTGGGCTCGGCCGTGGTGCCACTGGCTTCACCACCAGGTCCGATATCGGGCCCGCACGTGCTGCGCCAGACCTGCCGGACAGGTCGGCCACCACAATCGGCGGCGCTGCTGCTCCTGCTGCCCCGCCTGGGGTTGGCCGCGGACGCGGGAAGCCCGAGGAAGAGGAGGAGGACGAAGGGGAGGATAAGGGGTACGATGAGAATCAGAAGTTTGATGAATTCGAAGGAAATGATGTTGGGTTGTTTGCATCGGCGGAATACGATGATGAGGACAAGGAGGCTGATGCGGTGTGGGAAGCCATTGAGCAAAGAATGGACTCGAGGAGGAAGGACAGGAGAGAAGCTCGGTTGAAAGAAGAGATTGAAAAGTACAGAGCTTCGAACCCGAAGATCACGGAGCAATTCGCGACTCTGAAGAGGAAGTTGTACACCGTGTCTGCTCAGGAATGGGAGAGCATACCTGAAATCGGAGACTATTCGTCGAGGAACAAGAAGAAGAGATTCGAGAGCTTTGTGCCGGTGCCCGATACACTTTTAGAGAAGGCAAGACAGGAAAAGGAGCATGTTACGGCATTGGACCCCAAGAGTAGGGGAGCTGGTGGTATGGAGACTCCATGGTCTCAAACTCCGGTTACGGATTTGACTGCTGTAGGTGAGGGTAGAGGTACTGTTTTGTCATTAAAATTAGATAGGCTTTCTGATTCTGTTTCTGGATTGACGGTTGTGGACCCGAAAGGGTACCTTACTGATCTTAAGAGTATGAAGATTACTAGTGATGCTGAGATTTCGGATATTAAAAAGGCTAGGTTGTTGCTTAAGAGTGTTACACAGACGAATCCAAAGCACCCACCTGGATGGATTGCGGCTGCCAGGCTGGAGGAGGTGGCTGGGAAGATTCAGGCAGCTAGACAATTGATTCAGAAAGGGTGTGAGGAATGTCCTAAGAGTGAGGATGTGTGGTTAGAGGCATGTAGGCTTTCAAGCCCTGATGAAGCTAAGGCCGTGATTTCTAAGGGAGTGAAGTCGATTCCCAATTCGGTGAAGTTGTGGATGCAGGCTGCGAAATTGGAGCGTGACGATTTGAATAGGAGCAGGGTATTGAGGAAAGGTTTGGAACACATTCCCGATTCTGTTAGGTTATGGAAGGCGGTGGTGGAGCTTGCCAATGAGGAGGATGCGAGACTTTTGCTTCATAGGGCTGTGGAGTGTTGTCCCTTGCACATTGAGTTATGGCTTGCACTTGCAAGATTGGAAACTTATGAGAATGCAAGGAAGGTCCTTAATAGGGCAAGAGAGAAGCTATCAAAAGAGCCTGCCATTTGGATCACAGCAGCGAAGTTGGAGGAAGCTAATGGGAACACAGCCATGGTTGGGAAGATTATTGAAAGGGGTATAAGGGCTTTGCAAAGAGAAGGGTTGGCGATTGATAGAGAGGCATGGATGAAGGAGGCTGAAGCTGCTGAACGTGCAGGGTCTGTTGCAACTTGCCAAGCAATCATTCGGAACACGATTGGGATTGGTGTGGAGGAAGAGGATAGGAAGAGGACATGGGTTGCTGATGCTGAGGAATGCAAGAAAAGGGGTTCCATTGAAACAGCCAGGGCCATTTATGCACACGCACTTACTGTCTTTTTAACCAAGAAGAGCATATGGCTCAAAGCTGCACAGCTTGAAAAGAGCCATGGTACTAGGGAATCTCTTGATGCTTTACTTCGTAAAGCGGTGACTTACCGACCACAGGCTGAAGTCTTGTGGCTTATGGGAGCTAAGGAGAAGTGGCTTGCTGGGGATGTGCCTGCTGCTCGTGCCATCCTTCAAGAAGCTTATGCTGCCATTCCTAATTCTGAGGAAATTTGGCTTGCTGCGTTTAAACTTGAATTTGAGAACCATGAACCAGAGAGAGCCAGAATGCTTCTTGCCAAAGCCCGAGAAAAGGGAGGTACTGAAAGAGTGTGGATGAAATCAGCAATTGTTGAGAGAGAATTAGGGAACATTAATGAGGAGAGGAAGTTGCTTGATGATGGGTTGAAGCGCTTCCCTTCCTTCTATAAATTATGGTTGATGCTTGGACAGCTAGAGGAACGCCTTGGTCATTTGGAAAAGGCCAAGGAGGCCTATGATTCAGGTCAGAAGCACTGCTCCAGTTCTATTCCACTGTGGCTTTCTCTTGCTAATCTTGAAGAGAAGATGAGTGGGCTGAGTAAAGCTCGTGCAATTCTGACGATGGCCAGGAAGAAGAATCCTCAGAACCCTGAATTGTGGCTTGCTGCTGTTCGAGCTGAATTAAGGCATGGAAATAAGAAGGAAGCTGATATCTTGATGGCAAAGGCTTTGCAGGAGTGTCCCAATAGTGGTATCTTGTGGGCTGCGTCTATTGAGATGGTACCCCGTCCGCAACGGAAGACAAAGAGTATGGATGCCCTCAAGAAATGTGATCATGATCCCCATGTCATTGCTGCTGTGTCTAAGTTATTTTGGCATGACAGGAAGGTTGACAAAGCTAGGACTTGGCTTAACAGGGCAGTGACACTAGCGCCAGATATTGGGGATTTCTGGGCTTTGTACTACAAATTTGAACTTCAACATGGGACCGAGGAGAACCAGAAAGATGTACTTAAAAGATGCATAGCTGCAGAACCAAAGCATGGTGAAAAATGGCAACCTATTTCAAAGGCCGTGGAGAACTCCCACCAACCAACCGAAGCTATCTTGAAGAAAGTGGTGGTTGCTCTTGGGAAGGAAGAGAGTGCAGCTGAAAATAATAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

1027

Amino Acids

114.87

Weight (kDa)

8.66

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 2 - 75 3.7e-06 Ubiquitin family
PRP1_N PF06424 98 - 265 5.8e-53 PRP1 splicing factor, N-terminal
Suf PF05843 421 - 574 7.5e-07 Suppressor of forked protein (Suf)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 390
Acc65I GGTACC 2 cut(s) 1047, 2692
AccB1I GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
AccB7I CCANNNNNTGG 2 cut(s) 2852, 2954
AccII CGCG 3 cut(s) 450, 456, 716
AclWI GGATC 2 cut(s) 1640, 2744
AcoI YGGCCR 4 cut(s) 319, 396, 445, 2535
AcsI RAATTY 5 cut(s) 97, 527, 2160, 2186, 2879
AcuI CTGAAG 3 cut(s) 743, 1782, 2073
AcvI CACGTG 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 2342
AflII CTTAAG 2 cut(s) 1061, 1124
AhdI GACNNNNNGTC 1 cut(s) 787
AhlI ACTAGT 1 cut(s) 1079
AjnI CCWGG 6 cut(s) 344, 436, 1159, 1178, 1907, 2537
AjuI GAANNNNNNNTTGG 2 cut(s) 1791, 1823
Alw26I GTCTC 4 cut(s) 774, 911, 933, 1483
AlwI GGATC 2 cut(s) 1640, 2744
AlwNI CAGNNNCTG 1 cut(s) 1784
Ama87I CYCGRG 4 cut(s) 272, 464, 628, 2235
Aor51HI AGCGCT 1 cut(s) 2342
ApaI GGGCCC 1 cut(s) 363
ApoI RAATTY 5 cut(s) 97, 527, 2160, 2186, 2879
AseI ATTAAT 1 cut(s) 2304
Asp700I GAANNNNTTC 3 cut(s) 809, 1428, 2342
Asp718I GGTACC 2 cut(s) 1047, 2692
AspLEI GCGC 5 cut(s) 126, 376, 416, 2343, 2845
AspS9I GGNCC 8 cut(s) 348, 359, 360, 886, 1036, 1585, 1911, 2898
AsuHPI GGTGA 6 cut(s) 148, 331, 974, 1360, 2044, 2969
AsuII TTCGAA 2 cut(s) 531, 689
AvaI CYCGRG 4 cut(s) 272, 464, 628, 2235
AvaII GGWCC 5 cut(s) 348, 886, 1036, 1585, 2898
BaeGI GKGCMC 2 cut(s) 363, 834
BalI TGGCCA 1 cut(s) 2537
BanI GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
BanII GRGCYC 2 cut(s) 318, 363
BauI CACGAG 2 cut(s) 2112, 2517
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 2717
BbvCI CCTCAGC 1 cut(s) 1872
BccI CCATC 6 cut(s) 1158, 2126, 2324, 2527, 2623, 2683
BceAI ACGGC 5 cut(s) 239, 306, 894, 1295, 2969
BcgI CGANNNNNNTGC 2 cut(s) 1477, 1511
BciT130I CCWGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
BclI TGATCA 1 cut(s) 2743
BcoDI GTCTC 4 cut(s) 774, 911, 933, 1483
BcuI ACTAGT 1 cut(s) 1079
BfaI CTAG 7 cut(s) 1080, 1113, 1215, 1998, 2384, 2811, 2840
BfmI CTRYAG 2 cut(s) 957, 2940
BfoI RGCGCY 4 cut(s) 127, 417, 2344, 2846
BfrI CTTAAG 2 cut(s) 1061, 1124
BfuAI ACCTGC 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 2420
Bme1390I CCNGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
Bme18I GGWCC 5 cut(s) 348, 886, 1036, 1585, 2898
BmeRI GACNNNNNGTC 1 cut(s) 787
BmeT110I CYCGRG 4 cut(s) 272, 464, 628, 2235
BmgT120I GGNCC 8 cut(s) 348, 359, 360, 886, 1036, 1585, 1911, 2898
BmrFI CCNGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
BoxI GACNNNNGTC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 2717
BplI GAGNNNNNCTC 4 cut(s) 637, 669, 2500, 2532
BpmI CTGGAG 3 cut(s) 131, 1205, 2434
Bpu10I CCTNAGC 4 cut(s) 750, 1305, 1872, 2076
Bpu14I TTCGAA 2 cut(s) 531, 689
BpuEI CTTGAG 1 cut(s) 2717
BsaAI YACGTR 1 cut(s) 368
BsaBI GATNNNNATC 2 cut(s) 510, 2748
BsaI GGTCTC 1 cut(s) 933
BsaWI WCCGGW 1 cut(s) 937
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 2303, 2333
Bse118I RCCGGY 1 cut(s) 826
Bse1I ACTGG 3 cut(s) 148, 337, 2451
Bse3DI GCAATG 1 cut(s) 2760
Bse8I GATNNNNATC 2 cut(s) 510, 2748
BseBI CCWGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
BseJI GATNNNNATC 2 cut(s) 510, 2748
BseMI GCAATG 1 cut(s) 2760
BseMII CTCAG 7 cut(s) 131, 764, 1080, 1863, 2145, 2498, 2567
BseNI ACTGG 3 cut(s) 148, 337, 2451
BseRI GAGGAG 9 cut(s) 160, 167, 488, 491, 646, 1202, 1493, 2324, 2918
BseSI GKGCMC 2 cut(s) 363, 834
BseX3I CGGCCG 1 cut(s) 319
BseYI CCCAGC 3 cut(s) 311, 1196, 2093
BsgI GTGCAG 3 cut(s) 1797, 1956, 3078
Bsh1236I CGCG 3 cut(s) 450, 456, 716
Bsh1285I CGRYCG 1 cut(s) 322
BshNI GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
BsiEI CGRYCG 1 cut(s) 322
BsiHKCI CYCGRG 4 cut(s) 272, 464, 628, 2235
BsiSI CCGG 3 cut(s) 386, 827, 938
BslFI GGGAC 4 cut(s) 242, 1506, 2637, 2911
BsmAI GTCTC 4 cut(s) 774, 911, 933, 1483
BsmFI GGGAC 4 cut(s) 242, 1506, 2637, 2911
BsmI GAATGC 3 cut(s) 1579, 1883, 2223
Bso31I GGTCTC 1 cut(s) 933
BsoBI CYCGRG 4 cut(s) 272, 464, 628, 2235
Bsp119I TTCGAA 2 cut(s) 531, 689
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 318, 363, 834
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
Bsp19I CCATGG 3 cut(s) 923, 1674, 1990
Bsp68I TCGCGA 1 cut(s) 716
BspCNI CTCAG 7 cut(s) 130, 763, 1081, 1864, 2146, 2499, 2566
BspFNI CGCG 3 cut(s) 450, 456, 716
BspHI TCATGA 1 cut(s) 2746
BspMAI CTGCAG 1 cut(s) 2944
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 2 cut(s) 1640, 2744
BspQI GCTCTTC 1 cut(s) 1946
BspT104I TTCGAA 2 cut(s) 531, 689
BspT107I GGYRCC 5 cut(s) 239, 326, 829, 1047, 2692
BspTI CTTAAG 2 cut(s) 1061, 1124
BspTNI GGTCTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 2760
BsrFI RCCGGY 1 cut(s) 826
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 3 cut(s) 148, 337, 2451
BssAI RCCGGY 1 cut(s) 826
BssMI GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
BssSI CACGAG 2 cut(s) 2112, 2517
BssT1I CCWWGG 5 cut(s) 923, 1674, 1990, 2395, 2415
Bst2BI CACGAG 2 cut(s) 2112, 2517
Bst2UI CCWGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
Bst4CI ACNGT 6 cut(s) 742, 979, 1030, 1936, 2466, 3078
BstAFI CTTAAG 2 cut(s) 1061, 1124
BstAPI GCANNNNNTGC 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 735
BstBAI YACGTR 1 cut(s) 368
BstBI TTCGAA 2 cut(s) 531, 689
BstC8I GCNNGC 9 cut(s) 363, 1365, 1470, 1545, 1623, 2091, 2106, 2169, 2574
BstDSI CCRYGG 6 cut(s) 322, 448, 923, 1674, 1990, 2985
BstFNI CGCG 3 cut(s) 450, 456, 716
BstH2I RGCGCY 4 cut(s) 127, 417, 2344, 2846
BstHHI GCGC 5 cut(s) 126, 376, 416, 2343, 2845
BstKTI GATC 5 cut(s) 702, 1060, 1635, 2746, 2752
BstMAI GTCTC 4 cut(s) 774, 911, 933, 1483
BstMBI GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
BstMCI CGRYCG 1 cut(s) 322
BstNI CCWGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
BstNSI RCATGY 2 cut(s) 875, 1281
BstPAI GACNNNNGTC 1 cut(s) 202
BstSCI CCNGG 6 cut(s) 344, 436, 1159, 1178, 1907, 2537
BstSFI CTRYAG 2 cut(s) 957, 2940
BstSLI GKGCMC 2 cut(s) 363, 834
BstUI CGCG 3 cut(s) 450, 456, 716
BstV2I GAAGAC 1 cut(s) 2717
BstXI CCANNNNNNTGG 1 cut(s) 1164
BstZI CGGCCG 1 cut(s) 319
BtgI CCRYGG 6 cut(s) 322, 448, 923, 1674, 1990, 2985
BtsI GCAGTG 2 cut(s) 2443, 2838
BtsIMutI CAGTG 4 cut(s) 330, 2443, 2462, 2838
BtuMI TCGCGA 1 cut(s) 716
BveI ACCTGC 1 cut(s) 390
Cac8I GCNNGC 9 cut(s) 363, 1365, 1470, 1545, 1623, 2091, 2106, 2169, 2574
CaiI CAGNNNCTG 1 cut(s) 1784
CciI TCATGA 1 cut(s) 2746
CfoI GCGC 5 cut(s) 126, 376, 416, 2343, 2845
Cfr10I RCCGGY 1 cut(s) 826
Cfr13I GGNCC 8 cut(s) 348, 359, 360, 886, 1036, 1585, 1911, 2898
Cfr42I CCGCGG 1 cut(s) 451
CseI GACGC 2 cut(s) 462, 2667
CsiI ACCWGGT 1 cut(s) 344
CspCI CAANNNNNGTGG 2 cut(s) 2967, 3002
DpnI GATC 5 cut(s) 701, 1059, 1634, 2745, 2751
DpnII GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
DraI TTTAAA 1 cut(s) 2179
DrdI GACNNNNNNGTC 1 cut(s) 925
DriI GACNNNNNGTC 1 cut(s) 787
DseDI GACNNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 4 cut(s) 319, 396, 445, 2535
EagI CGGCCG 1 cut(s) 319
Eam1105I GACNNNNNGTC 1 cut(s) 787
EciI GGCGGA 1 cut(s) 578
EclXI CGGCCG 1 cut(s) 319
Eco130I CCWWGG 5 cut(s) 923, 1674, 1990, 2395, 2415
Eco147I AGGCCT 1 cut(s) 2423
Eco24I GRGCYC 2 cut(s) 318, 363
Eco31I GGTCTC 1 cut(s) 933
Eco32I GATATC 2 cut(s) 355, 2623
Eco47I GGWCC 5 cut(s) 348, 886, 1036, 1585, 2898
Eco47III AGCGCT 1 cut(s) 2342
Eco52I CGGCCG 1 cut(s) 319
Eco57I CTGAAG 3 cut(s) 743, 1782, 2073
Eco72I CACGTG 1 cut(s) 368
Eco88I CYCGRG 4 cut(s) 272, 464, 628, 2235
EcoO109I RGGNCCY 1 cut(s) 1585
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 6 cut(s) 344, 436, 1159, 1178, 1907, 2537
EcoRV GATATC 2 cut(s) 355, 2623
EcoT14I CCWWGG 5 cut(s) 923, 1674, 1990, 2395, 2415
EcoT22I ATGCAT 1 cut(s) 2936
EcoT38I GRGCYC 2 cut(s) 318, 363
ErhI CCWWGG 5 cut(s) 923, 1674, 1990, 2395, 2415
FalI AAGNNNNNCTT 4 cut(s) 1035, 1067, 2907, 2939
FaqI GGGAC 4 cut(s) 242, 1506, 2637, 2911
FauI CCCGC 5 cut(s) 259, 275, 370, 441, 449
FauNDI CATATG 1 cut(s) 1958
FbaI TGATCA 1 cut(s) 2743
FokI GGATG 9 cut(s) 1176, 1274, 1372, 1496, 1762, 2105, 2111, 2278, 2738
FriOI GRGCYC 2 cut(s) 318, 363
FspBI CTAG 7 cut(s) 1080, 1113, 1215, 1998, 2384, 2811, 2840
GlaI GCGC 5 cut(s) 125, 375, 415, 2342, 2844
GsaI CCCAGC 3 cut(s) 315, 1200, 2097
GsuI CTGGAG 3 cut(s) 131, 1205, 2434
HaeII RGCGCY 4 cut(s) 127, 417, 2344, 2846
HapII CCGG 3 cut(s) 386, 827, 938
HgaI GACGC 2 cut(s) 462, 2667
HhaI GCGC 5 cut(s) 126, 376, 416, 2343, 2845
Hin6I GCGC 5 cut(s) 124, 374, 414, 2341, 2843
HinP1I GCGC 5 cut(s) 124, 374, 414, 2341, 2843
HincII GTYRAC 2 cut(s) 207, 2803
HindII GTYRAC 2 cut(s) 207, 2803
HindIII AAGCTT 1 cut(s) 2130
HpaII CCGG 3 cut(s) 386, 827, 938
HphI GGTGA 6 cut(s) 148, 331, 974, 1360, 2044, 2969
Hpy166II GTNNAC 4 cut(s) 207, 738, 1036, 2803
Hpy8I GTNNAC 4 cut(s) 207, 738, 1036, 2803
Hpy99I CGWCG 1 cut(s) 793
HpyCH4III ACNGT 6 cut(s) 742, 979, 1030, 1936, 2466, 3078
HpyCH4IV ACGT 2 cut(s) 367, 1774
HpySE526I ACGT 2 cut(s) 367, 1774
HspAI GCGC 5 cut(s) 124, 374, 414, 2341, 2843
KpnI GGTACC 2 cut(s) 1051, 2696
Ksp22I TGATCA 1 cut(s) 2743
KspI CCGCGG 1 cut(s) 451
Kzo9I GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
LguI GCTCTTC 1 cut(s) 1946
MabI ACCWGGT 1 cut(s) 344
MaeI CTAG 7 cut(s) 1080, 1113, 1215, 1998, 2384, 2811, 2840
MaeII ACGT 2 cut(s) 367, 1774
MaeIII GTNAC 7 cut(s) 150, 874, 940, 1132, 1382, 2032, 2833
MalI GATC 5 cut(s) 701, 1059, 1634, 2745, 2751
MboI GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
MfeI CAATTG 2 cut(s) 1220, 2277
MhlI GDGCHC 3 cut(s) 318, 363, 834
MlsI TGGCCA 1 cut(s) 2537
MluNI TGGCCA 1 cut(s) 2537
MlyI GAGTC 4 cut(s) 161, 620, 712, 913
MmeI TCCRAC 4 cut(s) 189, 207, 220, 1629
Mox20I TGGCCA 1 cut(s) 2537
Mph1103I ATGCAT 1 cut(s) 2936
MroXI GAANNNNTTC 3 cut(s) 809, 1428, 2342
MscI TGGCCA 1 cut(s) 2537
MslI CAYNNNNRTG 2 cut(s) 1162, 1673
Msp20I TGGCCA 1 cut(s) 2537
MspA1I CMGCKG 2 cut(s) 450, 3062
MspCI CTTAAG 2 cut(s) 1061, 1124
MspI CCGG 3 cut(s) 386, 827, 938
MspR9I CCNGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
MssI GTTTAAAC 1 cut(s) 2179
MunI CAATTG 2 cut(s) 1220, 2277
Mva1269I GAATGC 3 cut(s) 1579, 1883, 2223
MvaI CCWGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
MvnI CGCG 3 cut(s) 450, 456, 716
NcoI CCATGG 3 cut(s) 923, 1674, 1990
NdeI CATATG 1 cut(s) 1958
NdeII GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 3 cut(s) 1382, 2032, 2833
NruI TCGCGA 1 cut(s) 716
NsiI ATGCAT 1 cut(s) 2936
NspI RCATGY 2 cut(s) 875, 1281
NspV TTCGAA 2 cut(s) 531, 689
PaeR7I CTCGAG 2 cut(s) 272, 628
PagI TCATGA 1 cut(s) 2746
PceI AGGCCT 1 cut(s) 2423
PciSI GCTCTTC 1 cut(s) 1946
PctI GAATGC 3 cut(s) 1579, 1883, 2223
PdmI GAANNNNTTC 3 cut(s) 809, 1428, 2342
PflMI CCANNNNNTGG 2 cut(s) 2852, 2954
PleI GAGTC 4 cut(s) 161, 620, 712, 913
PmaCI CACGTG 1 cut(s) 368
PmeI GTTTAAAC 1 cut(s) 2179
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 4 cut(s) 161, 620, 712, 913
Ppu21I YACGTR 1 cut(s) 368
PpuMI RGGWCCY 1 cut(s) 1585
PshAI GACNNNNGTC 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 2304
Psp5II RGGWCCY 1 cut(s) 1585
Psp6I CCWGG 6 cut(s) 344, 436, 1159, 1178, 1907, 2537
PspCI CACGTG 1 cut(s) 368
PspFI CCCAGC 3 cut(s) 311, 1196, 2093
PspGI CCWGG 6 cut(s) 344, 436, 1159, 1178, 1907, 2537
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 8 cut(s) 348, 359, 360, 886, 1036, 1585, 1911, 2898
PspPPI RGGWCCY 1 cut(s) 1585
PspXI VCTCGAGB 2 cut(s) 272, 628
PstI CTGCAG 1 cut(s) 2944
PstNI CAGNNNCTG 1 cut(s) 1784
PvuII CAGCTG 1 cut(s) 3062
RruI TCGCGA 1 cut(s) 716
RseI CAYNNNNRTG 2 cut(s) 1162, 1673
SacII CCGCGG 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 1946
Sau3AI GATC 5 cut(s) 699, 1057, 1632, 2743, 2749
Sau96I GGNCC 8 cut(s) 348, 359, 360, 886, 1036, 1585, 1911, 2898
SchI GAGTC 4 cut(s) 161, 620, 712, 913
ScrFI CCNGG 6 cut(s) 346, 438, 1161, 1180, 1909, 2539
SduI GDGCHC 3 cut(s) 318, 363, 834
SexAI ACCWGGT 1 cut(s) 344
SfcI CTRYAG 2 cut(s) 957, 2940
SfiI GGCCNNNNNGGCC 1 cut(s) 2420
Sfr274I CTCGAG 2 cut(s) 272, 628
Sfr303I CCGCGG 1 cut(s) 451
SfuI TTCGAA 2 cut(s) 531, 689
SgrBI CCGCGG 1 cut(s) 451
SinI GGWCC 5 cut(s) 348, 886, 1036, 1585, 2898
SlaI CTCGAG 2 cut(s) 272, 628
SmiMI CAYNNNNRTG 2 cut(s) 1162, 1673
SmlI CTYRAG 5 cut(s) 272, 628, 1061, 1124, 2732
SmoI CTYRAG 5 cut(s) 272, 628, 1061, 1124, 2732
SpeI ACTAGT 1 cut(s) 1079
SseBI AGGCCT 1 cut(s) 2423
SspMI CTAG 7 cut(s) 1080, 1113, 1215, 1998, 2384, 2811, 2840
StuI AGGCCT 1 cut(s) 2423
StyD4I CCNGG 6 cut(s) 344, 436, 1159, 1178, 1907, 2537
StyI CCWWGG 5 cut(s) 923, 1674, 1990, 2395, 2415
TaaI ACNGT 6 cut(s) 742, 979, 1030, 1936, 2466, 3078
TaiI ACGT 2 cut(s) 370, 1777
TaqI TCGA 9 cut(s) 90, 273, 531, 629, 689, 791, 813, 1334, 2584
TaqII GACCGA 1 cut(s) 2915
TatI WGTACW 4 cut(s) 678, 735, 2871, 2920
TauI GCSGC 4 cut(s) 240, 414, 450, 1175
TscAI CASTG 4 cut(s) 337, 2450, 2469, 2838
TseFI GTSAC 3 cut(s) 1382, 2032, 2833
Tsp45I GTSAC 3 cut(s) 1382, 2032, 2833
TspDTI ATGAA 8 cut(s) 121, 540, 1085, 1314, 1490, 1766, 2214, 2282
TspGWI ACGGA 3 cut(s) 719, 959, 2722
TspRI CASTG 4 cut(s) 337, 2450, 2469, 2838
Van91I CCANNNNNTGG 2 cut(s) 2852, 2954
Vha464I CTTAAG 2 cut(s) 1061, 1124
VpaK11BI GGWCC 5 cut(s) 348, 886, 1036, 1585, 2898
VspI ATTAAT 1 cut(s) 2304
XapI RAATTY 5 cut(s) 97, 527, 2160, 2186, 2879
XceI RCATGY 2 cut(s) 875, 1281
XhoI CTCGAG 2 cut(s) 272, 628
XmnI GAANNNNTTC 3 cut(s) 809, 1428, 2342
XspI CTAG 7 cut(s) 1080, 1113, 1215, 1998, 2384, 2811, 2840
Zsp2I ATGCAT 1 cut(s) 2936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.