Rmu_sc0002762.1_g000009

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002762.1
OG0000856
Physical Location & Seq
Forward (+)
48192 .. 49131
940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002762.1_g000009.1.cds

Sequence Viewer

Length: 882 bp
atgtgtccgaagaatgaggatgtgtggttagaggcatgcaggcttgtcagccccagcgaagccaaggtggttgttgctatgggagtgaagcatataccgaattcggtggacttgtggatgagggctgtggatttggagcatgataagtcgaataagaagaaggtgttgtggaaagctttggatcaaagtaatgaaaatcttcgttgcgttacgctgtggaaggcagtgatggatctctgtcatgaagatgacaaggatatgaaagttttgcttcatagggccgtggaggtttgtccgttagaggttcaattttggattgctcttgcgaggtcagaaagttatgaggctgccaagatgattcttaataatgctagagtgcatcttccgaaagagcgcgccatttgggttgaagtagccaagttggaagaagttagggggaatgtgtctaaggttgggaagattattgaaaggggtataaagcttttgcaggaacaagggttggtgaatttcagagaaacatggatgaaggaagctgaaaaggttgagcgtgctgggcatgtggcagtttgccaagcaatcattcaaaacagtgttggggttggtgttgaggaagaggataggaagaggacttggcttgctgatgcagaggagtacatgaagagtggatccatcgaaactgccagagcaatttatgcacatgcacttactgttttcttaaccaagaagagtgtatggcgcaaggcagcaatgcttgaaaagagccatgggaccaaggaatctcttgatgctttgcttcgtagagcagtgaagtacctaccacaggttgaattcttttggcttatggctgctaaggaaaactggcttgccggggataaattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

293

Amino Acids

33.53

Weight (kDa)

8.41

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 396
AclWI GGATC 4 cut(s) 189, 240, 660, 673
AcsI RAATTY 3 cut(s) 100, 505, 827
AfaI GTAC 2 cut(s) 653, 812
AfiI CCNNNNNNNGG 1 cut(s) 820
AgsI TTSAA 6 cut(s) 308, 410, 467, 584, 755, 827
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 3 cut(s) 176, 481, 533
AluI AGCT 3 cut(s) 176, 481, 533
AlwI GGATC 4 cut(s) 189, 240, 660, 673
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 3 cut(s) 347, 743, 845
ApoI RAATTY 3 cut(s) 100, 505, 827
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 3 cut(s) 396, 398, 738
AspS9I GGNCC 2 cut(s) 279, 768
AsuC2I CCSGG 1 cut(s) 868
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 1 cut(s) 768
BamHI GGATCC 1 cut(s) 665
BbvI GCAGC 3 cut(s) 334, 755, 832
BccI CCATC 2 cut(s) 223, 677
BceAI ACGGC 1 cut(s) 266
BcnI CCSGG 1 cut(s) 868
BfaI CTAG 1 cut(s) 372
BisI GCNGC 3 cut(s) 348, 744, 846
BlsI GCNGC 3 cut(s) 349, 745, 847
Bme1390I CCNGG 1 cut(s) 868
Bme18I GGWCC 1 cut(s) 768
BmgT120I GGNCC 2 cut(s) 279, 768
BmiI GGNNCC 2 cut(s) 667, 769
BmrFI CCNGG 1 cut(s) 868
BmsI GCATC 3 cut(s) 388, 631, 775
Bpu10I CCTNAGC 1 cut(s) 849
BpuMI CCSGG 1 cut(s) 868
BsaJI CCNNGG 5 cut(s) 63, 282, 763, 771, 867
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse1I ACTGG 1 cut(s) 863
Bse3DI GCAATG 1 cut(s) 753
BseDI CCNNGG 5 cut(s) 63, 282, 763, 771, 867
BseGI GGATG 3 cut(s) 25, 123, 528
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMI GCAATG 1 cut(s) 753
BseNI ACTGG 1 cut(s) 863
BsePI GCGCGC 1 cut(s) 394
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 3 cut(s) 334, 755, 832
BseYI CCCAGC 2 cut(s) 53, 551
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 867
BslFI GGGAC 1 cut(s) 781
BslI CCNNNNNNNGG 1 cut(s) 820
BsmFI GGGAC 1 cut(s) 781
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 181, 232, 665
Bsp19I CCATGG 1 cut(s) 763
BspANI GGCC 1 cut(s) 281
BspFNI CGCG 1 cut(s) 396
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 667, 769
BspPI GGATC 4 cut(s) 189, 240, 660, 673
BsrDI GCAATG 1 cut(s) 753
BsrI ACTGG 1 cut(s) 863
BssECI CCNNGG 5 cut(s) 63, 282, 763, 771, 867
BssHII GCGCGC 1 cut(s) 394
BssMI GATC 3 cut(s) 181, 232, 665
BssT1I CCWWGG 3 cut(s) 63, 763, 771
Bst4CI ACNGT 2 cut(s) 590, 709
Bst6I CTCTTC 4 cut(s) 606, 617, 653, 719
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 6 cut(s) 37, 41, 396, 549, 636, 864
BstDEI CTNAG 2 cut(s) 447, 849
BstDSI CCRYGG 2 cut(s) 282, 763
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 3 cut(s) 25, 123, 528
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 3 cut(s) 396, 398, 738
BstKTI GATC 3 cut(s) 184, 235, 668
BstMBI GATC 3 cut(s) 181, 232, 665
BstMWI GCNNNNNNNGC 2 cut(s) 553, 692
BstNSI RCATGY 3 cut(s) 39, 560, 701
BstSCI CCNGG 1 cut(s) 866
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 334, 755, 832
BstX2I RGATCY 2 cut(s) 232, 665
BstYI RGATCY 2 cut(s) 232, 665
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 282, 763
BtsCI GGATG 3 cut(s) 25, 123, 528
BtsI GCAGTG 2 cut(s) 231, 810
BtsIMutI CAGTG 3 cut(s) 231, 595, 810
Cac8I GCNNGC 6 cut(s) 37, 41, 396, 549, 636, 864
CciI TCATGA 1 cut(s) 241
CfoI GCGC 3 cut(s) 396, 398, 738
Cfr13I GGNCC 2 cut(s) 279, 768
Csp6I GTAC 2 cut(s) 652, 811
CviAII CATG 8 cut(s) 36, 140, 242, 519, 557, 655, 698, 764
CviQI GTAC 2 cut(s) 652, 811
DdeI CTNAG 2 cut(s) 447, 849
DpnI GATC 3 cut(s) 183, 234, 667
DpnII GATC 3 cut(s) 181, 232, 665
Eam1104I CTCTTC 4 cut(s) 606, 617, 653, 719
EarI CTCTTC 4 cut(s) 606, 617, 653, 719
Eco130I CCWWGG 3 cut(s) 63, 763, 771
Eco47I GGWCC 1 cut(s) 768
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoRI GAATTC 2 cut(s) 100, 827
EcoT14I CCWWGG 3 cut(s) 63, 763, 771
ErhI CCWWGG 3 cut(s) 63, 763, 771
FaeI CATG 8 cut(s) 39, 143, 245, 522, 560, 658, 701, 767
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 781
FatI CATG 8 cut(s) 35, 139, 241, 518, 556, 654, 697, 763
Fnu4HI GCNGC 3 cut(s) 348, 744, 846
FokI GGATG 3 cut(s) 32, 130, 535
Fsp4HI GCNGC 3 cut(s) 348, 744, 846
FspBI CTAG 1 cut(s) 372
GlaI GCGC 3 cut(s) 395, 397, 737
GluI GCNGC 3 cut(s) 348, 744, 846
GsaI CCCAGC 2 cut(s) 57, 555
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 867
HhaI GCGC 3 cut(s) 396, 398, 738
Hin1II CATG 8 cut(s) 39, 143, 245, 522, 560, 658, 701, 767
Hin6I GCGC 3 cut(s) 394, 396, 736
HinP1I GCGC 3 cut(s) 394, 396, 736
HindIII AAGCTT 2 cut(s) 174, 479
HinfI GANTC 2 cut(s) 358, 776
HpaII CCGG 1 cut(s) 867
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 9, 334, 387, 512
Hpy188III TCNNGA 2 cut(s) 242, 782
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 154, 214, 520
HpyCH4III ACNGT 2 cut(s) 590, 709
HpyCH4V TGCA 6 cut(s) 39, 379, 487, 644, 695, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 553, 692
HpyF3I CTNAG 2 cut(s) 447, 849
Hsp92II CATG 8 cut(s) 39, 143, 245, 522, 560, 658, 701, 767
HspAI GCGC 3 cut(s) 394, 396, 736
Kzo9I GATC 3 cut(s) 181, 232, 665
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 25, 67, 473, 537, 694, 806, 844
Lsp1109I GCAGC 3 cut(s) 334, 755, 832
LweI GCATC 3 cut(s) 388, 631, 775
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 183, 234, 667
MboI GATC 3 cut(s) 181, 232, 665
MflI RGATCY 2 cut(s) 232, 665
MluCI AATT 6 cut(s) 100, 308, 505, 687, 827, 875
MmeI TCCRAC 1 cut(s) 402
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 2 cut(s) 363, 716
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 1 cut(s) 867
MspR9I CCNGG 1 cut(s) 868
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 553, 692
NciI CCSGG 1 cut(s) 868
NcoI CCATGG 1 cut(s) 763
NdeII GATC 3 cut(s) 181, 232, 665
NlaIII CATG 8 cut(s) 39, 143, 245, 522, 560, 658, 701, 767
NlaIV GGNNCC 2 cut(s) 667, 769
NspI RCATGY 3 cut(s) 39, 560, 701
PaeI GCATGC 1 cut(s) 39
PagI TCATGA 1 cut(s) 241
PauI GCGCGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 358, 776
PkrI GCNGC 3 cut(s) 349, 745, 847
PspFI CCCAGC 2 cut(s) 53, 551
PspN4I GGNNCC 2 cut(s) 667, 769
PspPI GGNCC 2 cut(s) 279, 768
PsuI RGATCY 2 cut(s) 232, 665
PteI GCGCGC 1 cut(s) 394
RsaI GTAC 2 cut(s) 653, 812
RsaNI GTAC 2 cut(s) 652, 811
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 363, 716
SatI GCNGC 3 cut(s) 348, 744, 846
Sau3AI GATC 3 cut(s) 181, 232, 665
Sau96I GGNCC 2 cut(s) 279, 768
ScrFI CCNGG 1 cut(s) 868
SfaNI GCATC 3 cut(s) 388, 631, 775
SinI GGWCC 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 246
SphI GCATGC 1 cut(s) 39
Sse9I AATT 6 cut(s) 100, 308, 505, 687, 827, 875
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 1 cut(s) 866
StyI CCWWGG 3 cut(s) 63, 763, 771
TaaI ACNGT 2 cut(s) 590, 709
TaqI TCGA 2 cut(s) 149, 672
TasI AATT 6 cut(s) 100, 308, 505, 687, 827, 875
TatI WGTACW 1 cut(s) 651
TfiI GAWTC 2 cut(s) 358, 776
Tru1I TTAA 2 cut(s) 363, 716
Tru9I TTAA 2 cut(s) 363, 716
TscAI CASTG 3 cut(s) 231, 595, 810
TseI GCWGC 3 cut(s) 347, 743, 845
TspDTI ATGAA 6 cut(s) 207, 258, 263, 275, 539, 671
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 3 cut(s) 231, 595, 810
VpaK11BI GGWCC 1 cut(s) 768
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 3 cut(s) 100, 505, 827
XceI RCATGY 3 cut(s) 39, 560, 701
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.