Rmu_sc0002032.1_g000003

PRP1 splicing factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002032.1
OG0000856
Physical Location & Seq
Forward (+)
8770 .. 9183
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002032.1_g000003.1.cds

Sequence Viewer

Length: 414 bp
atgggagagcttaccagaaatggggattattcgtggaagaataggaagaagaggaagttcgaaagctttgttccggtgccggataccattttcgagaaggccaggctggagaggcagcatgttgcgtctgtagacccaatgagtacagatttgactgcattgggcaagggaaagggcacagtgatgaagctgaaattggatagactttcggattcggtttcggggctcaccagtgtggatccaaaggggtatcttagtggtcttttgagtatgaatatgaacgttagtactagttctgatgtttcggatataaagaagattagacagttgtataggagtgtaagagagtcaatgacaggacccgccccagatttcaccctgaaattcgaagaggccctgcggggcccaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

137

Amino Acids

15.27

Weight (kDa)

9.65

Isoelectric Point (pI)

21.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 132
AciI CCGC 2 cut(s) 363, 400
AclI AACGTT 1 cut(s) 282
AclWI GGATC 2 cut(s) 233, 246
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 2 cut(s) 145, 289
AfiI CCNNNNNNNGG 1 cut(s) 21
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 3 cut(s) 10, 66, 190
AluI AGCT 3 cut(s) 10, 66, 190
AlwI GGATC 2 cut(s) 233, 246
AoxI GGCC 3 cut(s) 99, 393, 403
ApaI GGGCCC 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 383
AspS9I GGNCC 4 cut(s) 359, 394, 403, 404
AsuHPI GGTGA 2 cut(s) 220, 367
AsuII TTCGAA 2 cut(s) 60, 387
AvaII GGWCC 1 cut(s) 359
BaeGI GKGCMC 2 cut(s) 179, 407
BamHI GGATCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 2 cut(s) 228, 407
BbvI GCAGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 76
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 4 cut(s) 359, 394, 403, 404
BmiI GGNNCC 5 cut(s) 78, 240, 361, 404, 405
BmrFI CCNGG 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 128
Bpu14I TTCGAA 2 cut(s) 60, 387
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 231
BseSI GKGCMC 2 cut(s) 179, 407
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 3 cut(s) 101, 395, 405
BshNI GGYRCC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 74, 80
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 3 cut(s) 101, 395, 405
Bsp119I TTCGAA 2 cut(s) 60, 387
Bsp120I GGGCCC 1 cut(s) 403
Bsp1286I GDGCHC 3 cut(s) 179, 228, 407
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 2 cut(s) 363, 400
BspANI GGCC 3 cut(s) 101, 395, 405
BspLI GGNNCC 5 cut(s) 78, 240, 361, 404, 405
BspPI GGATC 2 cut(s) 233, 246
BspT104I TTCGAA 2 cut(s) 60, 387
BspT107I GGYRCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 231
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 181, 327
Bst6I CTCTTC 2 cut(s) 44, 384
BstBI TTCGAA 2 cut(s) 60, 387
BstDEI CTNAG 2 cut(s) 254, 411
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 2 cut(s) 179, 407
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 3 cut(s) 101, 395, 405
BtsIMutI CAGTG 2 cut(s) 186, 238
Cfr13I GGNCC 4 cut(s) 359, 394, 403, 404
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 144, 288
CviAII CATG 1 cut(s) 119
CviJI RGCY 8 cut(s) 10, 66, 101, 106, 190, 226, 395, 405
CviKI_1 RGCY 8 cut(s) 10, 66, 101, 106, 190, 226, 395, 405
CviQI GTAC 2 cut(s) 144, 288
DdeI CTNAG 2 cut(s) 254, 411
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 44, 384
EarI CTCTTC 2 cut(s) 44, 384
Eco24I GRGCYC 2 cut(s) 228, 407
Eco47I GGWCC 1 cut(s) 359
EcoO109I RGGNCCY 3 cut(s) 359, 394, 403
EcoRII CCWGG 1 cut(s) 101
EcoT38I GRGCYC 2 cut(s) 228, 407
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 120, 272, 278, 311, 333
FatI CATG 1 cut(s) 118
FauI CCCGC 2 cut(s) 370, 393
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 116
FriOI GRGCYC 2 cut(s) 228, 407
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 291
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 3 cut(s) 101, 395, 405
HapII CCGG 2 cut(s) 74, 80
HgaI GACGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 2 cut(s) 212, 347
HpaII CCGG 2 cut(s) 74, 80
HphI GGTGA 2 cut(s) 220, 367
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 211, 298, 307
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 181, 327
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 254, 411
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 291
MaeII ACGT 1 cut(s) 282
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 5 cut(s) 49, 58, 61, 328, 401
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 3 cut(s) 179, 228, 407
MluCI AATT 2 cut(s) 194, 383
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 3 cut(s) 45, 105, 385
MslI CAYNNNNRTG 2 cut(s) 182, 233
MspI CCGG 2 cut(s) 74, 80
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 5 cut(s) 78, 240, 361, 404, 405
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 2 cut(s) 60, 387
OliI CACNNNNGTG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 359
Psp1406I AACGTT 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 5 cut(s) 78, 240, 361, 404, 405
PspOMI GGGCCC 1 cut(s) 403
PspPI GGNCC 4 cut(s) 359, 394, 403, 404
PspPPI RGGWCCY 1 cut(s) 359
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 2 cut(s) 145, 289
RsaNI GTAC 2 cut(s) 144, 288
RseI CAYNNNNRTG 2 cut(s) 182, 233
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 4 cut(s) 359, 394, 403, 404
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 3 cut(s) 179, 228, 407
SetI ASST 5 cut(s) 12, 68, 192, 285, 412
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 2 cut(s) 60, 387
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 182, 233
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 2 cut(s) 194, 383
SsiI CCGC 2 cut(s) 363, 400
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 181, 327
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 60, 93, 387
TasI AATT 2 cut(s) 194, 383
TatI WGTACW 2 cut(s) 143, 287
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 2 cut(s) 186, 238
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 200, 287, 293
TspRI CASTG 2 cut(s) 186, 238
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.