RchiOBHm_Chr3g0494631

PRP1 splicing factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000856
Physical Location & Seq
Forward (+)
43468776 .. 43470153
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45715

Sequence Viewer

Length: 960 bp
ATGGAGGAAAAGTCGAATGCTGAGAATTTGAAGAAGATCCCGGTGGAGTTGAAGAGGAAGCTGAGTTCCGTGAAGAGGAGGAAGTTCGAGAGCTTTGTTCCTGTGCCGGATACCATTTTCGAGAAGGCCAGGCTGGAGAGGCAGCATGTTGCGTCTGTAGACCCAATGAGTATAGATTTGACTGCACTGGGCGAGGGAAAGGGCATAGTGATGAAGCTGAAATTGGATAGGCTTTCGGATTTGGTTTCAGGGCTCACCAGTGTGGATCGAAAGGGGTATCTTAGTGGTCTTTTGAGTATGAATATGAACATTAGTACTAGTTCTGATGTTTCGGATATAAAGAAGACTAGACAGTTGTATAGGAGTGTAAGAGAGTCGAAGCATAAGGACCCGTGTGGTTGGATTGCAGCTGCAAGGTTGGAGGAGATGGTGGGGAAGTTAAAGGAAGCCAGGGAGATCATTAAGAAAGGGTCTGTGGATTTGGAGCAAGATAAGTCGAATAAGAAGAAGGTGCTGTGGAAAGCTTTGGATCAAAATGACAAGGATATGAGAGTTTTGCTTCATAGGGCCGTGCAGGTTTGTCCGTTGGAGGTTCAATTTTGGATTGCTCTTGCGAGGTCAGAAAGTTATGAGGCTGCCAAGATGATTCTTAATAATGCTAGAGTGCATCTTCCGAAAGAGCGCGCCATTTGGGTTGAAGCAGCCAAGTTGGAAGAATTTAGGGGGAATGTGTCTAAGGTTGGGAAGATTATTGAAAGGGGTATAAAGCTTTTGCAGAAACAAGGGTTGGTGAATTTCAGAGAAACATGGATGAAGGAAGCTGAAAAGGTTGAGCGTGCTGGGCATGTGGTAATTTGCCAAGCAATCATTCAAAACAGTGTTGGGGTTGGCGTTGAAGAAGAGGATAGGAAGAGGACTTGGCTTGCGGATGCAGAGGAGTACATGGAGTGGTTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

319

Amino Acids

36.52

Weight (kDa)

9.39

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAT_PRP39_C PF23241 177 - 259 4.3e-06 PRP39 C-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 565
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 684
AciI CCGC 1 cut(s) 926
AclWI GGATC 3 cut(s) 31, 273, 537
AcsI RAATTY 3 cut(s) 25, 716, 793
AfaI GTAC 2 cut(s) 316, 941
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 7 cut(s) 31, 52, 596, 698, 755, 872, 896
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 2 cut(s) 128, 449
AjuI GAANNNNNNNTTGG 6 cut(s) 206, 238, 770, 802, 852, 884
AleI CACNNNNGTG 1 cut(s) 260
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
AluBI AGCT 7 cut(s) 61, 93, 217, 410, 524, 769, 821
AluI AGCT 7 cut(s) 61, 93, 217, 410, 524, 769, 821
AlwI GGATC 3 cut(s) 31, 273, 537
AoxI GGCC 2 cut(s) 126, 567
ApeKI GCWGC 5 cut(s) 142, 407, 410, 635, 701
ApoI RAATTY 3 cut(s) 25, 716, 793
AspLEI GCGC 2 cut(s) 684, 686
AspS9I GGNCC 2 cut(s) 388, 567
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 247, 802
AvaII GGWCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 5 cut(s) 154, 397, 419, 622, 713
BccI CCATC 1 cut(s) 421
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 2 cut(s) 130, 451
BciVI GTATCC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 41
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 3 cut(s) 318, 348, 660
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 565
BfuI GTATCC 1 cut(s) 103
BisI GCNGC 5 cut(s) 143, 408, 411, 636, 702
BlsI GCNGC 5 cut(s) 144, 409, 412, 637, 703
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 41, 130, 451
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 388, 567
BmiI GGNNCC 2 cut(s) 390, 953
BmrFI CCNGG 3 cut(s) 41, 130, 451
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 2 cut(s) 676, 919
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 450
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 192, 258
BseBI CCWGG 2 cut(s) 130, 451
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 2 cut(s) 816, 934
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 12, 53
BseNI ACTGG 2 cut(s) 192, 258
BsePI GCGCGC 1 cut(s) 682
BseRI GAGGAG 3 cut(s) 91, 437, 950
BseXI GCAGC 5 cut(s) 154, 397, 419, 622, 713
BseYI CCCAGC 1 cut(s) 839
BsgI GTGCAG 2 cut(s) 168, 593
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 2 cut(s) 128, 569
BsiSI CCGG 2 cut(s) 41, 107
BslI CCNNNNNNNGG 1 cut(s) 75
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 2 cut(s) 128, 569
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 4 cut(s) 36, 265, 456, 529
BspACI CCGC 1 cut(s) 926
BspANI GGCC 2 cut(s) 128, 569
BspCNI CTCAG 2 cut(s) 13, 54
BspFNI CGCG 1 cut(s) 684
BspLI GGNNCC 2 cut(s) 390, 953
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 3 cut(s) 31, 273, 537
BsrI ACTGG 2 cut(s) 192, 258
BssECI CCNNGG 1 cut(s) 450
BssHII GCGCGC 1 cut(s) 682
BssMI GATC 4 cut(s) 36, 265, 456, 529
Bst2UI CCWGG 2 cut(s) 130, 451
Bst4CI ACNGT 2 cut(s) 354, 878
Bst6I CTCTTC 4 cut(s) 47, 68, 894, 905
BstC8I GCNNGC 3 cut(s) 684, 837, 924
BstDEI CTNAG 4 cut(s) 21, 62, 281, 735
BstF5I GGATG 2 cut(s) 816, 934
BstFNI CGCG 1 cut(s) 684
BstHHI GCGC 2 cut(s) 684, 686
BstKTI GATC 4 cut(s) 39, 268, 459, 532
BstMBI GATC 4 cut(s) 36, 265, 456, 529
BstMWI GCNNNNNNNGC 2 cut(s) 139, 841
BstNI CCWGG 2 cut(s) 130, 451
BstNSI RCATGY 2 cut(s) 149, 848
BstSCI CCNGG 3 cut(s) 39, 128, 449
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 5 cut(s) 154, 397, 419, 622, 713
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 128, 569
BtsCI GGATG 2 cut(s) 816, 934
BtsIMutI CAGTG 3 cut(s) 185, 265, 883
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 3 cut(s) 684, 837, 924
CfoI GCGC 2 cut(s) 684, 686
Cfr13I GGNCC 2 cut(s) 388, 567
CseI GACGC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 315, 940
CviAII CATG 4 cut(s) 146, 807, 845, 943
CviQI GTAC 2 cut(s) 315, 940
DdeI CTNAG 4 cut(s) 21, 62, 281, 735
DpnI GATC 4 cut(s) 38, 267, 458, 531
DpnII GATC 4 cut(s) 36, 265, 456, 529
Eam1104I CTCTTC 4 cut(s) 47, 68, 894, 905
EarI CTCTTC 4 cut(s) 47, 68, 894, 905
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 2 cut(s) 128, 449
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 4 cut(s) 149, 810, 848, 946
FatI CATG 4 cut(s) 145, 806, 844, 942
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 143, 408, 411, 636, 702
FokI GGATG 2 cut(s) 823, 941
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 5 cut(s) 143, 408, 411, 636, 702
FspBI CTAG 3 cut(s) 318, 348, 660
GlaI GCGC 2 cut(s) 683, 685
GluI GCNGC 5 cut(s) 143, 408, 411, 636, 702
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 2 cut(s) 128, 569
HapII CCGG 2 cut(s) 41, 107
HgaI GACGC 1 cut(s) 141
HhaI GCGC 2 cut(s) 684, 686
Hin1II CATG 4 cut(s) 149, 810, 848, 946
Hin6I GCGC 2 cut(s) 682, 684
HinP1I GCGC 2 cut(s) 682, 684
HindIII AAGCTT 2 cut(s) 522, 767
HinfI GANTC 2 cut(s) 374, 646
HpaII CCGG 2 cut(s) 41, 107
HphI GGTGA 2 cut(s) 247, 802
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 6 cut(s) 238, 325, 334, 622, 675, 800
Hpy188III TCNNGA 2 cut(s) 88, 121
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 118, 502, 808
HpyCH4III ACNGT 2 cut(s) 354, 878
HpyCH4V TGCA 7 cut(s) 185, 407, 413, 574, 667, 775, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 841
HpyF3I CTNAG 4 cut(s) 21, 62, 281, 735
Hsp92II CATG 4 cut(s) 149, 810, 848, 946
HspAI GCGC 2 cut(s) 682, 684
Kzo9I GATC 4 cut(s) 36, 265, 456, 529
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 5 cut(s) 154, 397, 419, 622, 713
LweI GCATC 2 cut(s) 676, 919
MaeI CTAG 3 cut(s) 318, 348, 660
MalI GATC 4 cut(s) 38, 267, 458, 531
MboI GATC 4 cut(s) 36, 265, 456, 529
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 6 cut(s) 25, 221, 596, 716, 793, 852
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 4 cut(s) 380, 399, 567, 690
MseI TTAA 3 cut(s) 440, 462, 651
MslI CAYNNNNRTG 2 cut(s) 209, 260
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 41, 107
MspR9I CCNGG 3 cut(s) 41, 130, 451
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 2 cut(s) 130, 451
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 2 cut(s) 139, 841
NciI CCSGG 1 cut(s) 41
NdeII GATC 4 cut(s) 36, 265, 456, 529
NlaIII CATG 4 cut(s) 149, 810, 848, 946
NlaIV GGNNCC 2 cut(s) 390, 953
NspI RCATGY 2 cut(s) 149, 848
OliI CACNNNNGTG 1 cut(s) 260
PauI GCGCGC 1 cut(s) 682
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 646
PkrI GCNGC 5 cut(s) 144, 409, 412, 637, 703
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 128, 449
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 2 cut(s) 128, 449
PspN4I GGNNCC 2 cut(s) 390, 953
PspPI GGNCC 2 cut(s) 388, 567
PspPPI RGGWCCY 1 cut(s) 388
PsuI RGATCY 1 cut(s) 36
PteI GCGCGC 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 316, 941
RsaNI GTAC 2 cut(s) 315, 940
RseI CAYNNNNRTG 2 cut(s) 209, 260
SaqAI TTAA 3 cut(s) 440, 462, 651
SatI GCNGC 5 cut(s) 143, 408, 411, 636, 702
Sau3AI GATC 4 cut(s) 36, 265, 456, 529
Sau96I GGNCC 2 cut(s) 388, 567
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 3 cut(s) 41, 130, 451
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 2 cut(s) 676, 919
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 2 cut(s) 209, 260
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 6 cut(s) 25, 221, 596, 716, 793, 852
SsiI CCGC 1 cut(s) 926
SspMI CTAG 3 cut(s) 318, 348, 660
StyD4I CCNGG 3 cut(s) 39, 128, 449
TaaI ACNGT 2 cut(s) 354, 878
TaqI TCGA 6 cut(s) 14, 87, 120, 268, 377, 497
TasI AATT 6 cut(s) 25, 221, 596, 716, 793, 852
TatI WGTACW 2 cut(s) 314, 939
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 3 cut(s) 440, 462, 651
Tru9I TTAA 3 cut(s) 440, 462, 651
TscAI CASTG 3 cut(s) 192, 265, 883
TseI GCWGC 5 cut(s) 142, 407, 410, 635, 701
TspDTI ATGAA 5 cut(s) 227, 314, 320, 551, 827
TspGWI ACGGA 2 cut(s) 58, 573
TspRI CASTG 3 cut(s) 192, 265, 883
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 3 cut(s) 25, 716, 793
XceI RCATGY 2 cut(s) 149, 848
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 318, 348, 660
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.