Rmu_sc0002032.1_g000005

pre-mRNA-processing factor 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002032.1
OG0000856
Physical Location & Seq
Forward (+)
14497 .. 15800
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002032.1_g000005.1.cds

Sequence Viewer

Length: 1026 bp
atgtgtccgaagaatgaggatgtgtggttagaggcatgcaggcttgtcagccccagcgaagccaaggtggttgttgctatgggagtgaagcatataccgaattcggtggacttgtggatgagggctgtggatttggagcatgataagtcgaataagaagaaggtgttgtggaaagctttggatcaaagtaatgaaaatctttgttgcgttaggctgtggaaggtagtgatggatctctgtcatgaagatgacaaggatatgaaagttttgcttcatagggccgtggaggtttgtccattggaggttcaattttgtattgctcttgcgagagtgcatctttcgaaagagcgcgccatttgggttgaagcagcaaagttggaagaagttagggggaatgtgtctaaggttgggaagattattgaaaggggtataaagcttttgcaggaacaagggttggtgaatttcagagaaacatggatgaaggaagctgaaaaggttgagcgtgctgggcatgtggcagtttgccaagcaatcattcaaaacagtgttgtgaccaaggaatctcttcatgctttgcttcgtagagcagtgaagtacctaccacaggttgaattcttttggcttatggctgctaaggagaactggcttgccggggatgtgaatgctgcccgtatgatccttgaagaagcttctaaatcccttcccaattctgaagaaattatgattgttgcatttaagttagagtttgaaaatcatgagcaagagagagctaaaatgattcttgacaaaacccgagcaagggtagacagtggaagactagaggaacgcctcaatgattttcaaaaagccaagaccgcgtatgaatcgggtctcaagcactgctccaattgtataccgctctggctttctctagaaaatcttgaagagaagaggaatggtctgagtaaagctcgtgcagttctcacaacagccagggagaagaactctcgtaatcctgaattgtggattgctgctgttcaagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048522 GO:0050681 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8

Protein Analysis

341

Amino Acids

39.02

Weight (kDa)

8.25

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 898
AccI GTMKAC 2 cut(s) 804, 892
AccII CGCG 2 cut(s) 351, 857
AciI CCGC 2 cut(s) 855, 896
AclWI GGATC 3 cut(s) 189, 240, 670
AcsI RAATTY 3 cut(s) 100, 460, 611
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 3 cut(s) 604, 798, 799
AjnI CCWGG 1 cut(s) 971
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 7 cut(s) 176, 436, 488, 689, 770, 950, 1022
AluI AGCT 7 cut(s) 176, 436, 488, 689, 770, 950, 1022
Alw26I GTCTC 1 cut(s) 875
AlwI GGATC 3 cut(s) 189, 240, 670
Ama87I CYCGRG 1 cut(s) 792
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 4 cut(s) 368, 629, 665, 1010
ApoI RAATTY 3 cut(s) 100, 460, 611
Asp700I GAANNNNTTC 1 cut(s) 564
AspLEI GCGC 2 cut(s) 351, 353
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 1 cut(s) 469
AsuII TTCGAA 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 792
BauI CACGAG 1 cut(s) 951
BbsI GAAGAC 1 cut(s) 820
BbvI GCAGC 4 cut(s) 380, 616, 652, 997
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 973
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 2 cut(s) 818, 911
BisI GCNGC 4 cut(s) 369, 630, 666, 1011
BlsI GCNGC 4 cut(s) 370, 631, 667, 1012
Bme1390I CCNGG 2 cut(s) 652, 973
BmeT110I CYCGRG 1 cut(s) 792
BmgT120I GGNCC 1 cut(s) 279
BmrFI CCNGG 2 cut(s) 652, 973
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 820
BplI GAGNNNNNCTC 4 cut(s) 934, 966, 968, 1000
Bpu10I CCTNAGC 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 857
BpuMI CCSGG 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 5 cut(s) 63, 282, 555, 651, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 798, 799
Bse1I ACTGG 1 cut(s) 647
BseBI CCWGG 1 cut(s) 973
BseDI CCNNGG 5 cut(s) 63, 282, 555, 651, 972
BseGI GGATG 4 cut(s) 25, 123, 483, 661
BseLI CCNNNNNNNGG 3 cut(s) 604, 798, 799
BseMII CTCAG 1 cut(s) 932
BseNI ACTGG 1 cut(s) 647
BsePI GCGCGC 1 cut(s) 349
BseXI GCAGC 4 cut(s) 380, 616, 652, 997
BseYI CCCAGC 2 cut(s) 53, 506
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 2 cut(s) 351, 857
BshFI GGCC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 792
BsiSI CCGG 1 cut(s) 651
BslI CCNNNNNNNGG 3 cut(s) 604, 798, 799
BsmAI GTCTC 1 cut(s) 875
BsmI GAATGC 1 cut(s) 667
BsnI GGCC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 875
BsoBI CYCGRG 1 cut(s) 792
Bsp119I TTCGAA 1 cut(s) 341
Bsp143I GATC 3 cut(s) 181, 232, 675
BspACI CCGC 2 cut(s) 855, 896
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 933
BspFNI CGCG 2 cut(s) 351, 857
BspHI TCATGA 2 cut(s) 241, 754
BspPI GGATC 3 cut(s) 189, 240, 670
BspT104I TTCGAA 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 875
BsrBI CCGCTC 1 cut(s) 898
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 5 cut(s) 63, 282, 555, 651, 972
BssHII GCGCGC 1 cut(s) 349
BssMI GATC 3 cut(s) 181, 232, 675
BssNAI GTATAC 1 cut(s) 893
BssSI CACGAG 1 cut(s) 951
BssT1I CCWWGG 2 cut(s) 63, 555
Bst1107I GTATAC 1 cut(s) 893
Bst2BI CACGAG 1 cut(s) 951
Bst2UI CCWGG 1 cut(s) 973
Bst4CI ACNGT 2 cut(s) 545, 809
Bst6I CTCTTC 3 cut(s) 570, 918, 923
BstBI TTCGAA 1 cut(s) 341
BstC8I GCNNGC 5 cut(s) 37, 41, 351, 504, 648
BstDEI CTNAG 3 cut(s) 402, 633, 941
BstDSI CCRYGG 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 602
BstF5I GGATG 4 cut(s) 25, 123, 483, 661
BstFNI CGCG 2 cut(s) 351, 857
BstHHI GCGC 2 cut(s) 351, 353
BstKTI GATC 3 cut(s) 184, 235, 678
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 3 cut(s) 181, 232, 675
BstMWI GCNNNNNNNGC 3 cut(s) 508, 854, 1019
BstNI CCWGG 1 cut(s) 973
BstNSI RCATGY 2 cut(s) 39, 515
BstSCI CCNGG 2 cut(s) 650, 971
BstUI CGCG 2 cut(s) 351, 857
BstV1I GCAGC 4 cut(s) 380, 616, 652, 997
BstV2I GAAGAC 1 cut(s) 820
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZ17I GTATAC 1 cut(s) 893
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 4 cut(s) 25, 123, 483, 661
BtsI GCAGTG 2 cut(s) 594, 877
BtsIMutI CAGTG 4 cut(s) 550, 594, 814, 877
Cac8I GCNNGC 5 cut(s) 37, 41, 351, 504, 648
CciI TCATGA 2 cut(s) 241, 754
CfoI GCGC 2 cut(s) 351, 353
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 595
CviAII CATG 7 cut(s) 36, 140, 242, 474, 512, 569, 755
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 3 cut(s) 402, 633, 941
DpnI GATC 3 cut(s) 183, 234, 677
DpnII GATC 3 cut(s) 181, 232, 675
Eam1104I CTCTTC 3 cut(s) 570, 918, 923
EarI CTCTTC 3 cut(s) 570, 918, 923
Eco130I CCWWGG 2 cut(s) 63, 555
Eco31I GGTCTC 1 cut(s) 875
Eco57I CTGAAG 1 cut(s) 732
Eco88I CYCGRG 1 cut(s) 792
EcoNI CCTNNNNNAGG 1 cut(s) 602
EcoRI GAATTC 2 cut(s) 100, 611
EcoRII CCWGG 1 cut(s) 971
EcoT14I CCWWGG 2 cut(s) 63, 555
ErhI CCWWGG 2 cut(s) 63, 555
FaeI CATG 7 cut(s) 39, 143, 245, 477, 515, 572, 758
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 7 cut(s) 35, 139, 241, 473, 511, 568, 754
FblI GTMKAC 2 cut(s) 804, 892
Fnu4HI GCNGC 4 cut(s) 369, 630, 666, 1011
FokI GGATG 4 cut(s) 32, 130, 490, 668
Fsp4HI GCNGC 4 cut(s) 369, 630, 666, 1011
FspBI CTAG 2 cut(s) 818, 911
GlaI GCGC 2 cut(s) 350, 352
GluI GCNGC 4 cut(s) 369, 630, 666, 1011
GsaI CCCAGC 2 cut(s) 57, 510
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 651
HhaI GCGC 2 cut(s) 351, 353
Hin1II CATG 7 cut(s) 39, 143, 245, 477, 515, 572, 758
Hin6I GCGC 2 cut(s) 349, 351
HinP1I GCGC 2 cut(s) 349, 351
HindIII AAGCTT 4 cut(s) 174, 434, 687, 1020
HinfI GANTC 3 cut(s) 560, 778, 863
HpaII CCGG 1 cut(s) 651
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 3 cut(s) 109, 805, 893
Hpy188I TCNGA 4 cut(s) 9, 467, 712, 942
Hpy188III TCNNGA 6 cut(s) 242, 755, 782, 911, 920, 995
Hpy8I GTNNAC 3 cut(s) 109, 805, 893
HpyAV CCTTC 4 cut(s) 154, 214, 475, 710
HpyCH4III ACNGT 2 cut(s) 545, 809
HpyCH4V TGCA 5 cut(s) 39, 334, 442, 731, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 508, 854, 1019
HpyF3I CTNAG 3 cut(s) 402, 633, 941
Hsp92II CATG 7 cut(s) 39, 143, 245, 477, 515, 572, 758
HspAI GCGC 2 cut(s) 349, 351
Kzo9I GATC 3 cut(s) 181, 232, 675
LmnI GCTCC 2 cut(s) 136, 887
Lsp1109I GCAGC 4 cut(s) 380, 616, 652, 997
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 818, 911
MaeIII GTNAC 1 cut(s) 550
MalI GATC 3 cut(s) 183, 234, 677
MbiI CCGCTC 1 cut(s) 898
MboI GATC 3 cut(s) 181, 232, 675
MfeI CAATTG 1 cut(s) 886
MflI RGATCY 1 cut(s) 232
MluCI AATT 8 cut(s) 100, 308, 460, 611, 706, 717, 886, 998
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 8 cut(s) 10, 25, 114, 280, 295, 814, 839, 924
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 2 cut(s) 735, 1024
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 2 cut(s) 652, 973
MunI CAATTG 1 cut(s) 886
Mva1269I GAATGC 1 cut(s) 667
MvaI CCWGG 1 cut(s) 973
MvnI CGCG 2 cut(s) 351, 857
MwoI GCNNNNNNNGC 3 cut(s) 508, 854, 1019
NciI CCSGG 1 cut(s) 652
NdeII GATC 3 cut(s) 181, 232, 675
NlaIII CATG 7 cut(s) 39, 143, 245, 477, 515, 572, 758
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 2 cut(s) 39, 515
NspV TTCGAA 1 cut(s) 341
PaeI GCATGC 1 cut(s) 39
PagI TCATGA 2 cut(s) 241, 754
PauI GCGCGC 1 cut(s) 349
PctI GAATGC 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 3 cut(s) 560, 778, 863
PkrI GCNGC 4 cut(s) 370, 631, 667, 1012
Psp6I CCWGG 1 cut(s) 971
PspFI CCCAGC 2 cut(s) 53, 506
PspGI CCWGG 1 cut(s) 971
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 232
PteI GCGCGC 1 cut(s) 349
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 735, 1024
SatI GCNGC 4 cut(s) 369, 630, 666, 1011
Sau3AI GATC 3 cut(s) 181, 232, 675
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 2 cut(s) 652, 973
SfaNI GCATC 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 341
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
SphI GCATGC 1 cut(s) 39
Sse9I AATT 8 cut(s) 100, 308, 460, 611, 706, 717, 886, 998
SsiI CCGC 2 cut(s) 855, 896
SspMI CTAG 2 cut(s) 818, 911
StyD4I CCNGG 2 cut(s) 650, 971
StyI CCWWGG 2 cut(s) 63, 555
TaaI ACNGT 2 cut(s) 545, 809
TaqI TCGA 2 cut(s) 149, 341
TasI AATT 8 cut(s) 100, 308, 460, 611, 706, 717, 886, 998
TfiI GAWTC 3 cut(s) 560, 778, 863
Tru1I TTAA 2 cut(s) 735, 1024
Tru9I TTAA 2 cut(s) 735, 1024
TscAI CASTG 4 cut(s) 550, 594, 814, 884
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 4 cut(s) 368, 629, 665, 1010
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 7 cut(s) 207, 258, 263, 275, 494, 557, 876
TspRI CASTG 4 cut(s) 550, 594, 814, 884
XagI CCTNNNNNAGG 1 cut(s) 602
XapI RAATTY 3 cut(s) 100, 460, 611
XbaI TCTAGA 1 cut(s) 910
XceI RCATGY 2 cut(s) 39, 515
XmiI GTMKAC 2 cut(s) 804, 892
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 2 cut(s) 818, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.