FvH4_5g31520

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000856
Physical Location & Seq
Reverse (-)
22573792 .. 22578159
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31520.t1

Sequence Viewer

Length: 2967 bp
ATGGTCTTCATCACAACCCCAAACCACAAAACCCTAACCCTAAATCTAAACCCAAACACCACCACCCTCCTCACCCTCAAGCACCGAATCCAGCAAACCCTACTCATTCCCATCTCCCACCAGCGCCTTCTCCTCTCCCAGAGCCTCTCATTATCCACCCAAAACGACGCTGTTCTCCTCTCCGACCTCGGCGTCGGACCCCTCTCCACCTTCACCCTCCACACCCCCTTCCTCGGCGGCACCCTGCCCCACCGCTACGCCTTCCTCACCACCAAGCCCCCGCCCAACTACGTCGCCGGCCTCGGCCGCGGGGCCACCGGTTTCACCACCCGCTCCGACATCGGCCCCGCCCGGTCCAACCCCCCCCCGATCGGCGCTGTCCGGGAACAGCCGCAGGAAGCGGAGGATGACGATGGCTACGACGAGAATCAGGAATTCGACGAGTTTCTAGGAAACGACACAGGGCTGCTGGCGTCGGCGGACGGCGACGAGGACGACGACGAGGCTGACGCTATTTACGCGGCGATTGATCAGAGGATGGACTCGAGGAGGAAGGAAAGGAGAGAAGCGAGGGAGAAAGAGAAGGAGGAGAAATCCAATGAGGCTAATCCGAAGATCGCGGAGCAGTTTGCGGATTTGAAGAGGAAGCTGAGTTCCGTGTCCGACCAGGAATGGGAGAGCTTACCGGATATGGGGGATTATTCGTGGAAGAACAGGAAGAAGAGGAGATTCGAGAGCTTTGTTCCGGTGCCGGACACGCTTTTCGAGAGGGCCAGGCTGGAGAGGCAGACTGTTGCAACTGTCGACCCGATGAGTTCGGATTTGACTGCAGTGGGGAAGGGCAAGGGGACAATGATGAAGCTCAAGTTGGATAGGCTTTCGGATTCGGTTTCCGGGCTCACTAGTGTTGATCCCACGGGGTATCTTACTGAGCTTGTGAGTATGGGTATGAACAATGTGAGTGCTAGCTCGAATGTTTCGGATATAAAGAAGACTAGGCAGATGTACAGGAGTATAAGGGAGTCGAAGCCGGAGGACCCGTGTGGTTGGATTGCGGCTGCGAGGTTGGAGGAGAGGGTGGGGAAGTTGAAGGAGGCTAGGGGCATTATTAGGAAAGGGTGTGATATGTGTCCCAAGAATCAGGATGTGTGGTTAGAGGCGTGTAGGCTTGTTAGCCCCGAAGAAGCTAAGGCTGTTGTAGCTATGGGAGTGAAGCAGATACCGAATTCGGTGGATTTGTGGATGAGGGCTGCCGATTTGGAGCAGGATGATTTGATGAAGAAGAAGGTGTTGATGAAAGGGTTGGATCAAAGTAATAAGACGCTTCGTTGTGTTAGGCTGTGGAAGGCAGTGATGGCATTCTGTGATGAGGAGGAACAGAAAGTTATGCTTTATAGGGCTGTGGAAGTTTGTCCCTTGGAGGTTCAATTTTGGATTGCTCTTGCGAGGATGGAAACTAATTATGAGGTTGCCAAGAAGATTCTTAATAATGCTAGAACGCGTCTTCCGGAGGAGCGTGCCATTTGGGTTGAAGCAGCCAAGTTGGAAGAAGCTAGGGGGAATGTGTCTATGGTTGGGAAGATTATTGAAAGGGGTATAAAGCTTCTGCAGGAACAAAACCCGGTGAATTTCAGAGAAATATGGATGAAGGAAGCTACAATTGTTGAGCGTGCTGGGCATGTGGCGGTTTGCCAATCAATTATTCAGAATACAATTGGGGTTGGTGTGGAGGAAGAGGACAAGAAGAGGACTTGGCTTGTCGATGCAGAGGAGTGCGTGAAGAGTGGTTGCATCGAAACTGCAAGAGCAATTTATGCACACGCACTTACTGTTTTCTTAACCAAGAAGAGCATATGGCGCAATGCAGCAATGCTTGAAAAGAACCATGGGACCAAGGAATCTCTTGATGCTTTGCTTCGTAGAGCAGTGAAGTACCTACCAAAGGTTGATTTCTTTTGGCTTATGGCTGCTAAGGAGAACTGGCTTGCCGGGGACGTGAATGCTGCCAGAATGATCCTCGAAGAAGCTTCTAAGTCCCTTCCCAATTCCGAAGAAATTTTGCTTGCTGCATTTAAGCTAGAGTTTGAAAATCGTGAGCAAGAGAGAGCTAGAATGCTTCTTGACAAAATCCGAGAAAGAGTAGACAGTGGAAGAGTATGGATGAAATCAGCAATACTTCAGAGAGAATTAGGGAACTCTGATGAAGAGAAGAAGTTTATTGAGGAAGGGTTGAAGCGCTTTCCCTCATTCTTTAAATTGTGGTTGATGCTCGGACAGCTAGAGGAACGGCTCAATCAATTTATAAAAGCCAGGGCAGCGTATGAATTGGGTCTCAAGCACTGCTCCAGTTGTATACCACTCTGGCTTTCTCTTGCAAATCTTGGAGAGAAGATGAATGGTCTAAGTAAAGCTCGTGCAGTTCTCTCAACAGCCAGGAGGAAGAACCCTCGTAATCCTGAACTGTGGCTTGCTGCTGTTAAAGCTGAACTGAGGCATAGTAATAAGAGGGAAGCTGACACTTTGATTGCAAGGGCTTTGAAGGAGCTGGAGTGTCCCAACAGTGGTATCTTGTGGGCAGCATCAATTGGGATGGTACCATGCCCTCAAAGAAAGACCAAAAGTCGAGATGCCTACTTCTGTTGTGGTCAGGAAGATCCCCATGTTAATGCTGCTGTGGCCCAGGTATTTTGGGATGACAGAAAGCTAGACAGAGCTAGGACTAGGTTTAACCTAGCAGTAAAACATGCACCGGAAAATGGAGATTTCTGGACTTTGTATTACAAGTTTGAACTTCAGAACGGAACTGAGGAGACACGGAAGGACGTAGTGGAAAGGTGTGTTGCTGCTCAACCAAAGTATGGTGAAAAATGGCAAACTATTTCAAAGGCTGTGGAGAACTGGCACCAACCAACTGAAGCTATCTTGAAGAAAGCTGTGAGTGAAGATGCCGCCACAAATCAACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

989

Amino Acids

111.95

Weight (kDa)

8.12

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 93 - 236 9.7e-52 PRP1 splicing factor, N-terminal
HAT_Syf1_CNRKL1_C PF23231 485 - 640 1.1e-06 Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2303
AasI GACNNNNNNGTC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 2593
AccB1I GGYRCC 4 cut(s) 239, 748, 2593, 2901
AccB7I CCANNNNNTGG 1 cut(s) 2858
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 3 cut(s) 804, 2142, 2353
AccII CGCG 4 cut(s) 309, 521, 620, 1501
AccIII TCCGGA 1 cut(s) 1507
AclWI GGATC 4 cut(s) 905, 1314, 2008, 2648
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 4 cut(s) 434, 1225, 1627, 2055
AcuI CTGAAG 3 cut(s) 2162, 2777, 2934
AcyI GRCGYC 2 cut(s) 192, 473
AfaI GTAC 3 cut(s) 1007, 1934, 2595
AfeI AGCGCT 1 cut(s) 2237
AfiI CCNNNNNNNGG 8 cut(s) 233, 371, 673, 692, 1942, 2561, 2756, 2858
AflIII ACRYGT 1 cut(s) 1499
AgeI ACCGGT 1 cut(s) 317
AhdI GACNNNNNGTC 1 cut(s) 2619
AhlI ACTAGT 1 cut(s) 902
AjiI CACGTC 1 cut(s) 1996
AjnI CCWGG 5 cut(s) 666, 773, 2309, 2432, 2679
AjuI GAANNNNNNNTTGG 4 cut(s) 851, 883, 1686, 1718
AloI GAACNNNNNNTCC 4 cut(s) 637, 669, 1489, 1521
Alw26I GTCTC 2 cut(s) 2336, 2804
AlwI GGATC 4 cut(s) 905, 1314, 2008, 2648
Ama87I CYCGRG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 1507
Aor51HI AGCGCT 1 cut(s) 2237
AoxI GGCC 6 cut(s) 298, 304, 312, 343, 771, 2676
ApoI RAATTY 4 cut(s) 434, 1225, 1627, 2055
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AsiGI ACCGGT 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 2593
AspLEI GCGC 4 cut(s) 126, 377, 1860, 2238
AspS9I GGNCC 8 cut(s) 197, 312, 344, 354, 771, 1036, 1890, 2677
AsuC2I CCSGG 5 cut(s) 352, 383, 895, 1622, 1990
AsuHPI GGTGA 6 cut(s) 64, 205, 259, 316, 1636, 2873
AsuNHI GCTAGC 1 cut(s) 965
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 4 cut(s) 197, 354, 1036, 1890
BaeI ACNNNNGTAYC 2 cut(s) 2548, 2581
BanI GGYRCC 4 cut(s) 239, 748, 2593, 2901
BanII GRGCYC 1 cut(s) 900
BauI CACGAG 1 cut(s) 2412
BbsI GAAGAC 2 cut(s) 998, 1496
BccI CCATC 6 cut(s) 119, 407, 532, 1348, 1444, 2584
BceAI ACGGC 2 cut(s) 499, 2303
BciT130I CCWGG 5 cut(s) 668, 775, 2311, 2434, 2681
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 5 cut(s) 352, 383, 895, 1622, 1990
BcoDI GTCTC 2 cut(s) 2336, 2804
BcuI ACTAGT 1 cut(s) 902
BfmI CTRYAG 3 cut(s) 828, 1607, 2963
BfoI RGCGCY 3 cut(s) 127, 378, 2239
Bme18I GGWCC 4 cut(s) 197, 354, 1036, 1890
BmeRI GACNNNNNGTC 1 cut(s) 2619
BmeT110I CYCGRG 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 1996
BmgT120I GGNCC 8 cut(s) 197, 312, 344, 354, 771, 1036, 1890, 2677
BmiI GGNNCC 9 cut(s) 199, 241, 313, 346, 750, 1038, 1891, 2595, 2903
BmsI GCATC 7 cut(s) 1753, 1800, 1897, 2256, 2588, 2617, 2935
BmtI GCTAGC 1 cut(s) 969
BpiI GAAGAC 2 cut(s) 998, 1496
BpmI CTGGAG 3 cut(s) 800, 2329, 2567
Bpu10I CCTNAGC 2 cut(s) 1188, 1971
BpuEI CTTGAG 3 cut(s) 62, 848, 2318
BpuMI CCSGG 5 cut(s) 352, 383, 895, 1622, 1990
BsaHI GRCGYC 2 cut(s) 192, 473
BsaI GGTCTC 1 cut(s) 2336
BsaWI WCCGGW 5 cut(s) 317, 685, 745, 1507, 2749
BsaXI ACNNNNNCTCC 4 cut(s) 1025, 1055, 2534, 2564
Bsc4I CCNNNNNNNGG 8 cut(s) 233, 371, 673, 692, 1942, 2561, 2756, 2858
Bse118I RCCGGY 2 cut(s) 296, 317
Bse1I ACTGG 3 cut(s) 1985, 2346, 2903
Bse3DI GCAATG 2 cut(s) 1867, 1875
BseAI TCCGGA 1 cut(s) 1507
BseBI CCWGG 5 cut(s) 668, 775, 2311, 2434, 2681
BseLI CCNNNNNNNGG 8 cut(s) 233, 371, 673, 692, 1942, 2561, 2756, 2858
BseMI GCAATG 2 cut(s) 1867, 1875
BseMII CTCAG 4 cut(s) 641, 921, 2480, 2796
BseNI ACTGG 3 cut(s) 1985, 2346, 2903
BseX3I CGGCCG 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 1673
BsgI GTGCAG 1 cut(s) 2436
Bsh1236I CGCG 4 cut(s) 309, 521, 620, 1501
Bsh1285I CGRYCG 2 cut(s) 307, 372
BshFI GGCC 6 cut(s) 300, 306, 314, 345, 773, 2678
BshNI GGYRCC 4 cut(s) 239, 748, 2593, 2901
BshTI ACCGGT 1 cut(s) 317
BsiEI CGRYCG 2 cut(s) 307, 372
BsiHKCI CYCGRG 1 cut(s) 544
BslFI GGGAC 7 cut(s) 862, 1116, 1398, 1903, 2006, 2020, 2538
BslI CCNNNNNNNGG 8 cut(s) 233, 371, 673, 692, 1942, 2561, 2756, 2858
BsmAI GTCTC 2 cut(s) 2336, 2804
BsmFI GGGAC 7 cut(s) 862, 1116, 1398, 1903, 2006, 2020, 2538
BsmI GAATGC 3 cut(s) 1358, 2005, 2118
BsnI GGCC 6 cut(s) 300, 306, 314, 345, 773, 2678
Bso31I GGTCTC 1 cut(s) 2336
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 900
Bsp13I TCCGGA 1 cut(s) 1507
Bsp1407I TGTACA 1 cut(s) 1005
Bsp143I GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
Bsp19I CCATGG 1 cut(s) 1885
BspANI GGCC 6 cut(s) 300, 306, 314, 345, 773, 2678
BspCNI CTCAG 4 cut(s) 642, 922, 2481, 2797
BspEI TCCGGA 1 cut(s) 1507
BspFNI CGCG 4 cut(s) 309, 521, 620, 1501
BspLI GGNNCC 9 cut(s) 199, 241, 313, 346, 750, 1038, 1891, 2595, 2903
BspMAI CTGCAG 2 cut(s) 832, 1611
BspOI GCTAGC 1 cut(s) 969
BspPI GGATC 4 cut(s) 905, 1314, 2008, 2648
BspQI GCTCTTC 1 cut(s) 1841
BspT107I GGYRCC 4 cut(s) 239, 748, 2593, 2901
BspTNI GGTCTC 1 cut(s) 2336
BsrBI CCGCTC 1 cut(s) 333
BsrDI GCAATG 2 cut(s) 1867, 1875
BsrFI RCCGGY 2 cut(s) 296, 317
BsrGI TGTACA 1 cut(s) 1005
BsrI ACTGG 3 cut(s) 1985, 2346, 2903
BssAI RCCGGY 2 cut(s) 296, 317
BssMI GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
BssNAI GTATAC 1 cut(s) 2354
BssNI GRCGYC 2 cut(s) 192, 473
BssSI CACGAG 1 cut(s) 2412
BssT1I CCWWGG 3 cut(s) 1416, 1885, 1893
Bst1107I GTATAC 1 cut(s) 2354
Bst2BI CACGAG 1 cut(s) 2412
Bst2UI CCWGG 5 cut(s) 668, 775, 2311, 2434, 2681
Bst4CI ACNGT 7 cut(s) 793, 802, 1831, 2147, 2463, 2561, 2964
Bst6I CTCTTC 8 cut(s) 635, 716, 1728, 1739, 1775, 1841, 2146, 2199
BstACI GRCGYC 2 cut(s) 192, 473
BstAPI GCANNNNNTGC 1 cut(s) 1814
BstAUI TGTACA 1 cut(s) 1005
BstC8I GCNNGC 8 cut(s) 298, 471, 967, 1518, 1671, 1986, 2064, 2469
BstDEI CTNAG 8 cut(s) 650, 930, 1188, 1971, 2031, 2402, 2489, 2805
BstDSI CCRYGG 3 cut(s) 307, 915, 1885
BstENI CCTNNNNNAGG 1 cut(s) 1940
BstFNI CGCG 4 cut(s) 309, 521, 620, 1501
BstH2I RGCGCY 3 cut(s) 127, 378, 2239
BstHHI GCGC 4 cut(s) 126, 377, 1860, 2238
BstKTI GATC 7 cut(s) 372, 532, 618, 913, 1309, 2016, 2656
BstMAI GTCTC 2 cut(s) 2336, 2804
BstMBI GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
BstMCI CGRYCG 2 cut(s) 307, 372
BstNI CCWGG 5 cut(s) 668, 775, 2311, 2434, 2681
BstNSI RCATGY 2 cut(s) 1682, 2747
BstSFI CTRYAG 3 cut(s) 828, 1607, 2963
BstUI CGCG 4 cut(s) 309, 521, 620, 1501
BstV2I GAAGAC 2 cut(s) 998, 1496
BstX2I RGATCY 1 cut(s) 2653
BstYI RGATCY 1 cut(s) 2653
BstZ17I GTATAC 1 cut(s) 2354
BstZI CGGCCG 1 cut(s) 304
BsuRI GGCC 6 cut(s) 300, 306, 314, 345, 773, 2678
BtgI CCRYGG 3 cut(s) 307, 915, 1885
BtrI CACGTC 1 cut(s) 1996
BtsI GCAGTG 4 cut(s) 837, 1356, 1932, 2338
BtsIMutI CAGTG 6 cut(s) 837, 1356, 1932, 2152, 2338, 2566
Cac8I GCNNGC 8 cut(s) 298, 471, 967, 1518, 1671, 1986, 2064, 2469
CfoI GCGC 4 cut(s) 126, 377, 1860, 2238
Cfr10I RCCGGY 2 cut(s) 296, 317
Cfr13I GGNCC 8 cut(s) 197, 312, 344, 354, 771, 1036, 1890, 2677
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 6 cut(s) 176, 181, 462, 518, 1330, 1490
Csp6I GTAC 3 cut(s) 1006, 1933, 2594
CspAI ACCGGT 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 2871, 2906
CviAII CATG 5 cut(s) 1679, 1886, 2598, 2660, 2744
CviQI GTAC 3 cut(s) 1006, 1933, 2594
DdeI CTNAG 8 cut(s) 650, 930, 1188, 1971, 2031, 2402, 2489, 2805
DpnI GATC 7 cut(s) 371, 531, 617, 912, 1308, 2015, 2655
DpnII GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
DraI TTTAAA 1 cut(s) 2254
DrdI GACNNNNNNGTC 1 cut(s) 191
DriI GACNNNNNGTC 1 cut(s) 2619
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 304
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 8 cut(s) 635, 716, 1728, 1739, 1775, 1841, 2146, 2199
Eam1105I GACNNNNNGTC 1 cut(s) 2619
EarI CTCTTC 8 cut(s) 635, 716, 1728, 1739, 1775, 1841, 2146, 2199
EciI GGCGGA 1 cut(s) 494
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 3 cut(s) 1416, 1885, 1893
Eco24I GRGCYC 1 cut(s) 900
Eco31I GGTCTC 1 cut(s) 2336
Eco47I GGWCC 4 cut(s) 197, 354, 1036, 1890
Eco47III AGCGCT 1 cut(s) 2237
Eco52I CGGCCG 1 cut(s) 304
Eco57I CTGAAG 3 cut(s) 2162, 2777, 2934
Eco88I CYCGRG 1 cut(s) 544
EcoNI CCTNNNNNAGG 1 cut(s) 1940
EcoO109I RGGNCCY 1 cut(s) 1036
EcoRI GAATTC 2 cut(s) 434, 1225
EcoRII CCWGG 5 cut(s) 666, 773, 2309, 2432, 2679
EcoT14I CCWWGG 3 cut(s) 1416, 1885, 1893
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 3 cut(s) 1416, 1885, 1893
FaeI CATG 5 cut(s) 1682, 1889, 2601, 2663, 2747
FalI AAGNNNNNCTT 2 cut(s) 1374, 1406
FaqI GGGAC 7 cut(s) 862, 1116, 1398, 1903, 2006, 2020, 2538
FatI CATG 5 cut(s) 1678, 1885, 2597, 2659, 2743
FauI CCCGC 4 cut(s) 288, 302, 338, 355
FauNDI CATATG 1 cut(s) 1853
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 3 cut(s) 804, 2142, 2353
FriOI GRGCYC 1 cut(s) 900
GlaI GCGC 4 cut(s) 125, 376, 1859, 2237
GsaI CCCAGC 1 cut(s) 1677
GsuI CTGGAG 3 cut(s) 800, 2329, 2567
HaeII RGCGCY 3 cut(s) 127, 378, 2239
HaeIII GGCC 6 cut(s) 300, 306, 314, 345, 773, 2678
HgaI GACGC 6 cut(s) 176, 181, 462, 518, 1330, 1490
HhaI GCGC 4 cut(s) 126, 377, 1860, 2238
Hin1I GRCGYC 2 cut(s) 192, 473
Hin1II CATG 5 cut(s) 1682, 1889, 2601, 2663, 2747
Hin6I GCGC 4 cut(s) 124, 375, 1858, 2236
HinP1I GCGC 4 cut(s) 124, 375, 1858, 2236
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HindIII AAGCTT 2 cut(s) 1601, 2025
HinfI GANTC 9 cut(s) 87, 427, 542, 729, 884, 1022, 1138, 1480, 1898
HphI GGTGA 6 cut(s) 64, 205, 259, 316, 1636, 2873
Hpy166II GTNNAC 3 cut(s) 805, 2143, 2354
Hpy8I GTNNAC 3 cut(s) 805, 2143, 2354
Hpy99I CGWCG 9 cut(s) 170, 197, 296, 425, 443, 478, 491, 500, 503
HpyCH4III ACNGT 7 cut(s) 793, 802, 1831, 2147, 2463, 2561, 2964
HpyCH4IV ACGT 3 cut(s) 291, 1995, 2823
HpyF3I CTNAG 8 cut(s) 650, 930, 1188, 1971, 2031, 2402, 2489, 2805
HpySE526I ACGT 3 cut(s) 291, 1995, 2823
Hsp92I GRCGYC 2 cut(s) 192, 473
Hsp92II CATG 5 cut(s) 1682, 1889, 2601, 2663, 2747
HspAI GCGC 4 cut(s) 124, 375, 1858, 2236
Kpn2I TCCGGA 1 cut(s) 1507
KpnI GGTACC 1 cut(s) 2597
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 529
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
LguI GCTCTTC 1 cut(s) 1841
LmnI GCTCC 6 cut(s) 338, 622, 1261, 1513, 2348, 2542
LweI GCATC 7 cut(s) 1753, 1800, 1897, 2256, 2588, 2617, 2935
MaeII ACGT 3 cut(s) 291, 1995, 2823
MalI GATC 7 cut(s) 371, 531, 617, 912, 1308, 2015, 2655
MbiI CCGCTC 1 cut(s) 333
MboI GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
MfeI CAATTG 3 cut(s) 1659, 1713, 2583
MflI RGATCY 1 cut(s) 2653
MhlI GDGCHC 1 cut(s) 900
MluI ACGCGT 1 cut(s) 1499
MlyI GAGTC 2 cut(s) 536, 1031
MroI TCCGGA 1 cut(s) 1507
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 7 cut(s) 1485, 1838, 2073, 2253, 2478, 2664, 2727
MslI CAYNNNNRTG 1 cut(s) 2664
MspA1I CMGCKG 1 cut(s) 309
MunI CAATTG 3 cut(s) 1659, 1713, 2583
Mva1269I GAATGC 3 cut(s) 1358, 2005, 2118
MvaI CCWGG 5 cut(s) 668, 775, 2311, 2434, 2681
MvnI CGCG 4 cut(s) 309, 521, 620, 1501
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 5 cut(s) 352, 383, 895, 1622, 1990
NcoI CCATGG 1 cut(s) 1885
NdeI CATATG 1 cut(s) 1853
NdeII GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
NgoMIV GCCGGC 1 cut(s) 296
NheI GCTAGC 1 cut(s) 965
NlaIII CATG 5 cut(s) 1682, 1889, 2601, 2663, 2747
NlaIV GGNNCC 9 cut(s) 199, 241, 313, 346, 750, 1038, 1891, 2595, 2903
NmeAIII GCCGAG 3 cut(s) 168, 213, 282
NspI RCATGY 2 cut(s) 1682, 2747
PaeR7I CTCGAG 1 cut(s) 544
PciSI GCTCTTC 1 cut(s) 1841
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 495
PctI GAATGC 3 cut(s) 1358, 2005, 2118
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 7 cut(s) 87, 427, 729, 884, 1138, 1480, 1898
PflMI CCANNNNNTGG 1 cut(s) 2858
PfoI TCCNGGA 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 317
Ple19I CGATCG 1 cut(s) 372
PleI GAGTC 2 cut(s) 536, 1030
PpsI GAGTC 2 cut(s) 536, 1030
PpuMI RGGWCCY 1 cut(s) 1036
PsiI TTATAA 1 cut(s) 2303
Psp5II RGGWCCY 1 cut(s) 1036
Psp6I CCWGG 5 cut(s) 666, 773, 2309, 2432, 2679
PspFI CCCAGC 1 cut(s) 1673
PspGI CCWGG 5 cut(s) 666, 773, 2309, 2432, 2679
PspN4I GGNNCC 9 cut(s) 199, 241, 313, 346, 750, 1038, 1891, 2595, 2903
PspPI GGNCC 8 cut(s) 197, 312, 344, 354, 771, 1036, 1890, 2677
PspPPI RGGWCCY 1 cut(s) 1036
PspXI VCTCGAGB 1 cut(s) 544
PstI CTGCAG 2 cut(s) 832, 1611
PsuI RGATCY 1 cut(s) 2653
PvuI CGATCG 1 cut(s) 372
RsaI GTAC 3 cut(s) 1007, 1934, 2595
RsaNI GTAC 3 cut(s) 1006, 1933, 2594
RseI CAYNNNNRTG 1 cut(s) 2664
SacII CCGCGG 1 cut(s) 310
SalI GTCGAC 1 cut(s) 803
SapI GCTCTTC 1 cut(s) 1841
SaqAI TTAA 7 cut(s) 1485, 1838, 2073, 2253, 2478, 2664, 2727
Sau3AI GATC 7 cut(s) 369, 529, 615, 910, 1306, 2013, 2653
Sau96I GGNCC 8 cut(s) 197, 312, 344, 354, 771, 1036, 1890, 2677
SchI GAGTC 2 cut(s) 536, 1031
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 7 cut(s) 1753, 1800, 1897, 2256, 2588, 2617, 2935
SfcI CTRYAG 3 cut(s) 828, 1607, 2963
Sfr274I CTCGAG 1 cut(s) 544
Sfr303I CCGCGG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 4 cut(s) 197, 354, 1036, 1890
SlaI CTCGAG 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 2664
SmlI CTYRAG 4 cut(s) 77, 544, 863, 2333
SmoI CTYRAG 4 cut(s) 77, 544, 863, 2333
SpeI ACTAGT 1 cut(s) 902
StyI CCWWGG 3 cut(s) 1416, 1885, 1893
TaaI ACNGT 7 cut(s) 793, 802, 1831, 2147, 2463, 2561, 2964
TaiI ACGT 3 cut(s) 294, 1998, 2826
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 6 cut(s) 240, 309, 394, 524, 1058, 2951
TfiI GAWTC 7 cut(s) 87, 427, 729, 884, 1138, 1480, 1898
Tru1I TTAA 7 cut(s) 1485, 1838, 2073, 2253, 2478, 2664, 2727
Tru9I TTAA 7 cut(s) 1485, 1838, 2073, 2253, 2478, 2664, 2727
TscAI CASTG 6 cut(s) 837, 1356, 1932, 2152, 2345, 2566
TspDTI ATGAA 9 cut(s) 872, 965, 1292, 1310, 1661, 2177, 2217, 2337, 2408
TspGWI ACGGA 3 cut(s) 646, 2814, 2830
TspRI CASTG 6 cut(s) 837, 1356, 1932, 2152, 2345, 2566
Van91I CCANNNNNTGG 1 cut(s) 2858
VpaK11BI GGWCC 4 cut(s) 197, 354, 1036, 1890
XagI CCTNNNNNAGG 1 cut(s) 1940
XapI RAATTY 4 cut(s) 434, 1225, 1627, 2055
XceI RCATGY 2 cut(s) 1682, 2747
XhoI CTCGAG 1 cut(s) 544
XmiI GTMKAC 3 cut(s) 804, 2142, 2353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.