Rh6DG197100

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000856
Physical Location & Seq
Reverse (-)
35254633 .. 35270019
15387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG197100.1

Sequence Viewer

Length: 744 bp
ATGGGTGCTAAGGAGAAGTGGCTTGCTGGGGACGTCCTTGCTGCCCGTGCAATCCTCCAAGAAGCTTATGCTGCCATTCCGAATTCTGAAGAAATTTGGATTGCTACGTTTAAGCTTGAATTTGAGAATCATGAACCTGAGAGAGCTAGGATGCTTCTTGCCAAAGCCCGAGAAAGGGGAGGAACAGAGAGAGTATGGATGAAATCAGCAATAGTTGAAAGAGAATTAGGGAACCTCGATGAGGAGAGGAAGTTGCTTGCTGAAGGATTGAAGGGCTTCCCTTCGTTCTTTAAATTGTGGTTGATGCTTGTACAGCTAGAGGAATGGCTTACCCATTTGGAAAAAGCCAAGGAGGCTTATGACTCGGGTCTTAAGCACTGCTCCAAGTCTATACCACTCTGGCTTTCTCTTGCAAATCTTGAAGAGAAGATGAATGGGCTGACTAAAGCTCGTGCAGTTCTTTCGATGGCCAGGAAGAAAAATCCTCAGAATCCTGAACTGTGGCTTGCTGCTGTTCGAGCTGAATTGAGGAATGGTAATAAGAGGGAAGCTGATATTTTGATGGCAAAGGCCTTGCAGGAGTGTTCCAATAGTGGTATCTTGTGGGCAGCTTCTATTGAGATGGTACCCCGTCCCCAAAGGAAGACCAAAATTGCTCACAAACGCAATATCATACAACACCATATTGAAGGAGAACTGGAGAACCCATCATTAATCAAAGCGGGAAATGAAGCAGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

247

Amino Acids

28.05

Weight (kDa)

8.76

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
Acc65I GGTACC 1 cut(s) 625
AccB1I GGYRCC 1 cut(s) 625
AciI CCGC 1 cut(s) 722
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 3 cut(s) 82, 93, 119
AcuI CTGAAG 2 cut(s) 108, 282
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 2 cut(s) 312, 627
AfiI CCNNNNNNNGG 3 cut(s) 174, 175, 241
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 5 cut(s) 119, 218, 271, 422, 689
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 8 cut(s) 65, 115, 146, 316, 449, 521, 551, 611
AluI AGCT 8 cut(s) 65, 115, 146, 316, 449, 521, 551, 611
Ama87I CYCGRG 2 cut(s) 168, 364
AoxI GGCC 2 cut(s) 468, 570
ApeKI GCWGC 4 cut(s) 41, 71, 509, 608
ApoI RAATTY 3 cut(s) 82, 93, 119
AseI ATTAAT 1 cut(s) 713
Asp700I GAANNNNTTC 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 625
AvaI CYCGRG 2 cut(s) 168, 364
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 1 cut(s) 625
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 650
BbvI GCAGC 4 cut(s) 28, 58, 496, 620
BccI CCATC 4 cut(s) 460, 556, 616, 715
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 1 cut(s) 472
BfaI CTAG 2 cut(s) 147, 317
BfrI CTTAAG 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 4 cut(s) 42, 72, 510, 609
BlsI GCNGC 4 cut(s) 43, 73, 511, 610
Bme1390I CCNGG 1 cut(s) 472
BmeT110I CYCGRG 2 cut(s) 168, 364
BmiI GGNNCC 2 cut(s) 233, 627
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 141, 294
BoxI GACNNNNGTC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 174, 175, 241
Bse1I ACTGG 1 cut(s) 702
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 156, 204
BseLI CCNNNNNNNGG 3 cut(s) 174, 175, 241
BseMII CTCAG 2 cut(s) 129, 500
BseNI ACTGG 1 cut(s) 702
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 4 cut(s) 28, 58, 496, 620
BseYI CCCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 2 cut(s) 470, 572
BshNI GGYRCC 1 cut(s) 625
BsiHKCI CYCGRG 2 cut(s) 168, 364
BslFI GGGAC 2 cut(s) 44, 618
BslI CCNNNNNNNGG 3 cut(s) 174, 175, 241
BsmFI GGGAC 2 cut(s) 44, 618
BsnI GGCC 2 cut(s) 470, 572
BsoBI CYCGRG 2 cut(s) 168, 364
Bsp1407I TGTACA 1 cut(s) 310
BspACI CCGC 1 cut(s) 722
BspANI GGCC 2 cut(s) 470, 572
BspCNI CTCAG 2 cut(s) 130, 499
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 233, 627
BspT107I GGYRCC 1 cut(s) 625
BspTI CTTAAG 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 702
BssECI CCNNGG 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 24, 258, 507
BstDEI CTNAG 3 cut(s) 9, 138, 486
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 156, 204
BstMWI GCNNNNNNNGC 5 cut(s) 47, 71, 313, 353, 518
BstNI CCWGG 1 cut(s) 472
BstPAI GACNNNNGTC 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 470
BstV1I GCAGC 4 cut(s) 28, 58, 496, 620
BstV2I GAAGAC 1 cut(s) 650
BsuRI GGCC 2 cut(s) 470, 572
BtsCI GGATG 2 cut(s) 156, 204
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 24, 258, 507
CciI TCATGA 1 cut(s) 130
Csp6I GTAC 2 cut(s) 311, 626
CviAII CATG 1 cut(s) 131
CviQI GTAC 2 cut(s) 311, 626
DdeI CTNAG 3 cut(s) 9, 138, 486
DraI TTTAAA 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 572
Eco57I CTGAAG 2 cut(s) 108, 282
Eco88I CYCGRG 2 cut(s) 168, 364
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 470
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 134
FaiI YATR 7 cut(s) 69, 132, 196, 360, 392, 674, 684
FaqI GGGAC 2 cut(s) 44, 618
FatI CATG 1 cut(s) 130
FauI CCCGC 1 cut(s) 715
Fnu4HI GCNGC 4 cut(s) 42, 72, 510, 609
FokI GGATG 2 cut(s) 163, 211
Fsp4HI GCNGC 4 cut(s) 42, 72, 510, 609
FspBI CTAG 2 cut(s) 147, 317
GluI GCNGC 4 cut(s) 42, 72, 510, 609
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 719
HaeIII GGCC 2 cut(s) 470, 572
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 63, 113
HinfI GANTC 3 cut(s) 127, 362, 490
Hpy188I TCNGA 3 cut(s) 81, 88, 489
Hpy188III TCNNGA 3 cut(s) 131, 419, 494
HpyAV CCTTC 4 cut(s) 257, 265, 291, 683
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4IV ACGT 2 cut(s) 33, 107
HpyCH4V TGCA 4 cut(s) 50, 413, 455, 577
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 71, 313, 353, 518
HpyF3I CTNAG 3 cut(s) 9, 138, 486
HpySE526I ACGT 2 cut(s) 33, 107
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 134
KpnI GGTACC 1 cut(s) 629
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 8 cut(s) 12, 150, 385, 457, 484, 507, 563, 683
Lsp1109I GCAGC 4 cut(s) 28, 58, 496, 620
LweI GCATC 2 cut(s) 141, 294
MaeI CTAG 2 cut(s) 147, 317
MaeII ACGT 2 cut(s) 33, 107
MboII GAAGA 5 cut(s) 101, 434, 439, 487, 655
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 7 cut(s) 82, 93, 119, 224, 293, 524, 651
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 1 cut(s) 356
Mox20I TGGCCA 1 cut(s) 470
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 1 cut(s) 470
MseI TTAA 4 cut(s) 111, 291, 372, 713
Msp20I TGGCCA 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 5 cut(s) 47, 71, 313, 353, 518
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 233, 627
PagI TCATGA 1 cut(s) 130
PceI AGGCCT 1 cut(s) 572
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 127, 490
PkrI GCNGC 4 cut(s) 43, 73, 511, 610
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PshAI GACNNNNGTC 1 cut(s) 366
PshBI ATTAAT 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 470
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 233, 627
RsaI GTAC 2 cut(s) 312, 627
RsaNI GTAC 2 cut(s) 311, 626
SaqAI TTAA 4 cut(s) 111, 291, 372, 713
SatI GCNGC 4 cut(s) 42, 72, 510, 609
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 472
SfaNI GCATC 2 cut(s) 141, 294
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 7 cut(s) 82, 93, 119, 224, 293, 524, 651
SseBI AGGCCT 1 cut(s) 572
SsiI CCGC 1 cut(s) 722
SspMI CTAG 2 cut(s) 147, 317
StuI AGGCCT 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 501
TaiI ACGT 2 cut(s) 36, 110
TaqI TCGA 3 cut(s) 237, 464, 517
TasI AATT 7 cut(s) 82, 93, 119, 224, 293, 524, 651
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 2 cut(s) 127, 490
Tru1I TTAA 4 cut(s) 111, 291, 372, 713
Tru9I TTAA 4 cut(s) 111, 291, 372, 713
TscAI CASTG 1 cut(s) 383
TseI GCWGC 4 cut(s) 41, 71, 509, 608
TspDTI ATGAA 4 cut(s) 147, 215, 446, 744
TspRI CASTG 1 cut(s) 383
Vha464I CTTAAG 1 cut(s) 371
VspI ATTAAT 1 cut(s) 713
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 3 cut(s) 82, 93, 119
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 2 cut(s) 147, 317
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.