AT4G03430

PRP1 splicing factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000856
Physical Location & Seq
Reverse (-)
1516030 .. 1520563
4534 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03430.1

Sequence Viewer

Length: 3090 bp
ATGGTGTTTCTCTCGATTCCAAACGGGAAGACTTTATCGATCGACGTGAACCCTAATTCAACCACCATCTCCGCCTTCGAACAATTGGCCCACCAACGTAGTGATGTTCCACAATCTTTCCTTCGTTACTCTCTCCGTATGCGAAACCCTAGCCGCGTGTTTGTAGATTCAAAGGATTCCGATTCGATCTTATTGTCCGATCTCGGTGTTTCTCGTTTCTCTACTGTGATTATCCATGTCCTGCTTTTGGGTGGTATGCAAGCGGCTCCGCCGAAGCCTCGTCTTGATTTCCTCAATTCTAAGCCTCCGTCAAATTATGTAGCGGGTTTGGGTCGTGGTGCTACTGGGTTTACTACTCGATCTGATATTGGTCCTGCTCGTGCTGCTCCGGATCTTCCTGATCGGTCTGCTTTGGCTACAGCGGCTGCTCCAGGAGTAGGTCGTGGAGCAGGGAAGCCAAGTGAAGCGGAAGCGGAGGACGATGAAGAAGCTGAGGAGAAAAGGTACGATGAGAATCAGACGTTTGATGAGTTTGAAGGGAATGATGTTGGTTTGTTCGCTAATGCTGAGTACGATGAGGATGATAAAGAGGCTGATGCCATCTGGGAGTCTATTGATCAGAGGATGGATTCGAGGAGGAAAGATCGGAGAGAAGCGAAGCTGAAGGAAGAAATCGAGAAATACCGAGCCTCGAACCCTAAGATTACTGAGCAGTTTGCGGATTTGAAGAGGAAATTACACACTTTGTCTGCGGATGAGTGGGATAGTATTCCTGAGATTGGGGATTACTCGCTGAGGAACAAGAAGAAGAAGTTTGAGAGCTTTGTGCCTATTCCTGATACGCTTTTGGAGAAGGCGAAGAAAGAAAAGGAGCTTGTCATGGCCTTAGACCCAAAGAGCAGAGCCGCTGGTGGGTCGGAGACACCATGGGGGCAGACGCCGGTGACAGACTTGACTGCTGTCGGTGAGGGAAGAGGTACGGTGTTGTCTCTGAAGCTTGATAACCTATCAGATTCAGTTTCGGGGCAAACTGTAGTGGATCCTAAAGGCTACTTAACTGACCTGAAGAGTATGAAAAGAACCACTGATGAAGAGATATACGATCGCAATAGAGCTAGATTGTTATACAAGAGTCTGACCCAGTCGAATCCAAAGAATCCAAATGGCTGGATTGCTGCTGCTAGAGTGGAGGAGGTGGATGGGAAGATTAAAGCAGCTAGGTTTCAGATTCAGAGGGGCTGCGAAGAGTGCCCGAAAAATGAGGATGTTTGGCTTGAAGCTTGTAGGTTAGCTAATCCAGAAGATGCCAAGGGGGTTATTGCGAAGGGAGTTAAGCTGATACCCAATTCAGTGAAGCTATGGTTGGAGGCTGCAAAGCTGGAGCATGATGTGGAGAACAAGAGTAGGGTGTTGAGAAAGGGACTGGAACATATTCCAGACTCTGTAAGACTATGGAAGGCTGTTGTTGAGTTGGCTAATGAGGAGGATGCAAGGATTTTGCTTCACAGGGCTGTGGAGTGCTGCCCTTTGCATCTGGAGCTATGGGTGGCACTTGCGAGGCTCGAAACATATGCTGAATCAAAGAAGGTGTTGAACAAAGCGAGAGAGAAGCTCCCAAAGGAGCCTGCAATTTGGATCACCGCTGCTAAGTTAGAAGAAGCTAATGGGAAGCTAGATGAAGCTAATGATAACACGGCTATGGTGGGAAAGATTATTGATAGGGGTATAAAGACTCTCCAGAGAGAAGGGGTTGTTATTGACCGAGAAAATTGGATGAGTGAGGCTGAGGCATGTGAGAGAGTTGGATCTGTCGCTACATGCCAGGCCATTATTAAGAACACAATAGGTATTGGAGTGGAAGAAGAGGATAGAAAGAGAACTTGGGTTGCTGATGCAGATGAGTGCAAGAAGAGGGGTTCCATTGAGACCGCAAGAGCAATATACGCCCATGCTCTTAGTGTATTCTTGACCAAGAAAAGTATCTGGCTTAAAGCGGCGCAGCTTGAGAAGAGCCATGGGAGTCGGGAGTCCCTTGATGCCTTGTTGCGTAAGGCTGTAACATATGTCCCGCAAGCTGAGGTTCTCTGGCTCATGGGTGCCAAAGAGAAGTGGCTCGCTGGAGATGTTCCAGCAGCCCGTGCTATTCTACAAGAGGCTTATGCTGCAATTCCCAACTCTGAGGAAATCTGGCTTGCTGCTTTCAAGCTTGAGTTTGAGAACAAGGAGCCGGAGAGGGCAAGAATGCTGCTTGCAAAAGCAAGGGAAAGAGGAGGGACTGAAAGGGTCTGGATGAAATCAGCCATTGTTGAGAGAGAACTTGGCAACGTAGAGGAGGAGAGGAGATTGCTTAATGAAGGTTTGAAGCAATTCCCAACATTCTTCAAGCTTTGGTTAATGCTTGGGCAGCTCGAGGAACGGTTCAAGCATCTAGAACAGGCCAGGAAAGCTTATGACACTGGTTTGAAGCACTGTCCCCACTGCATACCACTGTGGCTCTCACTCGCTGATCTTGAAGAGAAAGTGAATGGGCTAAACAAAGCTCGGGCTATTCTCACCACGGCCAGGAAGAAGAATCCTGGGGGGGCTGAGCTATGGTTAGCTGCTATTCGCGCTGAACTGAGGCATGACAACAAGAGAGAAGCAGAGCACTTGATGTCAAAGGCTCTGCAAGACTGTCCCAAGAGTGGTATCCTCTGGGCTGCGGACATTGAGATGGCGCCACGTCCTCGACGGAAAACAAAGAGTATTGATGCTATGAAGAAGTGTGATCGCGACCCTCATGTCACCATAGCTGTTGCCAAGCTCTTTTGGCAAGACAAGAAGGTGGAGAAAGCCAGAGCATGGTTTGAACGTGCTGTTACCGTTGGCCCAGATATTGGCGATTTCTGGGCGTTGTTCTACAAATTTGAACTTCAACATGGCTCTGATGAGGACAGGAAGGAAGTTGTGGCGAAGTGTGTAGCTTGTGAGCCGAAGCATGGCGAGAAATGGCAAGCCATCTCCAAAGCGGTTGAAAATGCTCACCAGCCTATTGAAGTTATCTTGAAGAGAGTTGTGAATGCGTTGAGCAAGGAAGAGAATTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

1029

Amino Acids

115.57

Weight (kDa)

6.86

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 102 - 266 1.8e-54 PRP1 splicing factor, N-terminal
TPR_19 PF14559 706 - 764 7.4e-06 Tetratricopeptide repeat
HAT_PRP39_N PF23240 787 - 892 3.1e-09 PRP39 N-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2780
AccB1I GGYRCC 2 cut(s) 2096, 2716
AccB7I CCANNNNNTGG 2 cut(s) 2841, 2876
AccII CGCG 3 cut(s) 156, 2610, 2772
AccIII TCCGGA 1 cut(s) 388
AclWI GGATC 5 cut(s) 399, 1034, 1047, 1643, 1813
AcoI YGGCCR 1 cut(s) 2559
AcsI RAATTY 2 cut(s) 2903, 3079
AcuI CTGAAG 3 cut(s) 683, 1013, 1085
AcyI GRCGYC 2 cut(s) 938, 2717
AfaI GTAC 3 cut(s) 506, 572, 979
AfiI CCNNNNNNNGG 9 cut(s) 247, 437, 779, 912, 2562, 2684, 2841, 2876, 2978
AjiI CACGTC 2 cut(s) 46, 2723
AjnI CCWGG 5 cut(s) 430, 1821, 2438, 2561, 2575
AjuI GAANNNNNNNTTGG 4 cut(s) 1346, 1378, 1864, 1896
Alw21I GWGCWC 1 cut(s) 2649
Alw26I GTCTC 3 cut(s) 914, 993, 1919
AlwI GGATC 5 cut(s) 399, 1034, 1047, 1643, 1813
AlwNI CAGNNNCTG 2 cut(s) 425, 1442
Ama87I CYCGRG 2 cut(s) 2408, 2541
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 6 cut(s) 87, 882, 1824, 2436, 2559, 2866
ApoI RAATTY 2 cut(s) 2903, 3079
Asp700I GAANNNNTTC 2 cut(s) 1431, 2366
AspLEI GCGC 3 cut(s) 1999, 2612, 2719
AspS9I GGNCC 3 cut(s) 88, 371, 2867
AsuHPI GGTGA 6 cut(s) 955, 977, 1630, 2545, 2776, 3014
AsuII TTCGAA 1 cut(s) 78
AvaI CYCGRG 2 cut(s) 2408, 2541
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 1253
BamHI GGATCC 1 cut(s) 1039
BanI GGYRCC 2 cut(s) 2096, 2716
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 2649
BbvCI CCTCAGC 4 cut(s) 492, 794, 1785, 2076
BccI CCATC 6 cut(s) 74, 608, 619, 1193, 2707, 3005
BceAI ACGGC 2 cut(s) 1710, 2574
BcgI CGANNNNNNTGC 2 cut(s) 1553, 1587
BciT130I CCWGG 5 cut(s) 432, 1823, 2440, 2563, 2577
BciVI GTATCC 1 cut(s) 2699
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 3 cut(s) 914, 993, 1919
BfaI CTAG 6 cut(s) 150, 1116, 1182, 1218, 1673, 2429
BfmI CTRYAG 2 cut(s) 417, 1032
BfoI RGCGCY 1 cut(s) 2720
BfuI GTATCC 1 cut(s) 2699
BlpI GCTNAGC 1 cut(s) 2586
Bme1390I CCNGG 5 cut(s) 432, 1823, 2440, 2563, 2577
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 2 cut(s) 2408, 2541
BmgBI CACGTC 2 cut(s) 46, 2723
BmgT120I GGNCC 3 cut(s) 88, 371, 2867
BmiI GGNNCC 7 cut(s) 267, 1041, 1623, 1918, 2098, 2226, 2718
BmrFI CCNGG 5 cut(s) 432, 1823, 2440, 2563, 2577
BmrI ACTGGG 2 cut(s) 354, 1135
BmsI GCATC 8 cut(s) 586, 1294, 1477, 1540, 1882, 2026, 2434, 2740
BmuI ACTGGG 2 cut(s) 354, 1135
BoxI GACNNNNGTC 1 cut(s) 959
BpiI GAAGAC 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 1596, 1628
BpmI CTGGAG 5 cut(s) 414, 1400, 1556, 1721, 2139
Bpu10I CCTNAGC 4 cut(s) 492, 794, 1785, 2076
Bpu1102I GCTNAGC 1 cut(s) 2586
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 2 cut(s) 2024, 2228
Bsa29I ATCGAT 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 513
BsaHI GRCGYC 2 cut(s) 938, 2717
BsaI GGTCTC 1 cut(s) 1919
BsaJI CCNNGG 5 cut(s) 926, 1308, 2014, 2556, 2576
BsaWI WCCGGW 1 cut(s) 388
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 9 cut(s) 247, 437, 779, 912, 2562, 2684, 2841, 2876, 2978
Bse118I RCCGGY 1 cut(s) 940
Bse1I ACTGG 4 cut(s) 349, 1141, 1428, 2461
Bse8I GATNNNNATC 1 cut(s) 513
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 5 cut(s) 432, 1823, 2440, 2563, 2577
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 5 cut(s) 926, 1308, 2014, 2556, 2576
BseGI GGATG 8 cut(s) 586, 630, 760, 1204, 1270, 1492, 1779, 2295
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 9 cut(s) 247, 437, 779, 912, 2562, 2684, 2841, 2876, 2978
BseNI ACTGG 4 cut(s) 349, 1141, 1428, 2461
BseRI GAGGAG 8 cut(s) 509, 649, 1205, 1496, 2283, 2345, 2348, 2353
BseSI GKGCMC 1 cut(s) 1253
Bsh1236I CGCG 3 cut(s) 156, 2610, 2772
Bsh1285I CGRYCG 2 cut(s) 42, 1105
BshFI GGCC 6 cut(s) 89, 884, 1826, 2438, 2561, 2868
BshNI GGYRCC 2 cut(s) 2096, 2716
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 2 cut(s) 42, 1105
BsiHKAI GWGCWC 1 cut(s) 2649
BsiHKCI CYCGRG 2 cut(s) 2408, 2541
BsiSI CCGG 3 cut(s) 389, 941, 2228
BslFI GGGAC 6 cut(s) 1434, 2014, 2051, 2287, 2457, 2661
BslI CCNNNNNNNGG 9 cut(s) 247, 437, 779, 912, 2562, 2684, 2841, 2876, 2978
BsmAI GTCTC 3 cut(s) 914, 993, 1919
BsmFI GGGAC 6 cut(s) 1434, 2014, 2051, 2287, 2457, 2661
BsmI GAATGC 2 cut(s) 2247, 3064
BsnI GGCC 6 cut(s) 89, 884, 1826, 2438, 2561, 2868
Bso31I GGTCTC 1 cut(s) 1919
BsoBI CYCGRG 2 cut(s) 2408, 2541
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 1253, 2649
Bsp13I TCCGGA 1 cut(s) 388
Bsp1720I GCTNAGC 1 cut(s) 2586
Bsp19I CCATGG 2 cut(s) 926, 2014
Bsp68I TCGCGA 1 cut(s) 2772
BspANI GGCC 6 cut(s) 89, 884, 1826, 2438, 2561, 2868
BspDI ATCGAT 1 cut(s) 38
BspEI TCCGGA 1 cut(s) 388
BspFNI CGCG 3 cut(s) 156, 2610, 2772
BspLI GGNNCC 7 cut(s) 267, 1041, 1623, 1918, 2098, 2226, 2718
BspPI GGATC 5 cut(s) 399, 1034, 1047, 1643, 1813
BspQI GCTCTTC 1 cut(s) 2003
BspT104I TTCGAA 1 cut(s) 78
BspT107I GGYRCC 2 cut(s) 2096, 2716
BspTNI GGTCTC 1 cut(s) 1919
BsrFI RCCGGY 1 cut(s) 940
BsrI ACTGG 4 cut(s) 349, 1141, 1428, 2461
BssAI RCCGGY 1 cut(s) 940
BssECI CCNNGG 5 cut(s) 926, 1308, 2014, 2556, 2576
BssNI GRCGYC 2 cut(s) 938, 2717
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 3 cut(s) 926, 1308, 2014
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 5 cut(s) 432, 1823, 2440, 2563, 2577
Bst4CI ACNGT 8 cut(s) 226, 982, 1033, 2418, 2471, 2490, 2675, 2863
BstACI GRCGYC 2 cut(s) 938, 2717
BstAPI GCANNNNNTGC 1 cut(s) 2138
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 7 cut(s) 261, 1626, 2073, 2115, 2193, 2250, 2994
BstDSI CCRYGG 3 cut(s) 926, 2014, 2556
BstF5I GGATG 8 cut(s) 586, 630, 760, 1204, 1270, 1492, 1779, 2295
BstFNI CGCG 3 cut(s) 156, 2610, 2772
BstH2I RGCGCY 1 cut(s) 2720
BstHHI GCGC 3 cut(s) 1999, 2612, 2719
BstMAI GTCTC 3 cut(s) 914, 993, 1919
BstMCI CGRYCG 2 cut(s) 42, 1105
BstNI CCWGG 5 cut(s) 432, 1823, 2440, 2563, 2577
BstNSI RCATGY 2 cut(s) 1794, 1821
BstPAI GACNNNNGTC 1 cut(s) 959
BstSCI CCNGG 5 cut(s) 430, 1821, 2438, 2561, 2575
BstSFI CTRYAG 2 cut(s) 417, 1032
BstSLI GKGCMC 1 cut(s) 1253
BstUI CGCG 3 cut(s) 156, 2610, 2772
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 3 cut(s) 391, 1039, 1805
BstXI CCANNNNNNTGG 1 cut(s) 1167
BstYI RGATCY 3 cut(s) 391, 1039, 1805
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 1 cut(s) 2699
BsuRI GGCC 6 cut(s) 89, 884, 1826, 2438, 2561, 2868
BsuTUI ATCGAT 1 cut(s) 38
BtgI CCRYGG 3 cut(s) 926, 2014, 2556
BtrI CACGTC 2 cut(s) 46, 2723
BtsCI GGATG 8 cut(s) 586, 630, 760, 1204, 1270, 1492, 1779, 2295
BtsI GCAGTG 1 cut(s) 2476
BtsIMutI CAGTG 6 cut(s) 1083, 1356, 2454, 2467, 2476, 2486
BtuMI TCGCGA 1 cut(s) 2772
Cac8I GCNNGC 7 cut(s) 261, 1626, 2073, 2115, 2193, 2250, 2994
CaiI CAGNNNCTG 2 cut(s) 425, 1442
CfoI GCGC 3 cut(s) 1999, 2612, 2719
Cfr10I RCCGGY 1 cut(s) 940
Cfr13I GGNCC 3 cut(s) 88, 371, 2867
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 946
Csp6I GTAC 3 cut(s) 505, 571, 978
CviQI GTAC 3 cut(s) 505, 571, 978
DinI GGCGCC 1 cut(s) 2718
DrdI GACNNNNNNGTC 1 cut(s) 2780
DseDI GACNNNNNNGTC 1 cut(s) 2780
EaeI YGGCCR 1 cut(s) 2559
EciI GGCGGA 2 cut(s) 61, 258
Eco130I CCWWGG 3 cut(s) 926, 1308, 2014
Eco31I GGTCTC 1 cut(s) 1919
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 3 cut(s) 683, 1013, 1085
Eco88I CYCGRG 2 cut(s) 2408, 2541
EcoRI GAATTC 1 cut(s) 3079
EcoRII CCWGG 5 cut(s) 430, 1821, 2438, 2561, 2575
EcoT14I CCWWGG 3 cut(s) 926, 1308, 2014
EgeI GGCGCC 1 cut(s) 2718
EheI GGCGCC 1 cut(s) 2718
ErhI CCWWGG 3 cut(s) 926, 1308, 2014
FaqI GGGAC 6 cut(s) 1434, 2014, 2051, 2287, 2457, 2661
FauI CCCGC 2 cut(s) 316, 2076
FauNDI CATATG 2 cut(s) 1570, 2062
FbaI TGATCA 1 cut(s) 616
FokI GGATG 8 cut(s) 593, 637, 767, 1211, 1277, 1499, 1786, 2302
FspBI CTAG 6 cut(s) 150, 1116, 1182, 1218, 1673, 2429
GlaI GCGC 3 cut(s) 1998, 2611, 2718
GsuI CTGGAG 5 cut(s) 414, 1400, 1556, 1721, 2139
HaeII RGCGCY 1 cut(s) 2720
HaeIII GGCC 6 cut(s) 89, 884, 1826, 2438, 2561, 2868
HapII CCGG 3 cut(s) 389, 941, 2228
HgaI GACGC 1 cut(s) 946
HhaI GCGC 3 cut(s) 1999, 2612, 2719
Hin1I GRCGYC 2 cut(s) 938, 2717
Hin6I GCGC 3 cut(s) 1997, 2610, 2717
HinP1I GCGC 3 cut(s) 1997, 2610, 2717
HindIII AAGCTT 5 cut(s) 995, 1278, 2204, 2384, 2445
HpaII CCGG 3 cut(s) 389, 941, 2228
HphI GGTGA 6 cut(s) 955, 977, 1630, 2545, 2776, 3014
Hpy166II GTNNAC 2 cut(s) 49, 351
Hpy8I GTNNAC 2 cut(s) 49, 351
Hpy99I CGWCG 2 cut(s) 47, 2733
HpyCH4III ACNGT 8 cut(s) 226, 982, 1033, 2418, 2471, 2490, 2675, 2863
HpyCH4IV ACGT 6 cut(s) 45, 97, 521, 2325, 2722, 2851
HpySE526I ACGT 6 cut(s) 45, 97, 521, 2325, 2722, 2851
Hsp92I GRCGYC 2 cut(s) 938, 2717
HspAI GCGC 3 cut(s) 1997, 2610, 2717
KasI GGCGCC 1 cut(s) 2716
Kpn2I TCCGGA 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 616
LguI GCTCTTC 1 cut(s) 2003
LweI GCATC 8 cut(s) 586, 1294, 1477, 1540, 1882, 2026, 2434, 2740
MaeI CTAG 6 cut(s) 150, 1116, 1182, 1218, 1673, 2429
MaeII ACGT 6 cut(s) 45, 97, 521, 2325, 2722, 2851
MaeIII GTNAC 5 cut(s) 125, 943, 2056, 2782, 2857
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 3 cut(s) 391, 1039, 1805
MhlI GDGCHC 2 cut(s) 1253, 2649
Mly113I GGCGCC 1 cut(s) 2717
MlyI GAGTC 6 cut(s) 617, 1141, 1433, 1726, 2029, 2036
MmeI TCCRAC 3 cut(s) 897, 1344, 1783
MroI TCCGGA 1 cut(s) 388
MroXI GAANNNNTTC 2 cut(s) 1431, 2366
MseI TTAA 7 cut(s) 1055, 1209, 1332, 1833, 1989, 2349, 2393
MslI CAYNNNNRTG 2 cut(s) 1697, 2711
MspA1I CMGCKG 3 cut(s) 422, 908, 1643
MspI CCGG 3 cut(s) 389, 941, 2228
MspR9I CCNGG 5 cut(s) 432, 1823, 2440, 2563, 2577
MunI CAATTG 1 cut(s) 83
Mva1269I GAATGC 2 cut(s) 2247, 3064
MvaI CCWGG 5 cut(s) 432, 1823, 2440, 2563, 2577
MvnI CGCG 3 cut(s) 156, 2610, 2772
NarI GGCGCC 1 cut(s) 2717
NcoI CCATGG 2 cut(s) 926, 2014
NdeI CATATG 2 cut(s) 1570, 2062
NlaIV GGNNCC 7 cut(s) 267, 1041, 1623, 1918, 2098, 2226, 2718
NmuCI GTSAC 2 cut(s) 943, 2782
NruI TCGCGA 1 cut(s) 2772
NspI RCATGY 2 cut(s) 1794, 1821
NspV TTCGAA 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 2408
PciSI GCTCTTC 1 cut(s) 2003
PctI GAATGC 2 cut(s) 2247, 3064
PdmI GAANNNNTTC 2 cut(s) 1431, 2366
PflFI GACNNNGTC 1 cut(s) 1141
PflMI CCANNNNNTGG 2 cut(s) 2841, 2876
PfoI TCCNGGA 1 cut(s) 430
Ple19I CGATCG 2 cut(s) 42, 1105
PleI GAGTC 6 cut(s) 616, 1140, 1433, 1726, 2028, 2035
PluTI GGCGCC 1 cut(s) 2720
PpsI GAGTC 6 cut(s) 616, 1140, 1433, 1726, 2028, 2035
PshAI GACNNNNGTC 1 cut(s) 959
Psp6I CCWGG 5 cut(s) 430, 1821, 2438, 2561, 2575
PspGI CCWGG 5 cut(s) 430, 1821, 2438, 2561, 2575
PspN4I GGNNCC 7 cut(s) 267, 1041, 1623, 1918, 2098, 2226, 2718
PspPI GGNCC 3 cut(s) 88, 371, 2867
PspXI VCTCGAGB 1 cut(s) 2408
PstNI CAGNNNCTG 2 cut(s) 425, 1442
PsuI RGATCY 3 cut(s) 391, 1039, 1805
PsyI GACNNNGTC 1 cut(s) 1141
PvuI CGATCG 2 cut(s) 42, 1105
RruI TCGCGA 1 cut(s) 2772
RsaI GTAC 3 cut(s) 506, 572, 979
RsaNI GTAC 3 cut(s) 505, 571, 978
RseI CAYNNNNRTG 2 cut(s) 1697, 2711
SapI GCTCTTC 1 cut(s) 2003
SaqAI TTAA 7 cut(s) 1055, 1209, 1332, 1833, 1989, 2349, 2393
Sau96I GGNCC 3 cut(s) 88, 371, 2867
SchI GAGTC 6 cut(s) 617, 1141, 1433, 1726, 2029, 2036
ScrFI CCNGG 5 cut(s) 432, 1823, 2440, 2563, 2577
SduI GDGCHC 2 cut(s) 1253, 2649
SfaNI GCATC 8 cut(s) 586, 1294, 1477, 1540, 1882, 2026, 2434, 2740
SfcI CTRYAG 2 cut(s) 417, 1032
SfoI GGCGCC 1 cut(s) 2718
Sfr274I CTCGAG 1 cut(s) 2408
SfuI TTCGAA 1 cut(s) 78
SgrAI CRCCGGYG 1 cut(s) 940
SinI GGWCC 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 2408
SmiMI CAYNNNNRTG 2 cut(s) 1697, 2711
SmlI CTYRAG 3 cut(s) 2003, 2207, 2408
SmoI CTYRAG 3 cut(s) 2003, 2207, 2408
SspDI GGCGCC 1 cut(s) 2716
SspMI CTAG 6 cut(s) 150, 1116, 1182, 1218, 1673, 2429
StyD4I CCNGG 5 cut(s) 430, 1821, 2438, 2561, 2575
StyI CCWWGG 3 cut(s) 926, 1308, 2014
TaaI ACNGT 8 cut(s) 226, 982, 1033, 2418, 2471, 2490, 2675, 2863
TaiI ACGT 6 cut(s) 48, 100, 524, 2328, 2725, 2854
TaqII GACCGA 2 cut(s) 393, 1776
TauI GCSGC 5 cut(s) 156, 266, 425, 908, 1997
Tru1I TTAA 7 cut(s) 1055, 1209, 1332, 1833, 1989, 2349, 2393
Tru9I TTAA 7 cut(s) 1055, 1209, 1332, 1833, 1989, 2349, 2393
TscAI CASTG 6 cut(s) 1090, 1356, 2461, 2474, 2483, 2493
TseFI GTSAC 2 cut(s) 943, 2782
Tsp45I GTSAC 2 cut(s) 943, 2782
TspDTI ATGAA 7 cut(s) 498, 1088, 1104, 1692, 2306, 2367, 2771
TspGWI ACGGA 3 cut(s) 125, 297, 2746
TspRI CASTG 6 cut(s) 1090, 1356, 2461, 2474, 2483, 2493
Tth111I GACNNNGTC 1 cut(s) 1141
Van91I CCANNNNNTGG 2 cut(s) 2841, 2876
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 2 cut(s) 2903, 3079
XbaI TCTAGA 1 cut(s) 2428
XceI RCATGY 2 cut(s) 1794, 1821
XhoI CTCGAG 1 cut(s) 2408
XmnI GAANNNNTTC 2 cut(s) 1431, 2366
XspI CTAG 6 cut(s) 150, 1116, 1182, 1218, 1673, 2429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.