Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

52812228 .. 52822638

Gene Structure 10411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG386700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGGAAGGAGAAGAGCGAGTGGCGACGGAGCCTCCCAAAATTCACCGCCTAGACGAGTCCGTAGTGAACCGAATCGCCGCCGGTGAGGTCATCCAACGCCCCGTCTCTGCCGTCAAGGAGCTCGTCGAGAACAGCCTCGACGCCCACTCCTCCTCCATTAACGTCGTCGTCAAGGACGGCGGCCTCAAGCTCATCCAAGTCTCCGACGACGGCCACGGAATCCGATCTGCTGTAGTAGGAGGACTTGCCGATAATGTGCGAGCGGCATACGACGTCGAAATTGTCCATGGTTATAGGGTCTCCTATAAAGATGGAGTGATGGAGCATGAGCCGAAGGCGTGCGCTGCCATAAAAGGAACTCAGATAATGATTGAGAACTTATTCTATAACATGTCTGCCCGGAGAAAGAATCTGCAAAACTCTGCTGATGATTATTCAAAGATTGTAGATTTGTTAAGCCGGTTTGCCATTCATCACACAAGTGTTAGCTTCTCCTGCAGAAAGCATGGAGCCGGTAGAGCAGATGTTAGTTCTGTTGCCACATTATCAAGAATTGATGCGATTCGTTCAGTTTATGGGGTGTCAGTTGCCTGCAGTCTGATGAAAGTAGAAGCTTTGGACAATGATCCGTCGAGCTCAGTTTTCCAGATGGATGGCTTTATCTCCAATTCCGAATATGTTGCGAAGAAGATAACTATGGTGCTTTTTATAAACGATAGATTGGTGGATTGCACTGCATTGAAGAGAGCTCTGGAAATTGTTTATGCTGCTACATTGCCGAAAGCATCAAAACCCTTCATATACATGTCAATTGTATTACCACCTGAACGTGTTGATGTGAATGTTCACCCGACAAAGAGGGAGGTGAGTCTTCTGAATCAGGAAGTCATCATTGAGAAGATACAGTCAGTGGTTGAATCAAGATTGAGAAGCTCCAATGAGACACAGATATTTCAGGGGCAGACAGTTGAACCACCTTCATCCAGCCAAATGATTTCTAGCAAGGATTCAAATCGAAATCCTTTGGCATCTGGATCAAAATCACAAAAGGTTCCAGTGAATAAAATGGTCAGAACAGATTCATCGGATCCTGCTGGAAGGTTGCATATTTACTTGCACGGAGAGCCTCGTGGCCATCTTGAAAAGAATACCAGCTTGACTGCTGTTAGATCGTCTGTTAGACAAAGAAGGAACCCAAAGGAAATGGCTGATCTGAGTAGCATTCAGGAGCTTATTGCTGAAATTGATAGCAATTGTCATTCTGGTATGTTAGACATTGTGAGAAACTGCACATACATTGGAATGGCAGATGACGTCTTTGCATTGCTTCAGCATGATACACACCTCTACCTTGCAAATGTAGTAAGCTTGAGCAAAGAGCTCATGTATCAGCAAGTTCTACGTCGATTTGCTCATTTTAATGCTATACAATTAAGTAACCCAGCCCCGCTGAAGGAGTTGATTGTGTTGGCACTGAAAGAGGGGGACACAGATCCAGAATCCACTGAGAATGATGAACTAAATGAGAAGATTGCAGAAATGAATACAGAACTACTTGAGCAAAAGGCTGATCTAGTAGAGGAGTACTTTTCCATTCACATAGATAAAGATGGAAATTTGTCCAGGCTTCCGGTAATACTTGACCAATACACACCTGACATGGATCGTGTCCCAGAATTTGTGCTTTGTTTGGGCAACGATGTTGATTGGGAAGAAGAGAAAAAATGCTTCCAAGTAATTTCAGCTGCACTTGGGAACTTTTATGCCATGCATCCTCCTATATTACCCAACCCATCTGGTGATGGTTTGCAATTTTACCAAAAAAGGAAGTTGGTCAGGAATAATGAAGGAAGTCTCTCTTGCAATACAGCTGCGGATGATATGATGATGGAGGATGAAATCCAGCATGAACTAGTTGCAGAGGCAGAGACTGCATGGGCACAGCGCGAATGGTTGATCCAGCATGTATTGTTTCCATCAATGAGGCTCTTTTTTAAGCCACCAAATTCTATGGCTACAAATGGAACATTTGTTCGAGTTGCTTCACTAGAAAAGCTGTACAGGATTTTTGAAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

693

Amino Acids

77.45

Weight (kDa)

5.58

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	36 - 76	2.6e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	188 - 309	5.4e-28	DNA mismatch repair protein, C-terminal domain
Mlh1_C	PF16413	405 - 693	8.3e-84	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AatII	GACGTC	2 cut(s)	276, 1317
AccBSI	CCGCTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	1947
AciI	CCGC	6 cut(s)	46, 78, 180, 263, 1448, 1874
AclWI	GGATC	7 cut(s)	620, 1042, 1082, 1095, 1487, 1671, 1951
AcoI	YGGCCR	2 cut(s)	211, 1132
AcsI	RAATTY	4 cut(s)	39, 1615, 1676, 2005
AcuI	CTGAAG	2 cut(s)	1313, 1472
AcyI	GRCGYC	3 cut(s)	141, 273, 1314
AfaI	GTAC	2 cut(s)	1586, 2060
AfiI	CCNNNNNNNGG	1 cut(s)	1453
AflIII	ACRYGT	3 cut(s)	390, 804, 829
AgsI	TTSAA	7 cut(s)	438, 742, 917, 971, 1011, 1142, 2072
AhlI	ACTAGT	1 cut(s)	1912
AjnI	CCWGG	1 cut(s)	1622
AleI	CACNNNNGTG	1 cut(s)	480
AloI	GAACNNNNNNTCC	2 cut(s)	2016, 2048
Alw21I	GWGCWC	4 cut(s)	123, 638, 751, 1383
Alw26I	GTCTC	6 cut(s)	109, 205, 304, 935, 1859, 1922
AlwI	GGATC	7 cut(s)	620, 1042, 1082, 1095, 1487, 1671, 1951
AlwNI	CAGNNNCTG	1 cut(s)	1931
AoxI	GGCC	3 cut(s)	181, 211, 1132
ApeKI	GCWGC	4 cut(s)	344, 767, 1745, 1871
ApoI	RAATTY	4 cut(s)	39, 1615, 1676, 2005
Asp700I	GAANNNNTTC	2 cut(s)	380, 1078
AspLEI	GCGC	2 cut(s)	344, 1947
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	5 cut(s)	35, 95, 839, 877, 1811
BaeGI	GKGCMC	1 cut(s)	1942
BalI	TGGCCA	1 cut(s)	1134
BamHI	GGATCC	1 cut(s)	1087
BanII	GRGCYC	4 cut(s)	123, 638, 751, 1383
BauI	CACGAG	1 cut(s)	1128
BbsI	GAAGAC	1 cut(s)	863
Bbv12I	GWGCWC	4 cut(s)	123, 638, 751, 1383
BbvI	GCAGC	4 cut(s)	331, 754, 1732, 1858
BceAI	ACGGC	3 cut(s)	95, 193, 226
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	1 cut(s)	1624
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	6 cut(s)	109, 205, 304, 935, 1859, 1922
BcuI	ACTAGT	1 cut(s)	1912
BfaI	CTAG	5 cut(s)	50, 999, 1574, 1913, 2048
BfmI	CTRYAG	3 cut(s)	231, 496, 592
BisI	GCNGC	7 cut(s)	78, 181, 264, 345, 768, 1746, 1872
BlsI	GCNGC	7 cut(s)	79, 182, 265, 346, 769, 1747, 1873
BmcAI	AGTACT	1 cut(s)	1586
Bme1390I	CCNGG	2 cut(s)	400, 1624
BmiI	GGNNCC	5 cut(s)	30, 511, 1053, 1089, 1193
BmrFI	CCNGG	2 cut(s)	400, 1624
BmsI	GCATC	5 cut(s)	547, 794, 1037, 1780, 2066
BpiI	GAAGAC	1 cut(s)	863
BpuEI	CTTGAG	3 cut(s)	170, 1390, 1577
BpuMI	CCSGG	1 cut(s)	400
BsaBI	GATNNNNATC	2 cut(s)	1011, 1039
BsaHI	GRCGYC	3 cut(s)	141, 273, 1314
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	214, 286
BsaWI	WCCGGW	1 cut(s)	1630
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 131, 137, 161, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	1453
Bse118I	RCCGGY	3 cut(s)	80, 459, 512
Bse1I	ACTGG	1 cut(s)	1055
Bse3DI	GCAATG	2 cut(s)	773, 1322
Bse8I	GATNNNNATC	2 cut(s)	1011, 1039
BseBI	CCWGG	1 cut(s)	1624
BseDI	CCNNGG	2 cut(s)	214, 286
BseGI	GGATG	7 cut(s)	90, 192, 658, 980, 1771, 1882, 1900
BseJI	GATNNNNATC	2 cut(s)	1011, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	1453
BseMI	GCAATG	2 cut(s)	773, 1322
BseMII	CTCAG	4 cut(s)	374, 651, 1205, 1497
BseNI	ACTGG	1 cut(s)	1055
BseRI	GAGGAG	3 cut(s)	139, 142, 1595
BseSI	GKGCMC	1 cut(s)	1942
BseXI	GCAGC	4 cut(s)	331, 754, 1732, 1858
BseYI	CCCAGC	1 cut(s)	1441
BsgI	GTGCAG	2 cut(s)	1273, 1731
Bsh1236I	CGCG	1 cut(s)	1947
BshFI	GGCC	3 cut(s)	183, 213, 1134
BsiHKAI	GWGCWC	4 cut(s)	123, 638, 751, 1383
BsiSI	CCGG	5 cut(s)	81, 400, 460, 513, 1631
BslFI	GGGAC	2 cut(s)	1499, 1655
BslI	CCNNNNNNNGG	1 cut(s)	1453
BsmAI	GTCTC	6 cut(s)	109, 205, 304, 935, 1859, 1922
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	1499, 1655
BsmI	GAATGC	1 cut(s)	1221
BsnI	GGCC	3 cut(s)	183, 213, 1134
Bso31I	GGTCTC	1 cut(s)	304
Bsp1286I	GDGCHC	5 cut(s)	123, 638, 751, 1383, 1942
Bsp1407I	TGTACA	1 cut(s)	2058
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	6 cut(s)	46, 78, 180, 263, 1448, 1874
BspANI	GGCC	3 cut(s)	183, 213, 1134
BspCNI	CTCAG	4 cut(s)	373, 650, 1206, 1498
BspFNI	CGCG	1 cut(s)	1947
BspLI	GGNNCC	5 cut(s)	30, 511, 1053, 1089, 1193
BspMAI	CTGCAG	2 cut(s)	500, 596
BspPI	GGATC	7 cut(s)	620, 1042, 1082, 1095, 1487, 1671, 1951
BspQI	GCTCTTC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	263
BsrDI	GCAATG	2 cut(s)	773, 1322
BsrFI	RCCGGY	3 cut(s)	80, 459, 512
BsrGI	TGTACA	1 cut(s)	2058
BsrI	ACTGG	1 cut(s)	1055
BssAI	RCCGGY	3 cut(s)	80, 459, 512
BssECI	CCNNGG	2 cut(s)	214, 286
BssNI	GRCGYC	3 cut(s)	141, 273, 1314
BssSI	CACGAG	1 cut(s)	1128
BssT1I	CCWWGG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	1128
Bst2UI	CCWGG	1 cut(s)	1624
Bst4CI	ACNGT	2 cut(s)	906, 967
Bst6I	CTCTTC	3 cut(s)	6, 737, 1710
BstACI	GRCGYC	3 cut(s)	141, 273, 1314
BstAPI	GCANNNNNTGC	1 cut(s)	1931
BstAUI	TGTACA	1 cut(s)	2058
BstC8I	GCNNGC	3 cut(s)	261, 340, 592
BstDEI	CTNAG	4 cut(s)	360, 637, 1214, 1506
BstDSI	CCRYGG	2 cut(s)	214, 286
BstF5I	GGATG	7 cut(s)	90, 192, 658, 980, 1771, 1882, 1900
BstFNI	CGCG	1 cut(s)	1947
BstHHI	GCGC	2 cut(s)	344, 1947
BstMAI	GTCTC	6 cut(s)	109, 205, 304, 935, 1859, 1922
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 495, 518, 1123, 1931
BstNI	CCWGG	1 cut(s)	1624
BstNSI	RCATGY	3 cut(s)	394, 808, 1967
BstSCI	CCNGG	2 cut(s)	398, 1622
BstSFI	CTRYAG	3 cut(s)	231, 496, 592
BstSLI	GKGCMC	1 cut(s)	1942
BstUI	CGCG	1 cut(s)	1947
BstV1I	GCAGC	4 cut(s)	331, 754, 1732, 1858
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	2 cut(s)	1087, 1492
BstXI	CCANNNNNNTGG	1 cut(s)	653
BstYI	RGATCY	2 cut(s)	1087, 1492
BsuRI	GGCC	3 cut(s)	183, 213, 1134
BtgI	CCRYGG	2 cut(s)	214, 286
BtsCI	GGATG	7 cut(s)	90, 192, 658, 980, 1771, 1882, 1900
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	5 cut(s)	732, 915, 1062, 1472, 1503
Cac8I	GCNNGC	3 cut(s)	261, 340, 592
CaiI	CAGNNNCTG	1 cut(s)	1931
CfoI	GCGC	2 cut(s)	344, 1947
Cfr10I	RCCGGY	3 cut(s)	80, 459, 512
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	1585, 2059
CviQI	GTAC	2 cut(s)	1585, 2059
DdeI	CTNAG	4 cut(s)	360, 637, 1214, 1506
EaeI	YGGCCR	2 cut(s)	211, 1132
Eam1104I	CTCTTC	3 cut(s)	6, 737, 1710
EarI	CTCTTC	3 cut(s)	6, 737, 1710
Ecl136II	GAGCTC	4 cut(s)	121, 636, 749, 1381
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	4 cut(s)	123, 638, 751, 1383
Eco31I	GGTCTC	1 cut(s)	304
Eco53kI	GAGCTC	4 cut(s)	121, 636, 749, 1381
Eco57I	CTGAAG	2 cut(s)	1313, 1472
EcoICRI	GAGCTC	4 cut(s)	121, 636, 749, 1381
EcoRII	CCWGG	1 cut(s)	1622
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	1773
EcoT38I	GRGCYC	4 cut(s)	123, 638, 751, 1383
ErhI	CCWWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	109
FalI	AAGNNNNNCTT	2 cut(s)	1843, 1875
FaqI	GGGAC	2 cut(s)	1499, 1655
FauI	CCCGC	1 cut(s)	1455
Fnu4HI	GCNGC	7 cut(s)	78, 181, 264, 345, 768, 1746, 1872
FokI	GGATG	7 cut(s)	77, 179, 665, 967, 1758, 1889, 1907
FriOI	GRGCYC	4 cut(s)	123, 638, 751, 1383
Fsp4HI	GCNGC	7 cut(s)	78, 181, 264, 345, 768, 1746, 1872
FspBI	CTAG	5 cut(s)	50, 999, 1574, 1913, 2048
GlaI	GCGC	2 cut(s)	343, 1946
GluI	GCNGC	7 cut(s)	78, 181, 264, 345, 768, 1746, 1872
GsaI	CCCAGC	1 cut(s)	1445
HaeIII	GGCC	3 cut(s)	183, 213, 1134
HapII	CCGG	5 cut(s)	81, 400, 460, 513, 1631
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	344, 1947
Hin1I	GRCGYC	3 cut(s)	141, 273, 1314
Hin6I	GCGC	2 cut(s)	342, 1945
HinP1I	GCGC	2 cut(s)	342, 1945
HindIII	AAGCTT	2 cut(s)	612, 1366
HpaII	CCGG	5 cut(s)	81, 400, 460, 513, 1631
HphI	GGTGA	5 cut(s)	35, 95, 839, 877, 1811
Hpy166II	GTNNAC	2 cut(s)	67, 847
Hpy188I	TCNGA	9 cut(s)	205, 224, 363, 600, 673, 876, 1073, 1087, 1215
Hpy8I	GTNNAC	2 cut(s)	67, 847
HpyAV	CCTTC	7 cut(s)	328, 805, 987, 1092, 1182, 1447, 1841
HpyCH4III	ACNGT	2 cut(s)	906, 967
HpyCH4IV	ACGT	5 cut(s)	162, 273, 829, 1314, 1402
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 495, 518, 1123, 1931
HpyF3I	CTNAG	4 cut(s)	360, 637, 1214, 1506
HpySE526I	ACGT	5 cut(s)	162, 273, 829, 1314, 1402
Hsp92I	GRCGYC	3 cut(s)	141, 273, 1314
HspAI	GCGC	2 cut(s)	342, 1945
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	6 cut(s)	28, 118, 322, 509, 938, 1228
Lsp1109I	GCAGC	4 cut(s)	331, 754, 1732, 1858
LweI	GCATC	5 cut(s)	547, 794, 1037, 1780, 2066
MaeI	CTAG	5 cut(s)	50, 999, 1574, 1913, 2048
MaeII	ACGT	5 cut(s)	162, 273, 829, 1314, 1402
MaeIII	GTNAC	1 cut(s)	1436
MbiI	CCGCTC	1 cut(s)	263
MboII	GAAGA	9 cut(s)	23, 697, 700, 754, 863, 910, 1540, 1724, 1727
MfeI	CAATTG	2 cut(s)	810, 1252
MflI	RGATCY	2 cut(s)	1087, 1492
MhlI	GDGCHC	5 cut(s)	123, 638, 751, 1383, 1942
MlsI	TGGCCA	1 cut(s)	1134
MluNI	TGGCCA	1 cut(s)	1134
MlyI	GAGTC	2 cut(s)	65, 877
MmeI	TCCRAC	2 cut(s)	118, 228
Mox20I	TGGCCA	1 cut(s)	1134
Mph1103I	ATGCAT	1 cut(s)	1773
MroXI	GAANNNNTTC	2 cut(s)	380, 1078
MscI	TGGCCA	1 cut(s)	1134
MseI	TTAA	5 cut(s)	159, 455, 1419, 1433, 1995
MslI	CAYNNNNRTG	4 cut(s)	480, 803, 1301, 1419
Msp20I	TGGCCA	1 cut(s)	1134
MspA1I	CMGCKG	3 cut(s)	1450, 1745, 1871
MspI	CCGG	5 cut(s)	81, 400, 460, 513, 1631
MspR9I	CCNGG	2 cut(s)	400, 1624
MunI	CAATTG	2 cut(s)	810, 1252
Mva1269I	GAATGC	1 cut(s)	1221
MvaI	CCWGG	1 cut(s)	1624
MvnI	CGCG	1 cut(s)	1947
MwoI	GCNNNNNNNGC	5 cut(s)	344, 495, 518, 1123, 1931
NciI	CCSGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	286
NlaIV	GGNNCC	5 cut(s)	30, 511, 1053, 1089, 1193
NsiI	ATGCAT	1 cut(s)	1773
NspI	RCATGY	3 cut(s)	394, 808, 1967
OliI	CACNNNNGTG	1 cut(s)	480
PciI	ACATGT	2 cut(s)	390, 804
PciSI	GCTCTTC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	1221
PdmI	GAANNNNTTC	2 cut(s)	380, 1078
PfeI	GAWTC	9 cut(s)	72, 219, 409, 562, 877, 917, 1007, 1079, 1499
PkrI	GCNGC	7 cut(s)	79, 182, 265, 346, 769, 1747, 1873
PleI	GAGTC	2 cut(s)	64, 876
PpsI	GAGTC	2 cut(s)	64, 876
PscI	ACATGT	2 cut(s)	390, 804
PsiI	TTATAA	1 cut(s)	710
Psp124BI	GAGCTC	4 cut(s)	123, 638, 751, 1383
Psp6I	CCWGG	1 cut(s)	1622
PspFI	CCCAGC	1 cut(s)	1441
PspGI	CCWGG	1 cut(s)	1622
PspN4I	GGNNCC	5 cut(s)	30, 511, 1053, 1089, 1193
PstI	CTGCAG	2 cut(s)	500, 596
PstNI	CAGNNNCTG	1 cut(s)	1931
PsuI	RGATCY	2 cut(s)	1087, 1492
PvuII	CAGCTG	2 cut(s)	1745, 1871
RsaI	GTAC	2 cut(s)	1586, 2060
RsaNI	GTAC	2 cut(s)	1585, 2059
RseI	CAYNNNNRTG	4 cut(s)	480, 803, 1301, 1419
SacI	GAGCTC	4 cut(s)	123, 638, 751, 1383
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	5 cut(s)	159, 455, 1419, 1433, 1995
SatI	GCNGC	7 cut(s)	78, 181, 264, 345, 768, 1746, 1872
ScaI	AGTACT	1 cut(s)	1586
SchI	GAGTC	2 cut(s)	65, 877
ScrFI	CCNGG	2 cut(s)	400, 1624
SduI	GDGCHC	5 cut(s)	123, 638, 751, 1383, 1942
SfaNI	GCATC	5 cut(s)	547, 794, 1037, 1780, 2066
SfcI	CTRYAG	3 cut(s)	231, 496, 592
SgrAI	CRCCGGYG	1 cut(s)	80
SmiMI	CAYNNNNRTG	4 cut(s)	480, 803, 1301, 1419
SmlI	CTYRAG	3 cut(s)	185, 1369, 1556
SmoI	CTYRAG	3 cut(s)	185, 1369, 1556
SpeI	ACTAGT	1 cut(s)	1912
SsiI	CCGC	6 cut(s)	46, 78, 180, 263, 1448, 1874
SspMI	CTAG	5 cut(s)	50, 999, 1574, 1913, 2048
SstI	GAGCTC	4 cut(s)	123, 638, 751, 1383
StyD4I	CCNGG	2 cut(s)	398, 1622
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	906, 967
TaiI	ACGT	5 cut(s)	165, 276, 832, 1317, 1405
TaqI	TCGA	7 cut(s)	126, 138, 276, 632, 1015, 1405, 2035
TatI	WGTACW	2 cut(s)	1584, 2058
TauI	GCSGC	3 cut(s)	80, 183, 266
TfiI	GAWTC	9 cut(s)	72, 219, 409, 562, 877, 917, 1007, 1079, 1499
Tru1I	TTAA	5 cut(s)	159, 455, 1419, 1433, 1995
Tru9I	TTAA	5 cut(s)	159, 455, 1419, 1433, 1995
TscAI	CASTG	5 cut(s)	739, 915, 1062, 1479, 1510
TseI	GCWGC	4 cut(s)	344, 767, 1745, 1871
TspGWI	ACGGA	5 cut(s)	41, 49, 231, 618, 1134
TspRI	CASTG	5 cut(s)	739, 915, 1062, 1479, 1510
XapI	RAATTY	4 cut(s)	39, 1615, 1676, 2005
XceI	RCATGY	3 cut(s)	394, 808, 1967
XmnI	GAANNNNTTC	2 cut(s)	380, 1078
XspI	CTAG	5 cut(s)	50, 999, 1574, 1913, 2048
ZraI	GACGTC	2 cut(s)	274, 1315
ZrmI	AGTACT	1 cut(s)	1586
Zsp2I	ATGCAT	1 cut(s)	1773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.