AT4G10720

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003301
Physical Location & Seq
Forward (+)
6607797 .. 6609559
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10720.1

Sequence Viewer

Length: 1338 bp
ATGGATCCAAGATTGATCGTAGCTACTCAAATCGGAAGCATCGATGAATTGTATGCTCATATCCATGAGAATCCATACATTCTTGAAATCATTGATGCAATACCTTTCATCAACACTCCTCTCCATATAGCTTCTGCTTCTGGTAACCTTTCTTTTGCCATGGAGCTGATGAATCTTAAGCCGTCTTTCGCGAGAAAACTTAACACATACGGGTTAAGTCCATTGCATCTTGCTATAGAGGAAGGTCAAACACGGTTGGTTCTAAGTTTACTCAAGGTTGATTCTGACCTTGTTCGCCTTCGAGGAAGAGAAGGTATGACGCCGTTTCATCAAGTAGTAAGAAGAGGAGAAACTGATCTTATGACAGAGTTCCTCTTAGCTTGTCCTGGTTGCATTAAAGATGCAAACGTGAACGGTGAAACCGCTCTACACATCGCGGTTTCAAACGATAGATACGAAGAGCTTGAAGTACTCTTGGGATGGGTACAAAGACTTCGTCAAACAGACGCTGAATCGTTAGAGATGCAGTTTTTGAACAAACGTGATCAAGACGGTAACACAGCCTTACACATAGCAGCATATCAGAACAGATTCAAAGCAGTAAAGATATTGGTAAAATGTTCTGCAGTAAACCGGAACATTCATAACCGGACAGGTTTAACCGCCCTAGATATCTTACATAACCAGAGAGATCATCACGCAAACAGTAATATCGAAAACATAATCCGAAAATGGGGAGGTAAGAGTGGAAACTCTCTACCAAAATCCAAGAAAGTGTCGGAAATCTTGAGATCTCCGATTAGTTTCACCGAGCATTTGTTCACGCAAACAGCCCGGTATAGGAACCAGACTTCTGAAGGAACACGCAGCGCGCTTCTAGTGATAGCCGCGCTGATAATCACAGCTACTTATCAAACAGCTTTGCAGCCACCAGGAGGTGTATATCAAGAAAATGCAGCAGAAGAAAGTAAAAAGAGTGTTGGTACTGTTGTGATGAGTCATAAATATTTCTTTGTTCTTCGAGGTGTGAATACTATGGCTTTCGTTGGAGCGATTTTCATGGCGTTTTGTTTGTTACCAGCTGGTGAAGGCTATGTATGGTGGTTTCTTTGGATAGCAGTGCCATTGTATGTTTCTTACTTGGTTTCGATGTCGGTTATATCTCCAGATACAGTGTGGTACGTCTCTACTAATGCAGGCTCGGTTATAATCGTTGTTTTCGCTTACATGGTTGTGTTTTTCTTGCGGTGGAAGCGGTCTAAGAAGAAGGTACCTGGAACTAGTAGTGAGTTGATTCTTGAAGGCTTGACAACTCTGGATTTAGCTAAAGGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

445

Amino Acids

49.71

Weight (kDa)

8.86

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 32 - 96 4.6e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 89 - 159 5.7e-08 Ankyrin repeats (3 copies)
Ank_5 PF13857 178 - 225 5.8e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 179 - 224 1.9e-06 Ankyrin repeats (3 copies)
PGG PF13962 286 - 385 1.4e-11 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1208
Acc65I GGTACC 1 cut(s) 1270
AccB1I GGYRCC 1 cut(s) 1270
AccBSI CCGCTC 1 cut(s) 425
AccII CGCG 4 cut(s) 191, 437, 872, 890
AciI CCGC 6 cut(s) 423, 437, 663, 888, 1246, 1255
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 5 cut(s) 471, 486, 985, 1181, 1272
AfiI CCNNNNNNNGG 3 cut(s) 733, 840, 935
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 6 cut(s) 86, 444, 467, 535, 595, 1301
AhlI ACTAGT 1 cut(s) 1280
AjnI CCWGG 3 cut(s) 385, 931, 1273
AluBI AGCT 9 cut(s) 23, 131, 166, 380, 463, 905, 920, 1082, 1325
AluI AGCT 9 cut(s) 23, 131, 166, 380, 463, 905, 920, 1082, 1325
Alw26I GTCTC 1 cut(s) 1189
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 509
ApeKI GCWGC 4 cut(s) 575, 867, 925, 956
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
Asp700I GAANNNNTTC 1 cut(s) 590
Asp718I GGTACC 1 cut(s) 1270
AspLEI GCGC 3 cut(s) 872, 874, 892
AsuC2I CCSGG 1 cut(s) 835
AsuHPI GGTGA 3 cut(s) 428, 799, 1097
BaeI ACNNNNGTAYC 2 cut(s) 975, 1008
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 1270
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbvI GCAGC 4 cut(s) 587, 879, 937, 968
BccI CCATC 1 cut(s) 474
BceAI ACGGC 2 cut(s) 166, 307
BciT130I CCWGG 3 cut(s) 387, 933, 1275
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 1189
BcuI ACTAGT 1 cut(s) 1280
BfaI CTAG 3 cut(s) 668, 878, 1281
BfmI CTRYAG 2 cut(s) 234, 624
BfrI CTTAAG 1 cut(s) 176
BglII AGATCT 1 cut(s) 791
BisI GCNGC 5 cut(s) 576, 868, 888, 926, 957
BlsI GCNGC 5 cut(s) 577, 869, 889, 927, 958
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 4 cut(s) 387, 835, 933, 1275
BmiI GGNNCC 3 cut(s) 6, 845, 1272
BmrFI CCNGG 4 cut(s) 387, 835, 933, 1275
BmsI GCATC 5 cut(s) 48, 85, 235, 391, 513
BpmI CTGGAG 1 cut(s) 1149
BpuEI CTTGAG 2 cut(s) 257, 808
BpuMI CCSGG 1 cut(s) 835
Bsa29I ATCGAT 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 159
BsaWI WCCGGW 2 cut(s) 633, 648
Bsc4I CCNNNNNNNGG 3 cut(s) 733, 840, 935
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 3 cut(s) 387, 933, 1275
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 3 cut(s) 733, 840, 935
BseMI GCAATG 1 cut(s) 221
BsePI GCGCGC 1 cut(s) 870
BseRI GAGGAG 2 cut(s) 108, 360
BseXI GCAGC 4 cut(s) 587, 879, 937, 968
Bsh1236I CGCG 4 cut(s) 191, 437, 872, 890
BshNI GGYRCC 1 cut(s) 1270
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 3 cut(s) 634, 649, 835
BslI CCNNNNNNNGG 3 cut(s) 733, 840, 935
BsmAI GTCTC 1 cut(s) 1189
BsmBI CGTCTC 1 cut(s) 1189
Bsp143I GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
Bsp19I CCATGG 1 cut(s) 159
Bsp68I TCGCGA 1 cut(s) 191
BspACI CCGC 6 cut(s) 423, 437, 663, 888, 1246, 1255
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 4 cut(s) 191, 437, 872, 890
BspLI GGNNCC 3 cut(s) 6, 845, 1272
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 1270
BspTI CTTAAG 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 159
BssHII GCGCGC 1 cut(s) 870
BssMI GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
BssNI GRCGYC 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 3 cut(s) 387, 933, 1275
Bst4CI ACNGT 6 cut(s) 255, 416, 554, 707, 988, 1174
Bst6I CTCTTC 3 cut(s) 301, 337, 453
BstACI GRCGYC 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 872, 1198
BstDEI CTNAG 3 cut(s) 263, 376, 1260
BstDSI CCRYGG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 4 cut(s) 191, 437, 872, 890
BstHHI GCGC 3 cut(s) 872, 874, 892
BstKTI GATC 7 cut(s) 7, 18, 358, 547, 694, 794, 1334
BstMAI GTCTC 1 cut(s) 1189
BstMBI GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
BstMWI GCNNNNNNNGC 1 cut(s) 1252
BstNI CCWGG 3 cut(s) 387, 933, 1275
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 4 cut(s) 385, 833, 931, 1273
BstSFI CTRYAG 2 cut(s) 234, 624
BstUI CGCG 4 cut(s) 191, 437, 872, 890
BstV1I GCAGC 4 cut(s) 587, 879, 937, 968
BstX2I RGATCY 2 cut(s) 4, 791
BstYI RGATCY 2 cut(s) 4, 791
Bsu15I ATCGAT 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 418
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 2 cut(s) 1125, 1179
BtuMI TCGCGA 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 872, 1198
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 3 cut(s) 872, 874, 892
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 2 cut(s) 328, 515
Csp6I GTAC 5 cut(s) 470, 485, 984, 1180, 1271
CviAII CATG 4 cut(s) 65, 160, 1060, 1228
CviQI GTAC 5 cut(s) 470, 485, 984, 1180, 1271
DdeI CTNAG 3 cut(s) 263, 376, 1260
DpnI GATC 7 cut(s) 6, 17, 357, 546, 693, 793, 1333
DpnII GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
Eam1104I CTCTTC 3 cut(s) 301, 337, 453
EarI CTCTTC 3 cut(s) 301, 337, 453
Eco130I CCWWGG 1 cut(s) 159
Eco32I GATATC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 876
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 3 cut(s) 385, 931, 1273
EcoRV GATATC 1 cut(s) 673
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 1189
FaeI CATG 4 cut(s) 68, 163, 1063, 1231
FatI CATG 4 cut(s) 64, 159, 1059, 1227
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 5 cut(s) 576, 868, 888, 926, 957
FokI GGATG 1 cut(s) 492
Fsp4HI GCNGC 5 cut(s) 576, 868, 888, 926, 957
FspBI CTAG 3 cut(s) 668, 878, 1281
GlaI GCGC 3 cut(s) 871, 873, 891
GluI GCNGC 5 cut(s) 576, 868, 888, 926, 957
GsuI CTGGAG 1 cut(s) 1149
HapII CCGG 3 cut(s) 634, 649, 835
HgaI GACGC 2 cut(s) 328, 515
HhaI GCGC 3 cut(s) 872, 874, 892
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 4 cut(s) 68, 163, 1063, 1231
Hin6I GCGC 3 cut(s) 870, 872, 890
HinP1I GCGC 3 cut(s) 870, 872, 890
HinfI GANTC 7 cut(s) 70, 172, 281, 512, 591, 997, 1294
HpaII CCGG 3 cut(s) 634, 649, 835
HphI GGTGA 3 cut(s) 428, 799, 1097
Hpy166II GTNNAC 4 cut(s) 269, 412, 631, 822
Hpy188I TCNGA 7 cut(s) 35, 286, 585, 728, 781, 798, 856
Hpy188III TCNNGA 8 cut(s) 83, 190, 548, 787, 947, 1166, 1298, 1316
Hpy8I GTNNAC 4 cut(s) 269, 412, 631, 822
HpyAV CCTTC 7 cut(s) 236, 305, 308, 851, 1082, 1261, 1295
HpyCH4III ACNGT 6 cut(s) 255, 416, 554, 707, 988, 1174
HpyCH4IV ACGT 3 cut(s) 408, 541, 1182
HpyCH4V TGCA 9 cut(s) 98, 226, 393, 404, 526, 626, 925, 956, 1196
HpyF10VI GCNNNNNNNGC 1 cut(s) 1252
HpyF3I CTNAG 3 cut(s) 263, 376, 1260
HpySE526I ACGT 3 cut(s) 408, 541, 1182
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 4 cut(s) 68, 163, 1063, 1231
HspAI GCGC 3 cut(s) 870, 872, 890
KpnI GGTACC 1 cut(s) 1274
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 163, 1049
Lsp1109I GCAGC 4 cut(s) 587, 879, 937, 968
LweI GCATC 5 cut(s) 48, 85, 235, 391, 513
MaeI CTAG 3 cut(s) 668, 878, 1281
MaeII ACGT 3 cut(s) 408, 541, 1182
MaeIII GTNAC 3 cut(s) 143, 554, 1074
MalI GATC 7 cut(s) 6, 17, 357, 546, 693, 793, 1333
MbiI CCGCTC 1 cut(s) 425
MboI GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
MboII GAAGA 6 cut(s) 318, 354, 470, 974, 1010, 1276
MflI RGATCY 2 cut(s) 4, 791
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 1006
MmeI TCCRAC 2 cut(s) 759, 1027
MnlI CCTC 8 cut(s) 129, 232, 296, 338, 383, 731, 929, 1016
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 5 cut(s) 177, 201, 215, 396, 659
MslI CAYNNNNRTG 2 cut(s) 63, 1232
MspA1I CMGCKG 1 cut(s) 1082
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 3 cut(s) 634, 649, 835
MspR9I CCNGG 4 cut(s) 387, 835, 933, 1275
MvaI CCWGG 3 cut(s) 387, 933, 1275
MvnI CGCG 4 cut(s) 191, 437, 872, 890
MwoI GCNNNNNNNGC 1 cut(s) 1252
NciI CCSGG 1 cut(s) 835
NcoI CCATGG 1 cut(s) 159
NdeII GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
NlaIII CATG 4 cut(s) 68, 163, 1063, 1231
NlaIV GGNNCC 3 cut(s) 6, 845, 1272
NruI TCGCGA 1 cut(s) 191
PauI GCGCGC 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 453
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 453
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 6 cut(s) 70, 172, 281, 512, 591, 1294
PflFI GACNNNGTC 1 cut(s) 495
PkrI GCNGC 5 cut(s) 577, 869, 889, 927, 958
PleI GAGTC 1 cut(s) 1005
PpsI GAGTC 1 cut(s) 1005
PsiI TTATAA 1 cut(s) 1208
Psp6I CCWGG 3 cut(s) 385, 931, 1273
PspEI GGTNACC 1 cut(s) 143
PspGI CCWGG 3 cut(s) 385, 931, 1273
PspN4I GGNNCC 3 cut(s) 6, 845, 1272
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 4, 791
PsyI GACNNNGTC 1 cut(s) 495
PteI GCGCGC 1 cut(s) 870
PvuII CAGCTG 1 cut(s) 1082
RruI TCGCGA 1 cut(s) 191
RsaI GTAC 5 cut(s) 471, 486, 985, 1181, 1272
RsaNI GTAC 5 cut(s) 470, 485, 984, 1180, 1271
RseI CAYNNNNRTG 2 cut(s) 63, 1232
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 5 cut(s) 177, 201, 215, 396, 659
SatI GCNGC 5 cut(s) 576, 868, 888, 926, 957
Sau3AI GATC 7 cut(s) 4, 15, 355, 544, 691, 791, 1331
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 1 cut(s) 1006
ScrFI CCNGG 4 cut(s) 387, 835, 933, 1275
SfaNI GCATC 5 cut(s) 48, 85, 235, 391, 513
SfcI CTRYAG 2 cut(s) 234, 624
SmiMI CAYNNNNRTG 2 cut(s) 63, 1232
SmlI CTYRAG 3 cut(s) 176, 272, 787
SmoI CTYRAG 3 cut(s) 176, 272, 787
SpeI ACTAGT 1 cut(s) 1280
Sse9I AATT 1 cut(s) 47
SsiI CCGC 6 cut(s) 423, 437, 663, 888, 1246, 1255
SspI AATATT 1 cut(s) 1007
SspMI CTAG 3 cut(s) 668, 878, 1281
StyD4I CCNGG 4 cut(s) 385, 833, 931, 1273
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 6 cut(s) 255, 416, 554, 707, 988, 1174
TaiI ACGT 3 cut(s) 411, 544, 1185
TaqI TCGA 5 cut(s) 42, 301, 714, 1021, 1148
TasI AATT 1 cut(s) 47
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 6 cut(s) 70, 172, 281, 512, 591, 1294
Tru1I TTAA 5 cut(s) 177, 201, 215, 396, 659
Tru9I TTAA 5 cut(s) 177, 201, 215, 396, 659
TscAI CASTG 2 cut(s) 1125, 1179
TseI GCWGC 4 cut(s) 575, 867, 925, 956
TspDTI ATGAA 6 cut(s) 60, 97, 185, 317, 632, 1048
TspRI CASTG 2 cut(s) 1125, 1179
Tth111I GACNNNGTC 1 cut(s) 495
Vha464I CTTAAG 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 1173
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 3 cut(s) 668, 878, 1281
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.