Rw7G019110

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0003301
Physical Location & Seq
Forward (+)
20923434 .. 20924072
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G019110.1

Sequence Viewer

Length: 639 bp
ATGGAGGATGGTGAACTTCTAGATCACATTACTGGGGCATCATTTGTCGATACTCCTCTACACATAGCTGCTTCCGAAGGGCATATACAGTTTGCCATGGAGATAATGAGGCTAATGCCATCATTTGCGAGGAAGCCTAACCAAGATGGATTTAGTCCCATGCACTTGGCCCTGCAAAGTGGAAAAACCAGGATGGTGGTTCGTCTCCTAGATGCTGATAGAAGCCTTGTTCGGGTGCCAGGGAGGGAGGGTGTGACACCCTTGCACTATGTTGCCAAGGAAGGAAATATCGGACTCTTAGAAGAGTTTCTATCGGCCTGCCCAAAATCCTTGGAGGATGTGACAATTCGAAACGAGACCTCTCTGCATATTGCGCTGAAAAATGACAAGGTCGAAGCATTTGAATTTGTGTTGAGATGGCTAAAAGAGGTCTGTTATGAAGAGGTACATCAACTGGAGAAAAAGGTATTGAACTGGAAGGATGAGGAAGGCAACACTTTGTTGCACATTGCAACACTTAGAAATCAACCTCAGGTCAGTTTTCCTAGTCTTATATTGACCTCAAAGAGCATAAGAAATTTCAGCTTCATATCTAAAGATAAACAATTTGTGAAACTCAATTGGGGGTCAATTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001508 GO:0002027 GO:0002376 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0006950 GO:0006952 GO:0006955 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009893 GO:0009987 GO:0010033 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014070 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042221 GO:0042383 GO:0042391 GO:0042493 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1901700 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

212

Amino Acids

24.08

Weight (kDa)

6.25

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 17 - 72 1.4e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AcsI RAATTY 2 cut(s) 404, 577
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 404, 472
AjnI CCWGG 2 cut(s) 188, 238
AluBI AGCT 2 cut(s) 68, 585
AluI AGCT 2 cut(s) 68, 585
Alw26I GTCTC 2 cut(s) 209, 350
AoxI GGCC 2 cut(s) 168, 315
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 404, 577
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 531
BanI GGYRCC 1 cut(s) 235
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
BbvI GCAGC 1 cut(s) 55
BccI CCATC 5 cut(s) 2, 127, 140, 187, 411
BciT130I CCWGG 2 cut(s) 190, 240
BcoDI GTCTC 2 cut(s) 209, 350
BfaI CTAG 3 cut(s) 20, 209, 546
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 2 cut(s) 190, 240
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 190, 240
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 47, 202
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 476
Bpu14I TTCGAA 1 cut(s) 349
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 4 cut(s) 96, 239, 276, 330
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 3 cut(s) 37, 459, 479
Bse21I CCTNAGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 190, 240
BseDI CCNNGG 4 cut(s) 96, 239, 276, 330
BseGI GGATG 4 cut(s) 13, 198, 343, 487
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 3 cut(s) 37, 459, 479
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 170, 317
BshNI GGYRCC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 2 cut(s) 209, 350
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 170, 317
Bso31I GGTCTC 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 349
Bsp143I GATC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 96
BspANI GGCC 2 cut(s) 170, 317
BspCNI CTCAG 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 3 cut(s) 37, 459, 479
BssECI CCNNGG 4 cut(s) 96, 239, 276, 330
BssMI GATC 1 cut(s) 22
BssT1I CCWWGG 3 cut(s) 96, 276, 330
Bst2UI CCWGG 2 cut(s) 190, 240
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 2 cut(s) 297, 435
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 298, 518, 531
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 4 cut(s) 13, 198, 343, 487
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 209, 350
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 2 cut(s) 190, 240
BstSCI CCNGG 2 cut(s) 188, 238
BstV1I GCAGC 1 cut(s) 55
BstXI CCANNNNNNTGG 2 cut(s) 166, 196
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 2 cut(s) 170, 317
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 4 cut(s) 13, 198, 343, 487
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 446
CviAII CATG 2 cut(s) 97, 160
CviJI RGCY 8 cut(s) 68, 112, 136, 170, 225, 317, 421, 585
CviKI_1 RGCY 8 cut(s) 68, 112, 136, 170, 225, 317, 421, 585
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 3 cut(s) 298, 518, 531
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 297, 435
EarI CTCTTC 2 cut(s) 297, 435
Eco130I CCWWGG 3 cut(s) 96, 276, 330
Eco31I GGTCTC 1 cut(s) 350
Eco81I CCTNAGG 1 cut(s) 531
EcoRII CCWGG 2 cut(s) 188, 238
EcoT14I CCWWGG 3 cut(s) 96, 276, 330
ErhI CCWWGG 3 cut(s) 96, 276, 330
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 2 cut(s) 100, 163
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 96, 159
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 4 cut(s) 20, 205, 350, 494
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 3 cut(s) 20, 209, 546
GlaI GCGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 2 cut(s) 170, 317
HhaI GCGC 1 cut(s) 376
Hin1II CATG 2 cut(s) 100, 163
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 1 cut(s) 294
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 76, 293
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 4 cut(s) 71, 275, 472, 482
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 6 cut(s) 163, 175, 265, 367, 505, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 3 cut(s) 298, 518, 531
Hsp92II CATG 2 cut(s) 100, 163
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 47, 202
MaeI CTAG 3 cut(s) 20, 209, 546
MaeIII GTNAC 2 cut(s) 253, 340
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 2 cut(s) 314, 452
MfeI CAATTG 1 cut(s) 619
MluCI AATT 6 cut(s) 345, 404, 577, 605, 619, 630
MlyI GAGTC 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 306
MspR9I CCNGG 2 cut(s) 190, 240
MunI CAATTG 1 cut(s) 619
MvaI CCWGG 2 cut(s) 190, 240
MwoI GCNNNNNNNGC 1 cut(s) 373
NcoI CCATGG 1 cut(s) 96
NdeII GATC 1 cut(s) 22
NlaIII CATG 2 cut(s) 100, 163
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 253, 340
NspV TTCGAA 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 389
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 188, 238
PspGI CCWGG 2 cut(s) 188, 238
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 389
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 190, 240
SfaNI GCATC 2 cut(s) 47, 202
SfuI TTCGAA 1 cut(s) 349
Sse9I AATT 6 cut(s) 345, 404, 577, 605, 619, 630
SspMI CTAG 3 cut(s) 20, 209, 546
StyD4I CCNGG 2 cut(s) 188, 238
StyI CCWWGG 3 cut(s) 96, 276, 330
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 48, 349, 393
TasI AATT 6 cut(s) 345, 404, 577, 605, 619, 630
TseFI GTSAC 2 cut(s) 253, 340
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 2 cut(s) 253, 340
TspDTI ATGAA 2 cut(s) 453, 577
Tth111I GACNNNGTC 1 cut(s) 389
XapI RAATTY 2 cut(s) 404, 577
XbaI TCTAGA 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 3 cut(s) 20, 209, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.