RLG00000026829

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003301
Physical Location & Seq
Reverse (-)
6333809 .. 6337450
3642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026829

Sequence Viewer

Length: 1161 bp
ATGCTGCTGAATGACGAGGACGCCGTTGGGATGACTCGCTTCGCTGGAATTGAGAACGACGACCAGATGACTCACGTAGCTGTGTTCGACTCACGCCGCTGGGATGGCAACAAGGAGGTTCTAAGGTTGAAACCAGCTTTGCTAAAGAAATCAACCAGGATTGTTATAGCCCGATGCATATTGCGTCTGCCAACGGAATGTGTCGAAGATGTGACCGAGCAAGGGGAGACTGTTTTTCACCTTGCTGTCAAGAACAACCAGTTTGAAGCTATTGATGCTATGGTGGAATTGGTCCGTGAAAGGAACAAACTTGACATCCTGAATATGAAAGATAATAATGGCAACTCAGTTCTTCACCTAGCAACCTGGAAGAAGCAACACCAGGTGGTGCAATGTTTACTTGCCAATAACGGAACTAGTACTCCGTGTACATTGGACGTAAACAGTGTGAATCAGAGTGGTCTAACAGCTCTTGATCTGCTACTAATCTTCCCTAGTGGAGCCGGTGACCTGGAGATCGATGGTATCCTTCGCGGTGCAGGAGCTTTGAGAACACGAGACATAGTCCACACTAATCACAACCATACCGTATTAAGTGTCCCCGCAGCATCAGAACGCCATGATGGTTTGCTTATGGACCCAAAAAATTTGGTGGAGTACTTCAAGTTCAAAAGGGGCAGAGACTCTCCTGATGACGCACAAACCGCTCTGTTAGTCGTGGCAGTACTGGTGGCTACGGCAACCTATGACACTGCAATAAACCCTCCAGGTGGTCTTTGGCAGGACACAAACTTAAGCAAGAATGGGACTGATCCACCACACCTTGTCGGGACGGCGAATATCGCCTCTTACAACACAGCTTACTACGTCGTTGGGGCGATTTTCAACTCCATAGGGTTTTCAGTTTCTCTTCACATGATCAATATCCTCACAACCAATTTCCCTTTGCGGTTGGAGCTTCAAGTTTGTGGTGTTGCAATGTACTTTACGTACGTCACTGCATTGATTACTATATCTCCAGGTTTGACCTCAGGGTGGTACACATTGTTTGTACTTGTGCCATTTCTGCCTATGGTGGTACTACTTGCCGTGAGGTTTATCATCAAGATTACAGAACCTCTGCGAAATCGACTGCAGACCTGCGGATTTGTACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

387

Amino Acids

42.58

Weight (kDa)

6.06

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 72 - 138 7.5e-08 Ankyrin repeats (3 copies)
PGG PF13962 232 - 336 6.1e-14 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1148
AccBSI CCGCTC 1 cut(s) 707
AccII CGCG 1 cut(s) 534
AciI CCGC 6 cut(s) 97, 534, 603, 705, 949, 1143
AclWI GGATC 1 cut(s) 806
AcsI RAATTY 1 cut(s) 646
AcyI GRCGYC 1 cut(s) 21
AdeI CACNNNGTG 1 cut(s) 385
AfiI CCNNNNNNNGG 3 cut(s) 222, 770, 1035
AflII CTTAAG 1 cut(s) 793
AgsI TTSAA 6 cut(s) 130, 266, 664, 670, 886, 962
AhlI ACTAGT 1 cut(s) 416
AjnI CCWGG 6 cut(s) 155, 365, 381, 510, 766, 1018
AloI GAACNNNNNNTCC 2 cut(s) 406, 438
AluBI AGCT 7 cut(s) 80, 137, 269, 470, 545, 860, 958
AluI AGCT 7 cut(s) 80, 137, 269, 470, 545, 860, 958
Alw26I GTCTC 3 cut(s) 221, 552, 675
AlwI GGATC 1 cut(s) 806
ApeKI GCWGC 2 cut(s) 4, 605
ApoI RAATTY 1 cut(s) 646
AspS9I GGNCC 2 cut(s) 292, 637
AsuHPI GGTGA 3 cut(s) 230, 347, 518
AvaII GGWCC 2 cut(s) 292, 637
AxyI CCTNAGG 1 cut(s) 1030
BauI CACGAG 1 cut(s) 555
BbvI GCAGC 1 cut(s) 617
BccI CCATC 3 cut(s) 98, 515, 617
BceAI ACGGC 4 cut(s) 8, 753, 849, 1073
BciT130I CCWGG 6 cut(s) 157, 367, 383, 512, 768, 1020
BciVI GTATCC 1 cut(s) 536
BclI TGATCA 1 cut(s) 918
BcoDI GTCTC 3 cut(s) 221, 552, 675
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 3 cut(s) 359, 417, 495
BfmI CTRYAG 1 cut(s) 1133
BfrI CTTAAG 1 cut(s) 793
BfuAI ACCTGC 1 cut(s) 1148
BfuI GTATCC 1 cut(s) 536
BisI GCNGC 3 cut(s) 5, 97, 606
BlsI GCNGC 3 cut(s) 6, 98, 607
BmcAI AGTACT 3 cut(s) 421, 659, 726
Bme1390I CCNGG 6 cut(s) 157, 367, 383, 512, 768, 1020
Bme18I GGWCC 2 cut(s) 292, 637
BmgT120I GGNCC 2 cut(s) 292, 637
BmiI GGNNCC 2 cut(s) 502, 639
BmrFI CCNGG 6 cut(s) 157, 367, 383, 512, 768, 1020
BmsI GCATC 3 cut(s) 164, 265, 617
BpmI CTGGAG 3 cut(s) 533, 750, 1002
Bsa29I ATCGAT 1 cut(s) 519
BsaAI YACGTR 2 cut(s) 76, 990
BsaBI GATNNNNATC 1 cut(s) 923
BsaHI GRCGYC 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 406, 436, 1000, 1030
Bsc4I CCNNNNNNNGG 3 cut(s) 222, 770, 1035
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 2 cut(s) 259, 732
Bse21I CCTNAGG 1 cut(s) 1030
Bse3DI GCAATG 2 cut(s) 398, 984
Bse8I GATNNNNATC 1 cut(s) 923
BseBI CCWGG 6 cut(s) 157, 367, 383, 512, 768, 1020
BseCI ATCGAT 1 cut(s) 519
BseGI GGATG 3 cut(s) 36, 109, 315
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 3 cut(s) 222, 770, 1035
BseMI GCAATG 2 cut(s) 398, 984
BseMII CTCAG 2 cut(s) 360, 1044
BseNI ACTGG 2 cut(s) 259, 732
BseXI GCAGC 1 cut(s) 617
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 534
BshVI ATCGAT 1 cut(s) 519
BsiSI CCGG 1 cut(s) 504
BsiWI CGTACG 1 cut(s) 990
BslFI GGGAC 3 cut(s) 584, 820, 844
BslI CCNNNNNNNGG 3 cut(s) 222, 770, 1035
BsmAI GTCTC 3 cut(s) 221, 552, 675
BsmFI GGGAC 3 cut(s) 584, 820, 844
Bsp1407I TGTACA 1 cut(s) 428
Bsp143I GATC 4 cut(s) 475, 516, 811, 918
BspACI CCGC 6 cut(s) 97, 534, 603, 705, 949, 1143
BspCNI CTCAG 2 cut(s) 359, 1043
BspDI ATCGAT 1 cut(s) 519
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 502, 639
BspMAI CTGCAG 1 cut(s) 1137
BspMI ACCTGC 1 cut(s) 1148
BspPI GGATC 1 cut(s) 806
BspTI CTTAAG 1 cut(s) 793
BsrBI CCGCTC 1 cut(s) 707
BsrDI GCAATG 2 cut(s) 398, 984
BsrFI RCCGGY 1 cut(s) 503
BsrGI TGTACA 1 cut(s) 428
BsrI ACTGG 2 cut(s) 259, 732
BssAI RCCGGY 1 cut(s) 503
BssMI GATC 4 cut(s) 475, 516, 811, 918
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 555
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 6 cut(s) 157, 367, 383, 512, 768, 1020
Bst4CI ACNGT 3 cut(s) 232, 446, 589
Bst6I CTCTTC 1 cut(s) 915
BstACI GRCGYC 1 cut(s) 21
BstAFI CTTAAG 1 cut(s) 793
BstAUI TGTACA 1 cut(s) 428
BstBAI YACGTR 2 cut(s) 76, 990
BstDEI CTNAG 3 cut(s) 122, 346, 1030
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 3 cut(s) 36, 109, 315
BstFNI CGCG 1 cut(s) 534
BstKTI GATC 4 cut(s) 478, 519, 814, 921
BstMAI GTCTC 3 cut(s) 221, 552, 675
BstMBI GATC 4 cut(s) 475, 516, 811, 918
BstMWI GCNNNNNNNGC 6 cut(s) 105, 275, 704, 842, 955, 1066
BstNI CCWGG 6 cut(s) 157, 367, 383, 512, 768, 1020
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 6 cut(s) 155, 365, 381, 510, 766, 1018
BstSFI CTRYAG 1 cut(s) 1133
BstSNI TACGTA 1 cut(s) 990
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 519
Bsu36I CCTNAGG 1 cut(s) 1030
BsuI GTATCC 1 cut(s) 536
BsuTUI ATCGAT 1 cut(s) 519
BtsCI GGATG 3 cut(s) 36, 109, 315
BtsI GCAGTG 2 cut(s) 750, 996
BtsIMutI CAGTG 3 cut(s) 451, 750, 996
BveI ACCTGC 1 cut(s) 1148
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 292, 637
ClaI ATCGAT 1 cut(s) 519
CseI GACGC 3 cut(s) 29, 173, 704
CsiI ACCWGGT 1 cut(s) 381
CviAII CATG 2 cut(s) 620, 916
DdeI CTNAG 3 cut(s) 122, 346, 1030
DpnI GATC 4 cut(s) 477, 518, 813, 920
DpnII GATC 4 cut(s) 475, 516, 811, 918
DraIII CACNNNGTG 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 915
EarI CTCTTC 1 cut(s) 915
Eco105I TACGTA 1 cut(s) 990
Eco47I GGWCC 2 cut(s) 292, 637
Eco81I CCTNAGG 1 cut(s) 1030
Eco91I GGTNACC 1 cut(s) 506
EcoO65I GGTNACC 1 cut(s) 506
EcoRII CCWGG 6 cut(s) 155, 365, 381, 510, 766, 1018
EcoT22I ATGCAT 1 cut(s) 179
FaeI CATG 2 cut(s) 623, 919
FaqI GGGAC 3 cut(s) 584, 820, 844
FatI CATG 2 cut(s) 619, 915
FauI CCCGC 1 cut(s) 610
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 3 cut(s) 5, 97, 606
FokI GGATG 3 cut(s) 43, 116, 302
Fsp4HI GCNGC 3 cut(s) 5, 97, 606
FspBI CTAG 3 cut(s) 359, 417, 495
GluI GCNGC 3 cut(s) 5, 97, 606
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 3 cut(s) 533, 750, 1002
HapII CCGG 1 cut(s) 504
HgaI GACGC 3 cut(s) 29, 173, 704
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 623, 919
HinfI GANTC 5 cut(s) 34, 70, 89, 451, 683
HpaII CCGG 1 cut(s) 504
HphI GGTGA 3 cut(s) 230, 347, 518
Hpy166II GTNNAC 5 cut(s) 398, 429, 442, 568, 1041
Hpy188I TCNGA 2 cut(s) 456, 613
Hpy188III TCNNGA 6 cut(s) 250, 319, 473, 689, 829, 1105
Hpy8I GTNNAC 5 cut(s) 398, 429, 442, 568, 1041
Hpy99I CGWCG 2 cut(s) 62, 872
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 3 cut(s) 232, 446, 589
HpyCH4IV ACGT 5 cut(s) 75, 438, 867, 989, 993
HpyCH4V TGCA 7 cut(s) 177, 391, 539, 755, 977, 1001, 1135
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 275, 704, 842, 955, 1066
HpyF3I CTNAG 3 cut(s) 122, 346, 1030
HpySE526I ACGT 5 cut(s) 75, 438, 867, 989, 993
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 623, 919
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 4 cut(s) 475, 516, 811, 918
LmnI GCTCC 3 cut(s) 500, 542, 955
Lsp1109I GCAGC 1 cut(s) 617
LweI GCATC 3 cut(s) 164, 265, 617
MabI ACCWGGT 1 cut(s) 381
MaeI CTAG 3 cut(s) 359, 417, 495
MaeII ACGT 5 cut(s) 75, 438, 867, 989, 993
MaeIII GTNAC 3 cut(s) 211, 506, 994
MalI GATC 4 cut(s) 477, 518, 813, 920
MbiI CCGCTC 1 cut(s) 707
MboI GATC 4 cut(s) 475, 516, 811, 918
MboII GAAGA 5 cut(s) 218, 344, 382, 481, 902
MluCI AATT 5 cut(s) 48, 287, 646, 937, 1156
MlyI GAGTC 4 cut(s) 28, 64, 83, 677
MmeI TCCRAC 1 cut(s) 933
MnlI CCTC 8 cut(s) 10, 109, 774, 856, 938, 1039, 1086, 1128
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 3 cut(s) 593, 794, 1159
MspA1I CMGCKG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 793
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 6 cut(s) 157, 367, 383, 512, 768, 1020
MvaI CCWGG 6 cut(s) 157, 367, 383, 512, 768, 1020
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 6 cut(s) 105, 275, 704, 842, 955, 1066
NdeII GATC 4 cut(s) 475, 516, 811, 918
NlaIII CATG 2 cut(s) 623, 919
NlaIV GGNNCC 2 cut(s) 502, 639
NmuCI GTSAC 3 cut(s) 211, 506, 994
NsiI ATGCAT 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 1 cut(s) 451
Pfl23II CGTACG 1 cut(s) 990
PflFI GACNNNGTC 1 cut(s) 563
PkrI GCNGC 3 cut(s) 6, 98, 607
PleI GAGTC 4 cut(s) 28, 64, 83, 677
PpsI GAGTC 4 cut(s) 28, 64, 83, 677
Ppu21I YACGTR 2 cut(s) 76, 990
Psp6I CCWGG 6 cut(s) 155, 365, 381, 510, 766, 1018
PspEI GGTNACC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 6 cut(s) 155, 365, 381, 510, 766, 1018
PspLI CGTACG 1 cut(s) 990
PspN4I GGNNCC 2 cut(s) 502, 639
PspPI GGNCC 2 cut(s) 292, 637
PsrI GAACNNNNNNTAC 2 cut(s) 650, 682
PstI CTGCAG 1 cut(s) 1137
PsyI GACNNNGTC 1 cut(s) 563
SaqAI TTAA 3 cut(s) 593, 794, 1159
SatI GCNGC 3 cut(s) 5, 97, 606
Sau3AI GATC 4 cut(s) 475, 516, 811, 918
Sau96I GGNCC 2 cut(s) 292, 637
ScaI AGTACT 3 cut(s) 421, 659, 726
SchI GAGTC 4 cut(s) 28, 64, 83, 677
ScrFI CCNGG 6 cut(s) 157, 367, 383, 512, 768, 1020
SexAI ACCWGGT 1 cut(s) 381
SfaNI GCATC 3 cut(s) 164, 265, 617
SfcI CTRYAG 1 cut(s) 1133
SinI GGWCC 2 cut(s) 292, 637
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
SnaBI TACGTA 1 cut(s) 990
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 5 cut(s) 48, 287, 646, 937, 1156
SsiI CCGC 6 cut(s) 97, 534, 603, 705, 949, 1143
SspMI CTAG 3 cut(s) 359, 417, 495
StyD4I CCNGG 6 cut(s) 155, 365, 381, 510, 766, 1018
TaaI ACNGT 3 cut(s) 232, 446, 589
TaiI ACGT 5 cut(s) 78, 441, 870, 992, 996
TaqI TCGA 4 cut(s) 87, 204, 519, 1129
TaqII GACCGA 1 cut(s) 230
TasI AATT 5 cut(s) 48, 287, 646, 937, 1156
TatI WGTACW 7 cut(s) 419, 428, 657, 724, 981, 1051, 1150
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 3 cut(s) 593, 794, 1159
Tru9I TTAA 3 cut(s) 593, 794, 1159
TscAI CASTG 3 cut(s) 451, 757, 1003
TseFI GTSAC 3 cut(s) 211, 506, 994
TseI GCWGC 2 cut(s) 4, 605
Tsp45I GTSAC 3 cut(s) 211, 506, 994
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 4 cut(s) 209, 284, 414, 426
TspRI CASTG 3 cut(s) 451, 757, 1003
Tth111I GACNNNGTC 1 cut(s) 563
Vha464I CTTAAG 1 cut(s) 793
VpaK11BI GGWCC 2 cut(s) 292, 637
XapI RAATTY 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 774
XspI CTAG 3 cut(s) 359, 417, 495
ZrmI AGTACT 3 cut(s) 421, 659, 726
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.