AT5G15500

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003301
Physical Location & Seq
Reverse (-)
5031648 .. 5033540
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15500.2

Sequence Viewer

Length: 1056 bp
ATGACGCCATTGCTAGTTGCGGTAAGTAGAAAGAAGATTGATCTGATGTCAGAATTCTTCTTGGGTTGTCCCGAAAGCATTGTGGACGCAAATGTGAACGGAGAAAACGCTCTTCACATCGCCGTGAATAACTACGACCAAAGAGAAGGATTAAGCGTTCTTAAAGTTCTCATGGGATGGATCTTAAGATTGTGTCAAAAAGATGCAGAGTGGATCGAGACAAGAGTCATAAACCGAAGAGACAAAGACGGTAACACGCCTTTACATCTCGCGGCGTACGAGATCAATCGTCAAGCTATGAAATTGTTGTTAGAGAGCTCCAAGATTAACGTCAACATTGAGAACAAGAACGGTTTAACCGTGTTCGACATTGCTGTGTTACACAATAACAGAGAGATAGAGAGAATGGTTAAGAGACATGGTGGAAAACGTTCGGTTTCTCTTGTCAAGATTAAGACAACATCGGATATACTCGCGTCGCAGCTTTCTTGGAGAGAATCGAGACGGACGAAGAAGATTCGGTTTTATTCTTGGATCTCTGAAGAGAGAAGAAACGCTCTTTTAGTGGTCGCAACTCTCATCGTCACAGCTACATATCAGACGGTTCTCCAACCTCCCGGAGGCGTGTCTGATGGCGGTGGTCAAAAGAGTGGAACAAGCGGTCCGAAAGCGGGTTCAGTGGTTATGGACGAGGTCTACTTTATCTGGTTATGGTTGTGGAACAGTGCGGGGTTCTGCTTTGCGATTGAGATGATGATACGTTTGTTGAGTTTAGGACAAGAGAGTATGTTTTGGTATTACCCTCTGTTCGTTCCTATGGTCTTGGCTTACTCTGTTGCAGGGGATGTGATCAAGCCGAACGCAAGAGCGTACACGATCGCAGGTGTGGGTGCGATCGTGGTTCTTATAATTTGGGGATTGGTAGTTTGGTTTTGGGAATGGGTGCAGTCTAAGAGAACCAAGCAACGTGGACCCAAGAGTGGATTGGTTTGGGAAGGTTTCACTACGTTGGATCAAGCTAGAGGTGTTGCGCCTAATCGGTATGTGATTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0001508 GO:0002027 GO:0002376 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0006950 GO:0006952 GO:0006955 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009893 GO:0009987 GO:0010033 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014070 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042221 GO:0042383 GO:0042391 GO:0042493 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045087 GO:0046677 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1901700 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

351

Amino Acids

39.69

Weight (kDa)

9.66

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 7 - 92 1.4e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 183 - 241 1.5e-07 Ankyrin repeats (3 copies)
Ank_5 PF13857 183 - 231 9.9e-06 Ankyrin repeats (many copies)
PGG PF13962 287 - 364 6.7e-10 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 908
AarI CACCTGC 1 cut(s) 872
Acc36I ACCTGC 1 cut(s) 872
AccI GTMKAC 1 cut(s) 696
AccII CGCG 2 cut(s) 272, 476
AciI CCGC 6 cut(s) 20, 272, 636, 660, 671, 728
AclI AACGTT 1 cut(s) 430
AclWI GGATC 4 cut(s) 188, 221, 542, 1020
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 278, 872
AfiI CCNNNNNNNGG 3 cut(s) 620, 671, 980
AflII CTTAAG 1 cut(s) 184
AloI GAACNNNNNNTCC 4 cut(s) 141, 173, 646, 678
AluBI AGCT 5 cut(s) 296, 318, 484, 590, 1019
AluI AGCT 5 cut(s) 296, 318, 484, 590, 1019
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 4 cut(s) 212, 234, 409, 496
AlwI GGATC 4 cut(s) 188, 221, 542, 1020
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 430
AspLEI GCGC 1 cut(s) 1033
AspS9I GGNCC 2 cut(s) 662, 971
AsuC2I CCSGG 1 cut(s) 618
AvaII GGWCC 2 cut(s) 662, 971
BaeI ACNNNNGTAYC 2 cut(s) 749, 782
BanII GRGCYC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 171, 626
BceAI ACGGC 1 cut(s) 107
BclI TGATCA 1 cut(s) 849
BcnI CCSGG 1 cut(s) 618
BcoDI GTCTC 4 cut(s) 212, 234, 409, 496
BfaI CTAG 2 cut(s) 14, 1020
BfrI CTTAAG 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 872
BisI GCNGC 2 cut(s) 273, 482
BlsI GCNGC 2 cut(s) 274, 483
Bme1390I CCNGG 1 cut(s) 618
Bme18I GGWCC 2 cut(s) 662, 971
BmgT120I GGNCC 2 cut(s) 662, 971
BmiI GGNNCC 1 cut(s) 973
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 1 cut(s) 193
BoxI GACNNNNGTC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 3 cut(s) 620, 671, 980
Bse3DI GCAATG 2 cut(s) 8, 369
BseGI GGATG 2 cut(s) 182, 850
BseLI CCNNNNNNNGG 3 cut(s) 620, 671, 980
BseMI GCAATG 2 cut(s) 8, 369
BseXI GCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 965
Bsh1236I CGCG 2 cut(s) 272, 476
Bsh1285I CGRYCG 2 cut(s) 879, 897
BsiEI CGRYCG 2 cut(s) 879, 897
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 618
BsiWI CGTACG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 620, 671, 980
BsmAI GTCTC 4 cut(s) 212, 234, 409, 496
BsmBI CGTCTC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
BspACI CCGC 6 cut(s) 20, 272, 636, 660, 671, 728
BspFNI CGCG 2 cut(s) 272, 476
BspLI GGNNCC 1 cut(s) 973
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 4 cut(s) 188, 221, 542, 1020
BspQI GCTCTTC 1 cut(s) 117
BspTI CTTAAG 1 cut(s) 184
BsrDI GCAATG 2 cut(s) 8, 369
BssMI GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 5 cut(s) 251, 353, 361, 604, 725
Bst6I CTCTTC 3 cut(s) 117, 232, 537
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 951
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 182, 850
BstFNI CGCG 2 cut(s) 272, 476
BstHHI GCGC 1 cut(s) 1033
BstKTI GATC 9 cut(s) 43, 183, 216, 285, 537, 852, 879, 897, 1015
BstMAI GTCTC 4 cut(s) 212, 234, 409, 496
BstMBI GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
BstMCI CGRYCG 2 cut(s) 879, 897
BstPAI GACNNNNGTC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 616
BstUI CGCG 2 cut(s) 272, 476
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 2 cut(s) 180, 534
BstYI RGATCY 2 cut(s) 180, 534
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 182, 850
BtsIMutI CAGTG 2 cut(s) 684, 730
BveI ACCTGC 1 cut(s) 872
CfoI GCGC 1 cut(s) 1033
Cfr13I GGNCC 2 cut(s) 662, 971
CpoI CGGWCCG 1 cut(s) 662
CseI GACGC 3 cut(s) 13, 95, 465
Csp6I GTAC 2 cut(s) 277, 871
CspCI CAANNNNNGTGG 2 cut(s) 949, 984
CspI CGGWCCG 1 cut(s) 662
CviAII CATG 2 cut(s) 172, 419
CviJI RGCY 7 cut(s) 296, 318, 484, 590, 827, 856, 1019
CviKI_1 RGCY 7 cut(s) 296, 318, 484, 590, 827, 856, 1019
CviQI GTAC 2 cut(s) 277, 871
DdeI CTNAG 1 cut(s) 951
DpnI GATC 9 cut(s) 42, 182, 215, 284, 536, 851, 878, 896, 1014
DpnII GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
Eam1104I CTCTTC 3 cut(s) 117, 232, 537
EarI CTCTTC 3 cut(s) 117, 232, 537
Ecl136II GAGCTC 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 662, 971
Eco53kI GAGCTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 561
EcoICRI GAGCTC 1 cut(s) 318
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 320
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 2 cut(s) 175, 422
FaqI GGGAC 1 cut(s) 54
FatI CATG 2 cut(s) 171, 418
FauI CCCGC 2 cut(s) 664, 721
FbaI TGATCA 1 cut(s) 849
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 2 cut(s) 273, 482
FokI GGATG 2 cut(s) 189, 857
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 273, 482
FspBI CTAG 2 cut(s) 14, 1020
GlaI GCGC 1 cut(s) 1032
GluI GCNGC 2 cut(s) 273, 482
HapII CCGG 1 cut(s) 618
HgaI GACGC 3 cut(s) 13, 95, 465
HhaI GCGC 1 cut(s) 1033
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 175, 422
Hin6I GCGC 1 cut(s) 1031
HinP1I GCGC 1 cut(s) 1031
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 3 cut(s) 225, 497, 517
HpaII CCGG 1 cut(s) 618
Hpy166II GTNNAC 6 cut(s) 85, 97, 334, 697, 873, 971
Hpy188I TCNGA 7 cut(s) 45, 52, 466, 541, 600, 631, 666
Hpy188III TCNNGA 4 cut(s) 71, 217, 448, 501
Hpy8I GTNNAC 6 cut(s) 85, 97, 334, 697, 873, 971
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 140, 989
HpyCH4III ACNGT 5 cut(s) 251, 353, 361, 604, 725
HpyCH4IV ACGT 5 cut(s) 330, 430, 760, 967, 1007
HpyCH4V TGCA 3 cut(s) 206, 839, 946
HpyF3I CTNAG 1 cut(s) 951
HpySE526I ACGT 5 cut(s) 330, 430, 760, 967, 1007
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 175, 422
HspAI GCGC 1 cut(s) 1031
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 4 cut(s) 631, 691, 825, 867
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 193
MaeI CTAG 2 cut(s) 14, 1020
MaeII ACGT 5 cut(s) 330, 430, 760, 967, 1007
MaeIII GTNAC 3 cut(s) 251, 378, 583
MalI GATC 9 cut(s) 42, 182, 215, 284, 536, 851, 878, 896, 1014
MboI GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
MboII GAAGA 8 cut(s) 46, 49, 104, 249, 523, 526, 554, 561
MflI RGATCY 2 cut(s) 180, 534
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 3 cut(s) 53, 302, 909
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 634, 990
MnlI CCTC 5 cut(s) 614, 624, 685, 813, 1016
MroXI GAANNNNTTC 1 cut(s) 430
MseI TTAA 7 cut(s) 152, 162, 185, 327, 356, 411, 453
MslI CAYNNNNRTG 2 cut(s) 122, 374
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 1 cut(s) 618
MspR9I CCNGG 1 cut(s) 618
MvnI CGCG 2 cut(s) 272, 476
NciI CCSGG 1 cut(s) 618
NdeII GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
NlaIII CATG 2 cut(s) 175, 422
NlaIV GGNNCC 1 cut(s) 973
NmuCI GTSAC 1 cut(s) 583
PaqCI CACCTGC 1 cut(s) 872
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 357, 506
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 497, 517
Pfl23II CGTACG 1 cut(s) 276
PflFI GACNNNGTC 1 cut(s) 692
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 2 cut(s) 274, 483
Ple19I CGATCG 2 cut(s) 879, 897
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PshAI GACNNNNGTC 1 cut(s) 224
PsiI TTATAA 1 cut(s) 908
Psp124BI GAGCTC 1 cut(s) 320
Psp1406I AACGTT 1 cut(s) 430
PspLI CGTACG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 973
PspPI GGNCC 2 cut(s) 662, 971
PsuI RGATCY 2 cut(s) 180, 534
PsyI GACNNNGTC 1 cut(s) 692
PvuI CGATCG 2 cut(s) 879, 897
RsaI GTAC 2 cut(s) 278, 872
RsaNI GTAC 2 cut(s) 277, 871
RseI CAYNNNNRTG 2 cut(s) 122, 374
Rsr2I CGGWCCG 1 cut(s) 662
RsrII CGGWCCG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 7 cut(s) 152, 162, 185, 327, 356, 411, 453
SatI GCNGC 2 cut(s) 273, 482
Sau3AI GATC 9 cut(s) 40, 180, 213, 282, 534, 849, 876, 894, 1012
Sau96I GGNCC 2 cut(s) 662, 971
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 618
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 1 cut(s) 193
SinI GGWCC 2 cut(s) 662, 971
SmiMI CAYNNNNRTG 2 cut(s) 122, 374
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 3 cut(s) 53, 302, 909
SsiI CCGC 6 cut(s) 20, 272, 636, 660, 671, 728
SspMI CTAG 2 cut(s) 14, 1020
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 616
TaaI ACNGT 5 cut(s) 251, 353, 361, 604, 725
TaiI ACGT 5 cut(s) 333, 433, 763, 970, 1010
TaqI TCGA 3 cut(s) 216, 366, 500
TasI AATT 3 cut(s) 53, 302, 909
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 2 cut(s) 497, 517
Tru1I TTAA 7 cut(s) 152, 162, 185, 327, 356, 411, 453
Tru9I TTAA 7 cut(s) 152, 162, 185, 327, 356, 411, 453
TscAI CASTG 2 cut(s) 684, 730
TseFI GTSAC 1 cut(s) 583
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 583
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 2 cut(s) 114, 520
TspRI CASTG 2 cut(s) 684, 730
Tth111I GACNNNGTC 1 cut(s) 692
Vha464I CTTAAG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 662, 971
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XmiI GTMKAC 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 2 cut(s) 14, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.