Rmu_sc0006687.1_g000001

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006687.1
OG0003301
Physical Location & Seq
Forward (+)
1 .. 3114
3114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006687.1_g000001.1.cds

Sequence Viewer

Length: 883 bp
ggagggaaagactctcttgcattatgcagccgaaattggaaacttagatcttttggctgagtttttagcagcttccccagagtctatcatagatctgacaattcgaaaagaaactgcacttcatgttgctgcaaagaatgacaagttggaagcacttgaagtcttgatgggatggcttcaccatgttgatatggacatgatcttgcagtggactgatgatgaaggcaacactgtggtgaggttgttaataaaaagggttgatataaatgccaagaatttggagggtttaacagcaatggacatatcagatcaccaaggaatgtttaacaataatacagaaataagaagtttattactccaaagaggagctttgacagcttcttcactccctaaacttcctactcttgcaaattttctaagaacagagatgtcattgctcgaaagatgggttatgtgtagttacctcactaaaagttgcctgtcaaatgagaatcgtaataatcttctagtggtagctgtcctgattgcaacagccacattccaagccgtgctcagcccaccagccggtatgcagatcttcagcactccatttggtcgtaaaaccagcagcgacggatctaatagtactggccaagcccgagatagtggggtgcttggtgtcattgacagagccctgccactgttccgcaaatcgtccagtctaaatcggacgacgtggttcgtcggaggaagagagagagggcttcctgttggattcgctggttctcagatcgtgcaccttcaaatcgttgctggttctcagatcgtgcaccttcagatcgttcgttggttctcggatcgtgcaccttcagttcgtcgctggctcgatcgtaccttgtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0012505 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

293

Amino Acids

32.39

Weight (kDa)

8.08

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 686
AclWI GGATC 2 cut(s) 623, 844
AcoI YGGCCR 1 cut(s) 629
AcsI RAATTY 2 cut(s) 275, 410
AcuI CTGAAG 3 cut(s) 563, 798, 832
AfaI GTAC 2 cut(s) 626, 872
AfiI CCNNNNNNNGG 1 cut(s) 564
AgsI TTSAA 2 cut(s) 159, 783
AjiI CACGTC 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 4 cut(s) 72, 369, 378, 516
AluI AGCT 4 cut(s) 72, 369, 378, 516
Alw21I GWGCWC 4 cut(s) 553, 778, 811, 845
Alw44I GTGCAC 3 cut(s) 774, 807, 841
AlwI GGATC 2 cut(s) 623, 844
Ama87I CYCGRG 1 cut(s) 637
AoxI GGCC 1 cut(s) 629
ApaLI GTGCAC 3 cut(s) 774, 807, 841
ApeKI GCWGC 4 cut(s) 27, 69, 129, 607
ApoI RAATTY 2 cut(s) 275, 410
AsuHPI GGTGA 3 cut(s) 171, 248, 303
AsuII TTCGAA 1 cut(s) 104
AvaI CYCGRG 1 cut(s) 637
BaeGI GKGCMC 3 cut(s) 778, 811, 845
BalI TGGCCA 1 cut(s) 631
BanII GRGCYC 1 cut(s) 674
Bbv12I GWGCWC 4 cut(s) 553, 778, 811, 845
BbvI GCAGC 4 cut(s) 39, 81, 116, 619
BccI CCATC 3 cut(s) 161, 166, 439
BceAI ACGGC 1 cut(s) 531
BfaI CTAG 1 cut(s) 507
BglII AGATCT 3 cut(s) 47, 92, 574
BisI GCNGC 4 cut(s) 28, 70, 130, 608
BlpI GCTNAGC 1 cut(s) 552
BlsI GCNGC 4 cut(s) 29, 71, 131, 609
BmcAI AGTACT 1 cut(s) 626
BmeT110I CYCGRG 1 cut(s) 637
BmgBI CACGTC 1 cut(s) 715
Bpu1102I GCTNAGC 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse118I RCCGGY 1 cut(s) 564
Bse1I ACTGG 2 cut(s) 632, 697
Bse3DI GCAATG 2 cut(s) 301, 432
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMI GCAATG 2 cut(s) 301, 432
BseMII CTCAG 4 cut(s) 49, 566, 780, 813
BseNI ACTGG 2 cut(s) 632, 697
BseRI GAGGAG 1 cut(s) 379
BseSI GKGCMC 3 cut(s) 778, 811, 845
BseXI GCAGC 4 cut(s) 39, 81, 116, 619
BsgI GTGCAG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 869
BshFI GGCC 1 cut(s) 631
BsiEI CGRYCG 1 cut(s) 869
BsiHKAI GWGCWC 4 cut(s) 553, 778, 811, 845
BsiHKCI CYCGRG 1 cut(s) 637
BsiSI CCGG 1 cut(s) 565
BslI CCNNNNNNNGG 1 cut(s) 564
BsnI GGCC 1 cut(s) 631
BsoBI CYCGRG 1 cut(s) 637
Bsp119I TTCGAA 1 cut(s) 104
Bsp1286I GDGCHC 5 cut(s) 553, 674, 778, 811, 845
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 1 cut(s) 686
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 4 cut(s) 50, 565, 779, 812
BspPI GGATC 2 cut(s) 623, 844
BspT104I TTCGAA 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 301, 432
BsrFI RCCGGY 1 cut(s) 564
BsrI ACTGG 2 cut(s) 632, 697
BssAI RCCGGY 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 233, 682
Bst6I CTCTTC 1 cut(s) 725
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 6 cut(s) 44, 58, 417, 552, 766, 799
BstF5I GGATG 1 cut(s) 177
BstMCI CGRYCG 1 cut(s) 869
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstSLI GKGCMC 3 cut(s) 778, 811, 845
BstV1I GCAGC 4 cut(s) 39, 81, 116, 619
BstX2I RGATCY 4 cut(s) 47, 92, 574, 615
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 4 cut(s) 47, 92, 574, 615
BsuRI GGCC 1 cut(s) 631
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 213, 229, 678
Cac8I GCNNGC 1 cut(s) 861
Cfr10I RCCGGY 1 cut(s) 564
Csp6I GTAC 2 cut(s) 625, 871
CviAII CATG 3 cut(s) 123, 183, 197
CviQI GTAC 2 cut(s) 625, 871
DdeI CTNAG 6 cut(s) 44, 58, 417, 552, 766, 799
EaeI YGGCCR 1 cut(s) 629
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 674
Eco57I CTGAAG 3 cut(s) 563, 798, 832
Eco88I CYCGRG 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 3 cut(s) 126, 186, 200
FalI AAGNNNNNCTT 3 cut(s) 32, 353, 385
FatI CATG 3 cut(s) 122, 182, 196
Fnu4HI GCNGC 4 cut(s) 28, 70, 130, 608
FokI GGATG 1 cut(s) 184
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 4 cut(s) 28, 70, 130, 608
FspBI CTAG 1 cut(s) 507
GluI GCNGC 4 cut(s) 28, 70, 130, 608
HaeIII GGCC 1 cut(s) 631
HapII CCGG 1 cut(s) 565
Hin1II CATG 3 cut(s) 126, 186, 200
HinfI GANTC 4 cut(s) 11, 81, 491, 754
HpaII CCGG 1 cut(s) 565
HphI GGTGA 3 cut(s) 171, 248, 303
Hpy166II GTNNAC 4 cut(s) 211, 776, 809, 843
Hpy188I TCNGA 8 cut(s) 97, 308, 709, 726, 769, 802, 817, 836
Hpy188III TCNNGA 2 cut(s) 164, 521
Hpy8I GTNNAC 4 cut(s) 211, 776, 809, 843
Hpy99I CGWCG 4 cut(s) 615, 716, 726, 859
HpyAV CCTTC 4 cut(s) 216, 789, 822, 856
HpyCH4III ACNGT 2 cut(s) 233, 682
HpyCH4IV ACGT 1 cut(s) 714
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 6 cut(s) 44, 58, 417, 552, 766, 799
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 3 cut(s) 126, 186, 200
LmnI GCTCC 1 cut(s) 366
Lsp1109I GCAGC 4 cut(s) 39, 81, 116, 619
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 1 cut(s) 459
MboII GAAGA 4 cut(s) 373, 495, 569, 742
MflI RGATCY 4 cut(s) 47, 92, 574, 615
MhlI GDGCHC 5 cut(s) 553, 674, 778, 811, 845
MlsI TGGCCA 1 cut(s) 631
MluCI AATT 4 cut(s) 34, 100, 275, 410
MluNI TGGCCA 1 cut(s) 631
MlyI GAGTC 2 cut(s) 5, 90
MmeI TCCRAC 3 cut(s) 127, 704, 731
MnlI CCTC 6 cut(s) 232, 275, 357, 474, 720, 732
Mox20I TGGCCA 1 cut(s) 631
MscI TGGCCA 1 cut(s) 631
MseI TTAA 4 cut(s) 246, 288, 325, 881
MslI CAYNNNNRTG 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 631
MspI CCGG 1 cut(s) 565
MwoI GCNNNNNNNGC 1 cut(s) 375
NlaIII CATG 3 cut(s) 126, 186, 200
NspV TTCGAA 1 cut(s) 104
OliI CACNNNNGTG 1 cut(s) 234
PfeI GAWTC 2 cut(s) 491, 754
PkrI GCNGC 4 cut(s) 29, 71, 131, 609
Ple19I CGATCG 1 cut(s) 869
PleI GAGTC 2 cut(s) 5, 89
PpsI GAGTC 2 cut(s) 5, 89
PsuI RGATCY 4 cut(s) 47, 92, 574, 615
PvuI CGATCG 1 cut(s) 869
RsaI GTAC 2 cut(s) 626, 872
RsaNI GTAC 2 cut(s) 625, 871
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 4 cut(s) 246, 288, 325, 881
SatI GCNGC 4 cut(s) 28, 70, 130, 608
ScaI AGTACT 1 cut(s) 626
SchI GAGTC 2 cut(s) 5, 90
SduI GDGCHC 5 cut(s) 553, 674, 778, 811, 845
SfuI TTCGAA 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 4 cut(s) 34, 100, 275, 410
SsiI CCGC 1 cut(s) 686
SspMI CTAG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 233, 682
TaiI ACGT 1 cut(s) 717
TaqI TCGA 3 cut(s) 104, 439, 865
TasI AATT 4 cut(s) 34, 100, 275, 410
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 2 cut(s) 491, 754
Tru1I TTAA 4 cut(s) 246, 288, 325, 881
Tru9I TTAA 4 cut(s) 246, 288, 325, 881
TscAI CASTG 3 cut(s) 213, 236, 685
TseI GCWGC 4 cut(s) 27, 69, 129, 607
TspDTI ATGAA 2 cut(s) 111, 235
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 3 cut(s) 213, 236, 685
VneI GTGCAC 3 cut(s) 774, 807, 841
XapI RAATTY 2 cut(s) 275, 410
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.