Rh1DG380800

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003301
Physical Location & Seq
Forward (+)
60257753 .. 60258340
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG380800.1

Sequence Viewer

Length: 588 bp
ATGGATGAAAGGCTGATGGAGGCTTCTCGAAGCGGATATGTCCAACTTTTGAATCAATTGCTGGCAGAAAATCCAGACATACTCCATAGTGTTGCGCTGGCTTCGGGAGAGAACCCTTTACACATTGCTTCCTTGGCTGGCCATGTTGAGTTTGTTAAGGAGGTTCTAAGGTTGAAACCAGCTTTTGCTAAAGAAATCAACCAGGATTGTTATAGCCCGATGCATATTGCGTCTGCCAACGGGCATTTGGAGATTGTAAAGGAGCTGCTTCAAGTTGATCCAAGACTCTCCCAGCTTAAAGGAAGAGATCAATGTACAGCTCTTCATTATGCAGCTCGCAGAGGGAGGATAGAAATTATTAAAGAAATGGTTTCGGTTTGTTCAGAATGTGTCGAAGATGTGACCGAGCAAGGGGAGACTGTTTTTCACCTTGCTGTCAAGAACAACCAGTTTGAAACTATTGATGCTATGGTGGAATTGGTCCGTGACAGGAACAAACTAGACATCCTGAATATGAAAGATAATAATGGCAACTCAGTTCTTCACCTAGCAACCTGGAAGAAGCAACACCAGGCAAGTGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

195

Amino Acids

21.89

Weight (kDa)

5.84

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 5 - 91 6.1e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 74 - 121 7.5e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 100 - 159 8.9e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 4 cut(s) 52, 175, 272, 455
AjnI CCWGG 3 cut(s) 201, 554, 570
AluBI AGCT 5 cut(s) 182, 265, 295, 320, 335
AluI AGCT 5 cut(s) 182, 265, 295, 320, 335
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 265, 332
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 419, 536
AvaII GGWCC 1 cut(s) 481
BalI TGGCCA 1 cut(s) 141
BbvI GCAGC 2 cut(s) 252, 344
BccI CCATC 1 cut(s) 10
BciT130I CCWGG 3 cut(s) 203, 556, 572
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 2 cut(s) 500, 548
BisI GCNGC 2 cut(s) 266, 333
BlsI GCNGC 2 cut(s) 267, 334
Bme1390I CCNGG 3 cut(s) 203, 556, 572
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmrFI CCNGG 3 cut(s) 203, 556, 572
BmsI GCATC 2 cut(s) 210, 454
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 3 cut(s) 203, 556, 572
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 10, 504
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 448
BseXI GCAGC 2 cut(s) 252, 344
BseYI CCCAGC 1 cut(s) 291
BshFI GGCC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 1 cut(s) 410
BsnI GGCC 1 cut(s) 141
Bsp1407I TGTACA 1 cut(s) 314
Bsp143I GATC 2 cut(s) 277, 307
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 548
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 314
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 277, 307
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 203, 556, 572
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 2 cut(s) 298, 327
BstAUI TGTACA 1 cut(s) 314
BstC8I GCNNGC 4 cut(s) 63, 99, 139, 337
BstDEI CTNAG 2 cut(s) 167, 535
BstF5I GGATG 2 cut(s) 10, 504
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 280, 310
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 2 cut(s) 277, 307
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 3 cut(s) 203, 556, 572
BstSCI CCNGG 3 cut(s) 201, 554, 570
BstV1I GCAGC 2 cut(s) 252, 344
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 2 cut(s) 10, 504
Cac8I GCNNGC 4 cut(s) 63, 99, 139, 337
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 143
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 2 cut(s) 167, 535
DpnI GATC 2 cut(s) 279, 309
DpnII GATC 2 cut(s) 277, 307
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 298, 327
EarI CTCTTC 2 cut(s) 298, 327
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 481
EcoRII CCWGG 3 cut(s) 201, 554, 570
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 146
FaiI YATR 9 cut(s) 39, 80, 87, 144, 213, 225, 330, 470, 515
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 2 cut(s) 266, 333
FokI GGATG 2 cut(s) 17, 491
Fsp4HI GCNGC 2 cut(s) 266, 333
FspBI CTAG 2 cut(s) 500, 548
GlaI GCGC 1 cut(s) 96
GluI GCNGC 2 cut(s) 266, 333
GsaI CCCAGC 1 cut(s) 295
HaeIII GGCC 1 cut(s) 141
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HinfI GANTC 2 cut(s) 52, 285
HphI GGTGA 2 cut(s) 419, 536
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 5 cut(s) 27, 74, 105, 439, 508
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 223, 332, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 2 cut(s) 167, 535
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 2 cut(s) 277, 307
LguI GCTCTTC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 2 cut(s) 252, 344
LweI GCATC 2 cut(s) 210, 454
MaeI CTAG 2 cut(s) 500, 548
MaeIII GTNAC 2 cut(s) 400, 485
MalI GATC 2 cut(s) 279, 309
MboI GATC 2 cut(s) 277, 307
MboII GAAGA 5 cut(s) 314, 315, 407, 533, 571
MfeI CAATTG 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 4 cut(s) 56, 354, 476, 582
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 4 cut(s) 13, 154, 335, 339
Mox20I TGGCCA 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 225
MscI TGGCCA 1 cut(s) 141
MseI TTAA 3 cut(s) 156, 297, 360
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 3 cut(s) 203, 556, 572
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 3 cut(s) 203, 556, 572
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 2 cut(s) 277, 307
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 2 cut(s) 400, 485
NsiI ATGCAT 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 267, 334
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
Psp6I CCWGG 3 cut(s) 201, 554, 570
PspFI CCCAGC 1 cut(s) 291
PspGI CCWGG 3 cut(s) 201, 554, 570
PspPI GGNCC 1 cut(s) 481
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 3 cut(s) 156, 297, 360
SatI GCNGC 2 cut(s) 266, 333
Sau3AI GATC 2 cut(s) 277, 307
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 203, 556, 572
SfaNI GCATC 2 cut(s) 210, 454
SinI GGWCC 1 cut(s) 481
Sse9I AATT 4 cut(s) 56, 354, 476, 582
SsiI CCGC 1 cut(s) 33
SspMI CTAG 2 cut(s) 500, 548
StyD4I CCNGG 3 cut(s) 201, 554, 570
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 28, 393
TaqII GACCGA 1 cut(s) 419
TasI AATT 4 cut(s) 56, 354, 476, 582
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 3 cut(s) 156, 297, 360
Tru9I TTAA 3 cut(s) 156, 297, 360
TseFI GTSAC 2 cut(s) 400, 485
TseI GCWGC 2 cut(s) 265, 332
Tsp45I GTSAC 2 cut(s) 400, 485
TspDTI ATGAA 3 cut(s) 21, 314, 530
TspGWI ACGGA 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 2 cut(s) 500, 548
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.