Rw1G034910

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003301
Physical Location & Seq
Reverse (-)
62759395 .. 62760907
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034910.1

Sequence Viewer

Length: 1008 bp
ATGCATATTGCGTCTGCCAACGGGCATTTGGAGATTGTAAAGGAGCTGCTTCAAGTTGATCTAAGACTCTCCCAGCTTAAAGGAAGAGATCAATGTACAGCTCTTCATTATGCAGCTCGCAGAGGGAGGATAGAAATTATTAAAGAAATGGTTTCGGCTTGTTCAGAATGTGTCGAAGATATGACCGAGCAAGGGGAGACTGTTTTTCACCTTGCTGTCAAGAACAACCAGTTTGAAGCTATTGATGCTATGGTGGAATTGGTGGTGCAATGTTTACTTGCCAATAACAGAACTAGTACTCCGGGTACATTGGACGTAAACAGTGTGAATCAGAGTGGTCTAACAGCTCTTGATCTGCTACTAATCTTCCCTAGTGGAGCCGGTGACCTGGAGATCGATGGAATCCTTCGCGGTGCAGGAGCTTTGAGAGCACGAGACATAGCCCACACTAATCACAACCATACCGTATTAAGTGTCCCCGCAGCATCAGAGAGCCATGATAGTTTGCTCATGGACCCAAAAAATTTGCTGGAGTACTTCAAGTTCAAAAGGGGCAGAGACTCTCCTGATGACGCACGAACCGCTCTGTTAGTCGTGGCAGTACTGGTGGCTACGGCAACCTATGACACTGCAATAAACCCTCCAGGTGGTCTTTGGCAGGACACAAACTTAAGCAAGAATGGGACTGATCCACCACACCTTGTCGGGACGGCAAATATCGCCTCTTATAACACAGCTTACTACGTCGTTGGGGCGGTTTTCAACTCCATAGGGTTTTCAGTTTCTCTTCACATGATCAATATCCTCACAACCAATTTCCCTTTGCGGTTGGAGCTTCAAGTTTGTGGTGTTGCAATGTACTTTACGTACGTCACTGCATTGATTACTATATCTCCAGGTTTGACCTCAGGGTGGTACACATTGTTTGTACTTGTGCCATTTCTGCCTATGGTGGTACTACTTGCCGTGAGGTTTATCATCAAGCTTACAGAACCTCTGCGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

335

Amino Acids

36.52

Weight (kDa)

5.66

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 1 - 86 3.3e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 1 - 48 1.8e-06 Ankyrin repeats (many copies)
PGG PF13962 191 - 295 2.3e-14 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
AccBSI CCGCTC 1 cut(s) 584
AccII CGCG 1 cut(s) 411
AciI CCGC 5 cut(s) 411, 480, 582, 755, 826
AclWI GGATC 1 cut(s) 683
AcsI RAATTY 1 cut(s) 523
AfiI CCNNNNNNNGG 3 cut(s) 192, 647, 912
AflII CTTAAG 1 cut(s) 670
AgsI TTSAA 6 cut(s) 53, 236, 541, 547, 763, 839
AhlI ACTAGT 1 cut(s) 293
AjnI CCWGG 3 cut(s) 387, 643, 895
AloI GAACNNNNNNTCC 2 cut(s) 283, 315
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 3 cut(s) 191, 429, 552
AlwI GGATC 1 cut(s) 683
ApeKI GCWGC 3 cut(s) 46, 113, 482
ApoI RAATTY 1 cut(s) 523
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 200, 395
AvaII GGWCC 1 cut(s) 514
AxyI CCTNAGG 1 cut(s) 907
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 3 cut(s) 33, 125, 494
BccI CCATC 1 cut(s) 392
BceAI ACGGC 3 cut(s) 630, 726, 950
BciT130I CCWGG 3 cut(s) 389, 645, 897
BclI TGATCA 1 cut(s) 795
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 191, 429, 552
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 2 cut(s) 294, 372
BfrI CTTAAG 1 cut(s) 670
BisI GCNGC 3 cut(s) 47, 114, 483
BlsI GCNGC 3 cut(s) 48, 115, 484
BmcAI AGTACT 3 cut(s) 298, 536, 603
Bme1390I CCNGG 4 cut(s) 303, 389, 645, 897
Bme18I GGWCC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 379, 516
BmrFI CCNGG 4 cut(s) 303, 389, 645, 897
BmsI GCATC 2 cut(s) 235, 494
BpmI CTGGAG 4 cut(s) 410, 551, 627, 879
BpuMI CCSGG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 867
BsaBI GATNNNNATC 1 cut(s) 800
BsaXI ACNNNNNCTCC 4 cut(s) 283, 313, 877, 907
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 647, 912
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 229, 609
Bse21I CCTNAGG 1 cut(s) 907
Bse3DI GCAATG 2 cut(s) 275, 861
Bse8I GATNNNNATC 1 cut(s) 800
BseBI CCWGG 3 cut(s) 389, 645, 897
BseCI ATCGAT 1 cut(s) 396
BseJI GATNNNNATC 1 cut(s) 800
BseLI CCNNNNNNNGG 3 cut(s) 192, 647, 912
BseMI GCAATG 2 cut(s) 275, 861
BseMII CTCAG 1 cut(s) 921
BseNI ACTGG 2 cut(s) 229, 609
BseXI GCAGC 3 cut(s) 33, 125, 494
BseYI CCCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 411
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 2 cut(s) 302, 381
BsiWI CGTACG 1 cut(s) 867
BslFI GGGAC 3 cut(s) 461, 697, 721
BslI CCNNNNNNNGG 3 cut(s) 192, 647, 912
BsmAI GTCTC 3 cut(s) 191, 429, 552
BsmFI GGGAC 3 cut(s) 461, 697, 721
Bsp1286I GDGCHC 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 6 cut(s) 58, 88, 352, 393, 688, 795
BspACI CCGC 5 cut(s) 411, 480, 582, 755, 826
BspCNI CTCAG 1 cut(s) 920
BspDI ATCGAT 1 cut(s) 396
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 2 cut(s) 379, 516
BspPI GGATC 1 cut(s) 683
BspQI GCTCTTC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 670
BsrBI CCGCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 275, 861
BsrFI RCCGGY 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 2 cut(s) 229, 609
BssAI RCCGGY 1 cut(s) 380
BssMI GATC 6 cut(s) 58, 88, 352, 393, 688, 795
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 389, 645, 897
Bst4CI ACNGT 3 cut(s) 202, 323, 466
Bst6I CTCTTC 3 cut(s) 79, 108, 792
BstAFI CTTAAG 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 95
BstBAI YACGTR 1 cut(s) 867
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 62, 907
BstEII GGTNACC 1 cut(s) 383
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 6 cut(s) 61, 91, 355, 396, 691, 798
BstMAI GTCTC 3 cut(s) 191, 429, 552
BstMBI GATC 6 cut(s) 58, 88, 352, 393, 688, 795
BstMWI GCNNNNNNNGC 6 cut(s) 245, 428, 581, 719, 832, 943
BstNI CCWGG 3 cut(s) 389, 645, 897
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 4 cut(s) 301, 387, 643, 895
BstSNI TACGTA 1 cut(s) 867
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 3 cut(s) 33, 125, 494
Bsu15I ATCGAT 1 cut(s) 396
Bsu36I CCTNAGG 1 cut(s) 907
BsuTUI ATCGAT 1 cut(s) 396
BtsI GCAGTG 2 cut(s) 627, 873
BtsIMutI CAGTG 3 cut(s) 328, 627, 873
Cac8I GCNNGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 514
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 1 cut(s) 581
CviAII CATG 3 cut(s) 497, 511, 793
DdeI CTNAG 2 cut(s) 62, 907
DpnI GATC 6 cut(s) 60, 90, 354, 395, 690, 797
DpnII GATC 6 cut(s) 58, 88, 352, 393, 688, 795
Eam1104I CTCTTC 3 cut(s) 79, 108, 792
EarI CTCTTC 3 cut(s) 79, 108, 792
Eco105I TACGTA 1 cut(s) 867
Eco47I GGWCC 1 cut(s) 514
Eco81I CCTNAGG 1 cut(s) 907
Eco91I GGTNACC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 383
EcoRII CCWGG 3 cut(s) 387, 643, 895
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 500, 514, 796
FaqI GGGAC 3 cut(s) 461, 697, 721
FatI CATG 3 cut(s) 496, 510, 792
FauI CCCGC 1 cut(s) 487
FbaI TGATCA 1 cut(s) 795
Fnu4HI GCNGC 3 cut(s) 47, 114, 483
Fsp4HI GCNGC 3 cut(s) 47, 114, 483
FspBI CTAG 2 cut(s) 294, 372
GluI GCNGC 3 cut(s) 47, 114, 483
GsaI CCCAGC 1 cut(s) 76
GsuI CTGGAG 4 cut(s) 410, 551, 627, 879
HapII CCGG 2 cut(s) 302, 381
HgaI GACGC 1 cut(s) 581
Hin1II CATG 3 cut(s) 500, 514, 796
HindIII AAGCTT 1 cut(s) 983
HinfI GANTC 4 cut(s) 66, 328, 402, 560
HpaII CCGG 2 cut(s) 302, 381
HphI GGTGA 2 cut(s) 200, 395
Hpy166II GTNNAC 3 cut(s) 275, 319, 918
Hpy188I TCNGA 3 cut(s) 166, 333, 490
Hpy188III TCNNGA 4 cut(s) 220, 350, 566, 706
Hpy8I GTNNAC 3 cut(s) 275, 319, 918
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 3 cut(s) 202, 323, 466
HpyCH4IV ACGT 4 cut(s) 315, 744, 866, 870
HpyCH4V TGCA 7 cut(s) 4, 113, 268, 416, 632, 854, 878
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 428, 581, 719, 832, 943
HpyF3I CTNAG 2 cut(s) 62, 907
HpySE526I ACGT 4 cut(s) 315, 744, 866, 870
Hsp92II CATG 3 cut(s) 500, 514, 796
Ksp22I TGATCA 1 cut(s) 795
Kzo9I GATC 6 cut(s) 58, 88, 352, 393, 688, 795
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 4 cut(s) 43, 377, 419, 832
Lsp1109I GCAGC 3 cut(s) 33, 125, 494
LweI GCATC 2 cut(s) 235, 494
MaeI CTAG 2 cut(s) 294, 372
MaeII ACGT 4 cut(s) 315, 744, 866, 870
MaeIII GTNAC 2 cut(s) 383, 871
MalI GATC 6 cut(s) 60, 90, 354, 395, 690, 797
MbiI CCGCTC 1 cut(s) 584
MboI GATC 6 cut(s) 58, 88, 352, 393, 688, 795
MboII GAAGA 5 cut(s) 95, 96, 188, 358, 779
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 5 cut(s) 135, 257, 523, 814, 1003
MlyI GAGTC 2 cut(s) 60, 554
MmeI TCCRAC 1 cut(s) 810
MnlI CCTC 8 cut(s) 116, 120, 651, 733, 815, 916, 963, 1005
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 78, 141, 470, 671
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 2 cut(s) 302, 381
MspR9I CCNGG 4 cut(s) 303, 389, 645, 897
MvaI CCWGG 3 cut(s) 389, 645, 897
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 6 cut(s) 245, 428, 581, 719, 832, 943
NciI CCSGG 1 cut(s) 303
NdeII GATC 6 cut(s) 58, 88, 352, 393, 688, 795
NlaIII CATG 3 cut(s) 500, 514, 796
NlaIV GGNNCC 2 cut(s) 379, 516
NmuCI GTSAC 2 cut(s) 383, 871
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 2 cut(s) 328, 402
Pfl23II CGTACG 1 cut(s) 867
PkrI GCNGC 3 cut(s) 48, 115, 484
PleI GAGTC 2 cut(s) 60, 554
PpsI GAGTC 2 cut(s) 60, 554
Ppu21I YACGTR 1 cut(s) 867
PsiI TTATAA 1 cut(s) 729
Psp6I CCWGG 3 cut(s) 387, 643, 895
PspEI GGTNACC 1 cut(s) 383
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 3 cut(s) 387, 643, 895
PspLI CGTACG 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 379, 516
PspPI GGNCC 1 cut(s) 514
PsrI GAACNNNNNNTAC 2 cut(s) 527, 559
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 78, 141, 470, 671
SatI GCNGC 3 cut(s) 47, 114, 483
Sau3AI GATC 6 cut(s) 58, 88, 352, 393, 688, 795
Sau96I GGNCC 1 cut(s) 514
ScaI AGTACT 3 cut(s) 298, 536, 603
SchI GAGTC 2 cut(s) 60, 554
ScrFI CCNGG 4 cut(s) 303, 389, 645, 897
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 2 cut(s) 235, 494
SinI GGWCC 1 cut(s) 514
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
SnaBI TACGTA 1 cut(s) 867
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 5 cut(s) 135, 257, 523, 814, 1003
SsiI CCGC 5 cut(s) 411, 480, 582, 755, 826
SspMI CTAG 2 cut(s) 294, 372
StyD4I CCNGG 4 cut(s) 301, 387, 643, 895
TaaI ACNGT 3 cut(s) 202, 323, 466
TaiI ACGT 4 cut(s) 318, 747, 869, 873
TaqI TCGA 2 cut(s) 174, 396
TaqII GACCGA 1 cut(s) 200
TasI AATT 5 cut(s) 135, 257, 523, 814, 1003
TatI WGTACW 6 cut(s) 95, 296, 534, 601, 858, 928
TfiI GAWTC 2 cut(s) 328, 402
Tru1I TTAA 4 cut(s) 78, 141, 470, 671
Tru9I TTAA 4 cut(s) 78, 141, 470, 671
TscAI CASTG 3 cut(s) 328, 634, 880
TseFI GTSAC 2 cut(s) 383, 871
TseI GCWGC 3 cut(s) 46, 113, 482
Tsp45I GTSAC 2 cut(s) 383, 871
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 3 cut(s) 328, 634, 880
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 1 cut(s) 523
XcmI CCANNNNNNNNNTGG 2 cut(s) 25, 651
XspI CTAG 2 cut(s) 294, 372
ZrmI AGTACT 3 cut(s) 298, 536, 603
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.