RchiOBHm_Chr1g0373291

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003301
Physical Location & Seq
Forward (+)
61605260 .. 61606588
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59719

Sequence Viewer

Length: 594 bp
ATGCATATTGCGTCTGCCAACGGCCATTTGGAGATTGTAAAGGAGCTGCTTCAAGTTGATCGAAGACTCTCCCAGGTTAAAGGAAGAGATCAATGTACAGCTCTTCATTATGCAGCTCGCAGAGGGAGGATAGAAATTATTAAAGAAATGGTTTCGGCTTGTTCAGAATGTGTCGAAGATGTGACCGAGCAAGGGGAGACTGTTTTTCACCTTGCTGTCAAGAACAACCAGTTTGAAGCTATTGATGCTATGGTGGAATTGGTGGTGCAATGTTTACTTGCCAATAAAGGAACTAGTACTCCGGGTACATTGGACGTAAACAGTGTGAACCAGAGTGGCCTAACAGCTCTTGATCTGCTACTAATCTTCCCTAGTGGAGCCGGTGACCTGGAGATCGATGGAATCCTGAGCGGTGCAGGAGCTTTGAGAGCACGAGACATAGCCCACACTAATCACAACCTTACCGTATTAAGTGTCCCCGCAGCATCAGAGAGCCATGATATAGTTTGCTCATGGACCCAAAAAGTTTGGTGGAGTACTTCAAGTTCAAAAGGGTCAGAGACTCTCCTGATGACGCACGAACCGCTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

197

Amino Acids

21.29

Weight (kDa)

5.28

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 1 - 86 1.4e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 1 - 48 1.3e-06 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 411, 586
AciI CCGC 3 cut(s) 411, 480, 584
AcoI YGGCCR 1 cut(s) 22
AfaI GTAC 4 cut(s) 97, 298, 307, 538
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 4 cut(s) 53, 236, 543, 549
AhlI ACTAGT 1 cut(s) 293
AjnI CCWGG 2 cut(s) 72, 387
AloI GAACNNNNNNTCC 2 cut(s) 283, 315
AluBI AGCT 6 cut(s) 46, 101, 116, 239, 347, 422
AluI AGCT 6 cut(s) 46, 101, 116, 239, 347, 422
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 3 cut(s) 191, 429, 554
AoxI GGCC 2 cut(s) 22, 337
ApeKI GCWGC 3 cut(s) 46, 113, 482
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 200, 395
AvaII GGWCC 1 cut(s) 516
BauI CACGAG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 3 cut(s) 33, 125, 494
BccI CCATC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 2 cut(s) 74, 389
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 191, 429, 554
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 2 cut(s) 294, 372
BisI GCNGC 3 cut(s) 47, 114, 483
BlsI GCNGC 3 cut(s) 48, 115, 484
BmcAI AGTACT 2 cut(s) 298, 538
Bme1390I CCNGG 3 cut(s) 74, 303, 389
Bme18I GGWCC 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 2 cut(s) 379, 518
BmrFI CCNGG 3 cut(s) 74, 303, 389
BmsI GCATC 2 cut(s) 235, 494
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 74, 389
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 3 cut(s) 33, 125, 494
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 2 cut(s) 24, 339
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 2 cut(s) 302, 381
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 3 cut(s) 191, 429, 554
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 2 cut(s) 24, 339
Bsp1286I GDGCHC 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 4 cut(s) 58, 88, 352, 393
BspACI CCGC 3 cut(s) 411, 480, 584
BspANI GGCC 2 cut(s) 24, 339
BspCNI CTCAG 1 cut(s) 399
BspDI ATCGAT 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 379, 518
BspQI GCTCTTC 1 cut(s) 108
BsrBI CCGCTC 2 cut(s) 411, 586
BsrDI GCAATG 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 58, 88, 352, 393
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 74, 389
Bst4CI ACNGT 3 cut(s) 202, 323, 466
Bst6I CTCTTC 2 cut(s) 79, 108
BstAUI TGTACA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 407
BstEII GGTNACC 1 cut(s) 383
BstKTI GATC 4 cut(s) 61, 91, 355, 396
BstMAI GTCTC 3 cut(s) 191, 429, 554
BstMBI GATC 4 cut(s) 58, 88, 352, 393
BstMWI GCNNNNNNNGC 3 cut(s) 245, 428, 583
BstNI CCWGG 2 cut(s) 74, 389
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 3 cut(s) 72, 301, 387
BstV1I GCAGC 3 cut(s) 33, 125, 494
BstV2I GAAGAC 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 2 cut(s) 24, 339
BsuTUI ATCGAT 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 516
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 1 cut(s) 583
Csp6I GTAC 4 cut(s) 96, 297, 306, 537
CviAII CATG 2 cut(s) 497, 513
CviQI GTAC 4 cut(s) 96, 297, 306, 537
DdeI CTNAG 1 cut(s) 407
DpnI GATC 4 cut(s) 60, 90, 354, 395
DpnII GATC 4 cut(s) 58, 88, 352, 393
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 79, 108
EarI CTCTTC 2 cut(s) 79, 108
Eco47I GGWCC 1 cut(s) 516
Eco91I GGTNACC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 72, 387
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 500, 516
FaiI YATR 7 cut(s) 6, 111, 251, 440, 498, 503, 514
FaqI GGGAC 1 cut(s) 461
FatI CATG 2 cut(s) 496, 512
FauI CCCGC 1 cut(s) 487
Fnu4HI GCNGC 3 cut(s) 47, 114, 483
Fsp4HI GCNGC 3 cut(s) 47, 114, 483
FspBI CTAG 2 cut(s) 294, 372
GluI GCNGC 3 cut(s) 47, 114, 483
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 2 cut(s) 24, 339
HapII CCGG 2 cut(s) 302, 381
HgaI GACGC 1 cut(s) 583
Hin1II CATG 2 cut(s) 500, 516
HinfI GANTC 3 cut(s) 66, 402, 562
HpaII CCGG 2 cut(s) 302, 381
HphI GGTGA 2 cut(s) 200, 395
Hpy166II GTNNAC 3 cut(s) 275, 319, 328
Hpy188I TCNGA 3 cut(s) 166, 490, 559
Hpy188III TCNNGA 4 cut(s) 220, 350, 406, 568
Hpy8I GTNNAC 3 cut(s) 275, 319, 328
HpyCH4III ACNGT 3 cut(s) 202, 323, 466
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 4 cut(s) 4, 113, 268, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 428, 583
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 500, 516
Kzo9I GATC 4 cut(s) 58, 88, 352, 393
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 3 cut(s) 43, 377, 419
Lsp1109I GCAGC 3 cut(s) 33, 125, 494
LweI GCATC 2 cut(s) 235, 494
MaeI CTAG 2 cut(s) 294, 372
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 181, 383
MalI GATC 4 cut(s) 60, 90, 354, 395
MbiI CCGCTC 2 cut(s) 411, 586
MboI GATC 4 cut(s) 58, 88, 352, 393
MboII GAAGA 5 cut(s) 75, 95, 96, 188, 358
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 2 cut(s) 135, 257
MlyI GAGTC 2 cut(s) 60, 556
MnlI CCTC 2 cut(s) 116, 120
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 78, 141, 470
MspI CCGG 2 cut(s) 302, 381
MspR9I CCNGG 3 cut(s) 74, 303, 389
MvaI CCWGG 2 cut(s) 74, 389
MwoI GCNNNNNNNGC 3 cut(s) 245, 428, 583
NciI CCSGG 1 cut(s) 303
NdeII GATC 4 cut(s) 58, 88, 352, 393
NlaIII CATG 2 cut(s) 500, 516
NlaIV GGNNCC 2 cut(s) 379, 518
NmuCI GTSAC 2 cut(s) 181, 383
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 3 cut(s) 48, 115, 484
PleI GAGTC 2 cut(s) 60, 556
PpsI GAGTC 2 cut(s) 60, 556
Psp6I CCWGG 2 cut(s) 72, 387
PspEI GGTNACC 1 cut(s) 383
PspGI CCWGG 2 cut(s) 72, 387
PspN4I GGNNCC 2 cut(s) 379, 518
PspPI GGNCC 1 cut(s) 516
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
RsaI GTAC 4 cut(s) 97, 298, 307, 538
RsaNI GTAC 4 cut(s) 96, 297, 306, 537
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 78, 141, 470
SatI GCNGC 3 cut(s) 47, 114, 483
Sau3AI GATC 4 cut(s) 58, 88, 352, 393
Sau96I GGNCC 1 cut(s) 516
ScaI AGTACT 2 cut(s) 298, 538
SchI GAGTC 2 cut(s) 60, 556
ScrFI CCNGG 3 cut(s) 74, 303, 389
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 2 cut(s) 235, 494
SinI GGWCC 1 cut(s) 516
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 2 cut(s) 135, 257
SsiI CCGC 3 cut(s) 411, 480, 584
SspMI CTAG 2 cut(s) 294, 372
StyD4I CCNGG 3 cut(s) 72, 301, 387
TaaI ACNGT 3 cut(s) 202, 323, 466
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 61, 174, 396
TaqII GACCGA 1 cut(s) 200
TasI AATT 2 cut(s) 135, 257
TatI WGTACW 3 cut(s) 95, 296, 536
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 3 cut(s) 78, 141, 470
Tru9I TTAA 3 cut(s) 78, 141, 470
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 2 cut(s) 181, 383
TseI GCWGC 3 cut(s) 46, 113, 482
Tsp45I GTSAC 2 cut(s) 181, 383
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 2 cut(s) 294, 372
ZrmI AGTACT 2 cut(s) 298, 538
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.