Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000170.1

Orthogroup ID

OG0003301

Physical Location & Seq

Genomic Coordinates Reverse (-)

3554 .. 4129

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000170.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ctgattgaggcttctcgaagcggaaatgtccaacttttgaagcaattgctggcagaaaatccagacatactccatagtgttgcgctggcttcgggagagaaccctttacacattgcttccttggctggccatgttgagtttgttaaggaggttctaaggttgaaaccagcttttgctaaagaaatcaaccaggattgttatagcccgatgcatattgcgtctgccaacggccatttggagattgtaaaggagctgcttcaagttgatcgaagactctcccaggttaaaggaagagatcaatgtacagctcttcattatgcagctcgcagagggaggatagaaattattaaagaaatggtttcggcttgttcagaatgtgtcgaagatgtgaccgagcaaggggagactgtttttcaccttgctgtcaagaacaaccagtttgaagctattgatgctatggtggaattggtccttgaaaggaacaaacttgacatcctgaatatgaaagataataatggcaactcagttcttcacctagcaacctggaagaagcaacaccaggcaagtgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

191

Amino Acids

21.26

Weight (kDa)

6.15

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14480 AT1G14480 AT1G14500 AT4G10720 AT4G10720 AT5G15500 AT5G15500 AT5G54610 AT5G54620
fragaria_vesca	FvH4_7g26700
malus_domestica	MD04G1235200.v1.1
prunus_persica	Prupe.5G057700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373291 RchiOBHm_Chr7g0205421
rosa_laevigata	RLG00000003382 RLG00000026829
rosa_multiflora	Rmu_sc0000170.1_g000001 Rmu_sc0006687.1_g000001 Rmu_sc0021015.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252390 Rroxscaffold_4G00284290
rosa_rugosa	Rorug01G0376900 Rorug07G0091300
rosa_samantha	Rh1AG385800 Rh1AG386000 Rh1BG350000 Rh1DG380800 Rh1DG381000 Rh7AG221300 Rh7BG217400 Rh7CG234200 Rh7CG234300 Rh7DG228100
rosa_wichuraiana	Rw1G034910 Rw7G019110 Rw7G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	127, 229
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	5 cut(s)	40, 163, 260, 443, 476
AjnI	CCWGG	4 cut(s)	189, 279, 542, 558
AluBI	AGCT	5 cut(s)	170, 253, 308, 323, 446
AluI	AGCT	5 cut(s)	170, 253, 308, 323, 446
Alw26I	GTCTC	1 cut(s)	398
AoxI	GGCC	2 cut(s)	127, 229
ApeKI	GCWGC	2 cut(s)	253, 320
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	407, 524
AvaII	GGWCC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	240, 332
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	4 cut(s)	191, 281, 544, 560
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	536
BisI	GCNGC	2 cut(s)	254, 321
BlsI	GCNGC	2 cut(s)	255, 322
Bme1390I	CCNGG	4 cut(s)	191, 281, 544, 560
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmrFI	CCNGG	4 cut(s)	191, 281, 544, 560
BmsI	GCATC	2 cut(s)	198, 442
BpiI	GAAGAC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	120, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	436
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	4 cut(s)	191, 281, 544, 560
BseDI	CCNNGG	2 cut(s)	120, 279
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	240, 332
BshFI	GGCC	2 cut(s)	129, 231
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	2 cut(s)	129, 231
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	265, 295
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	129, 231
BspCNI	CTCAG	1 cut(s)	536
BspQI	GCTCTTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	120, 279
BssMI	GATC	2 cut(s)	265, 295
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	4 cut(s)	191, 281, 544, 560
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	2 cut(s)	286, 315
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	51, 87, 127, 325
BstDEI	CTNAG	2 cut(s)	155, 523
BstF5I	GGATG	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	268, 298
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	265, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 452
BstNI	CCWGG	4 cut(s)	191, 281, 544, 560
BstSCI	CCNGG	4 cut(s)	189, 279, 542, 558
BstV1I	GCAGC	2 cut(s)	240, 332
BstV2I	GAAGAC	1 cut(s)	277
BsuRI	GGCC	2 cut(s)	129, 231
BtsCI	GGATG	1 cut(s)	492
Cac8I	GCNNGC	4 cut(s)	51, 87, 127, 325
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	155, 523
DpnI	GATC	2 cut(s)	267, 297
DpnII	GATC	2 cut(s)	265, 295
EaeI	YGGCCR	2 cut(s)	127, 229
Eam1104I	CTCTTC	2 cut(s)	286, 315
EarI	CTCTTC	2 cut(s)	286, 315
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	469
EcoRII	CCWGG	4 cut(s)	189, 279, 542, 558
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	134
FaiI	YATR	8 cut(s)	68, 75, 132, 201, 213, 318, 458, 503
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	254, 321
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	254, 321
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	254, 321
HaeIII	GGCC	2 cut(s)	129, 231
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	273
HphI	GGTGA	2 cut(s)	407, 524
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	5 cut(s)	15, 62, 93, 427, 496
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	3 cut(s)	211, 320, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 452
HpyF3I	CTNAG	2 cut(s)	155, 523
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	265, 295
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	2 cut(s)	240, 332
LweI	GCATC	2 cut(s)	198, 442
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	267, 297
MboI	GATC	2 cut(s)	265, 295
MboII	GAAGA	6 cut(s)	282, 302, 303, 395, 521, 559
MfeI	CAATTG	1 cut(s)	44
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	4 cut(s)	44, 342, 464, 570
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	3 cut(s)	142, 323, 327
Mox20I	TGGCCA	1 cut(s)	129
Mph1103I	ATGCAT	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	3 cut(s)	144, 285, 348
Msp20I	TGGCCA	1 cut(s)	129
MspR9I	CCNGG	4 cut(s)	191, 281, 544, 560
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	4 cut(s)	191, 281, 544, 560
MwoI	GCNNNNNNNGC	2 cut(s)	122, 452
NdeII	GATC	2 cut(s)	265, 295
NlaIII	CATG	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	388
NsiI	ATGCAT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	255, 322
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp6I	CCWGG	4 cut(s)	189, 279, 542, 558
PspGI	CCWGG	4 cut(s)	189, 279, 542, 558
PspPI	GGNCC	1 cut(s)	469
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	144, 285, 348
SatI	GCNGC	2 cut(s)	254, 321
Sau3AI	GATC	2 cut(s)	265, 295
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	4 cut(s)	191, 281, 544, 560
SfaNI	GCATC	2 cut(s)	198, 442
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	4 cut(s)	44, 342, 464, 570
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	4 cut(s)	189, 279, 542, 558
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	16, 268, 381
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	4 cut(s)	44, 342, 464, 570
TatI	WGTACW	1 cut(s)	302
Tru1I	TTAA	3 cut(s)	144, 285, 348
Tru9I	TTAA	3 cut(s)	144, 285, 348
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	2 cut(s)	253, 320
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	302, 518
VpaK11BI	GGWCC	1 cut(s)	469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	536
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.