Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003301

Physical Location & Seq

Genomic Coordinates Forward (+)

61656953 .. 61657234

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG385800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCATATTGCGTCTGCCAACGGGCATTTGGAGATTGTAAAGGAGCTGCTTCAAGTTGATCTAAGACTCTCCCAGCTTAAAGGAAGAGATCAATGTACAGCTCTTCATTATGCAGCTCGCAGAGGGAGGATAGAAATTATTAAAGAAATGGTTTCGGCTTGTTCAGAATGTGTCGAAGATGTGACCGAGCAAGGGGAGACTGTTTTTCACCTTGCTGTCAAGAACAACCAGTTTGAAGCTATTGATGCTATGGTGGAATTGGTCCGTGAAAGGAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 PGG

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

5.51

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	1 - 86	1e-15	Ankyrin repeats (3 copies)
Ank_4	PF13637	1 - 48	1.4e-07	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14480 AT1G14480 AT1G14500 AT4G10720 AT4G10720 AT5G15500 AT5G15500 AT5G54610 AT5G54620
fragaria_vesca	FvH4_7g26700
malus_domestica	MD04G1235200.v1.1
prunus_persica	Prupe.5G057700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373291 RchiOBHm_Chr7g0205421
rosa_laevigata	RLG00000003382 RLG00000026829
rosa_multiflora	Rmu_sc0000170.1_g000001 Rmu_sc0006687.1_g000001 Rmu_sc0021015.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252390 Rroxscaffold_4G00284290
rosa_rugosa	Rorug01G0376900 Rorug07G0091300
rosa_samantha	Rh1AG385800 Rh1AG386000 Rh1BG350000 Rh1DG380800 Rh1DG381000 Rh7AG221300 Rh7BG217400 Rh7CG234200 Rh7CG234300 Rh7DG228100
rosa_wichuraiana	Rw1G034910 Rw7G019110 Rw7G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	53, 236
AluBI	AGCT	5 cut(s)	46, 76, 101, 116, 239
AluI	AGCT	5 cut(s)	46, 76, 101, 116, 239
Alw26I	GTCTC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	46, 113
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	33, 125
BcoDI	GTCTC	1 cut(s)	191
BisI	GCNGC	2 cut(s)	47, 114
BlsI	GCNGC	2 cut(s)	48, 115
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmsI	GCATC	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	33, 125
BseYI	CCCAGC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	58, 88
BspQI	GCTCTTC	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	58, 88
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	79, 108
BstAUI	TGTACA	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	61, 91
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	2 cut(s)	58, 88
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	33, 125
Cac8I	GCNNGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	96
CviJI	RGCY	6 cut(s)	46, 76, 101, 116, 158, 239
CviKI_1	RGCY	6 cut(s)	46, 76, 101, 116, 158, 239
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	2 cut(s)	60, 90
DpnII	GATC	2 cut(s)	58, 88
Eam1104I	CTCTTC	2 cut(s)	79, 108
EarI	CTCTTC	2 cut(s)	79, 108
Eco47I	GGWCC	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	3 cut(s)	6, 111, 251
Fnu4HI	GCNGC	2 cut(s)	47, 114
Fsp4HI	GCNGC	2 cut(s)	47, 114
GluI	GCNGC	2 cut(s)	47, 114
GsaI	CCCAGC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	4, 113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	58, 88
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	2 cut(s)	86, 242
Lsp1109I	GCAGC	2 cut(s)	33, 125
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	60, 90
MboI	GATC	2 cut(s)	58, 88
MboII	GAAGA	3 cut(s)	95, 96, 188
MluCI	AATT	2 cut(s)	135, 257
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	2 cut(s)	116, 120
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	78, 141
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	2 cut(s)	58, 88
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	48, 115
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	78, 141
SatI	GCNGC	2 cut(s)	47, 114
Sau3AI	GATC	2 cut(s)	58, 88
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	60
SetI	ASST	6 cut(s)	48, 78, 103, 118, 213, 241
SfaNI	GCATC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	2 cut(s)	135, 257
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	174
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	135, 257
TatI	WGTACW	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	78, 141
Tru9I	TTAA	2 cut(s)	78, 141
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	46, 113
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.