Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003301

Physical Location & Seq

Genomic Coordinates Forward (+)

20119204 .. 20120659

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGATGAAAGGCTGATTGAGGCTTCTCGAAGCGGCAATGTCCAACTTCTGCATCAGTTGCTGGTTGCGAATCCAGTCATACTCCATAGTGTCGCGCTGGCTTCGGGAGAGAACCCTTTACACATTGCTTCCTTGGCTGGCCATGTTGAGTTTGTAAAGGAGGTTCTGAGGTTGAAGCCAGCTTTTGCTAAAGAAATCAACCAGGATTGTTTTACCCCCATGCACATTGCGTCCGCCAACGGGTATGTGGATATTGCAAAAGAACTGCTTCTAGTTGATCCAAGACTCTCCCAGCTTAAAGGAAAAGACCAATGGACAGCTCTTCATTTTGCAGCTAGCAGAGGGAGGATAGACATTATTAAAGAGATGGTTTCGGCTTGTTCAGAATGCGTCGAAGATGTGACCGAGCAAGGGGAGACTGTTTTTCACCTTGCTGTTAAGAACAACAGGTTTGAAGCTATGGAAGCAATGGTGGGATTGGTTGTGCGATGTTTACTTGCCATCAACGGAACTAGTACTCCTGCTACATTGGACGTAAACAGTGTAAACCAGAGCGGTCTAACAGCTCTTGATCTGCTACTGATCTTCCCAAGTGGAGCCGGCGATCTGGAGATCGACAGCATCCTTCGTGGTTCAGGAGCTTTGAGAGCACGAGACATAGTCCACACTAATCACAACCATACCGTATTAAGTATCCCTGACGAGAGCCAGCATAGTCTGCAAACGGACCCAAAAAATTTGGTCGAGTACTTCAAGTTCAGAAGGGGCAGAGACTCTCCTGATGATGCAAGAAACGCTCTGTTAGTTGTGGCAGTACTAGTGGCTACAGCAACCTATGAAACTGCACTAAACCCTCCAGGTGGTCTTTGGCCGGACACAAACTTAAGCAAGAATGGTACTGAGCCACTACAGGGATACAACCTAGCTTACTTCTTCATAGGAGCAGTTTACAACTCCATCGGGTTTTCGGTTTCTCTTTACATAATCAATATCCTCACAACCAATTTCCCTTTGCGGTTGGAGCTCCAAGTTTGTATCGGAGGAATGTACGCTACGTACATCAATGCATTGGTCGCTATTTCTCCTGATTTGATACAGTCGTACGTATTGTTTGTACTTGTGTTTGTGCTTGTGCCACTTCTGCCTATGGTGGTACTACTTGCCGTCAGGCTTATCATCAGGCTTACACAACCTCTGCGAAATCGGCTGTGGACCTTCGGTTTTCTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

411

Amino Acids

44.99

Weight (kDa)

5.77

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	5 - 90	4.7e-11	Ankyrin repeats (3 copies)
Ank_2	PF12796	92 - 158	1.8e-08	Ankyrin repeats (3 copies)
PGG	PF13962	261 - 336	5.8e-14	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14480 AT1G14480 AT1G14500 AT4G10720 AT4G10720 AT5G15500 AT5G15500 AT5G54610 AT5G54620
fragaria_vesca	FvH4_7g26700
malus_domestica	MD04G1235200.v1.1
prunus_persica	Prupe.5G057700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373291 RchiOBHm_Chr7g0205421
rosa_laevigata	RLG00000003382 RLG00000026829
rosa_multiflora	Rmu_sc0000170.1_g000001 Rmu_sc0006687.1_g000001 Rmu_sc0021015.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252390 Rroxscaffold_4G00284290
rosa_rugosa	Rorug01G0376900 Rorug07G0091300
rosa_samantha	Rh1AG385800 Rh1AG386000 Rh1BG350000 Rh1DG380800 Rh1DG381000 Rh7AG221300 Rh7BG217400 Rh7CG234200 Rh7CG234300 Rh7DG228100
rosa_wichuraiana	Rw1G034910 Rw7G019110 Rw7G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	555
AccII	CGCG	1 cut(s)	95
AciI	CCGC	4 cut(s)	33, 234, 555, 1015
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	2 cut(s)	139, 869
AcsI	RAATTY	1 cut(s)	736
AfaI	GTAC	9 cut(s)	517, 749, 816, 898, 1049, 1058, 1103, 1116, 1155
AfiI	CCNNNNNNNGG	4 cut(s)	240, 411, 860, 911
AflII	CTTAAG	1 cut(s)	883
AgsI	TTSAA	3 cut(s)	175, 455, 754
AhlI	ACTAGT	2 cut(s)	512, 817
AjnI	CCWGG	2 cut(s)	201, 856
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	9 cut(s)	182, 295, 320, 335, 458, 566, 641, 926, 1024
AluI	AGCT	9 cut(s)	182, 295, 320, 335, 458, 566, 641, 926, 1024
Alw21I	GWGCWC	2 cut(s)	652, 1026
Alw26I	GTCTC	3 cut(s)	410, 648, 765
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	139, 869
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	736
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	727, 1212
AsuHPI	GGTGA	1 cut(s)	419
AsuNHI	GCTAGC	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	727, 1212
BaeI	ACNNNNGTAYC	2 cut(s)	1085, 1118
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	1026
BauI	CACGAG	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	652, 1026
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	3 cut(s)	361, 509, 965
BceAI	ACGGC	1 cut(s)	1148
BciT130I	CCWGG	2 cut(s)	203, 858
BciVI	GTATCC	2 cut(s)	704, 908
BcoDI	GTCTC	3 cut(s)	410, 648, 765
BcuI	ACTAGT	2 cut(s)	512, 817
BfaI	CTAG	5 cut(s)	272, 336, 513, 818, 923
BfmI	CTRYAG	2 cut(s)	825, 908
BfrI	CTTAAG	1 cut(s)	883
BfuI	GTATCC	2 cut(s)	704, 908
BisI	GCNGC	2 cut(s)	34, 333
BlsI	GCNGC	2 cut(s)	35, 334
BmcAI	AGTACT	3 cut(s)	517, 749, 816
Bme1390I	CCNGG	2 cut(s)	203, 858
Bme18I	GGWCC	2 cut(s)	727, 1212
BmgT120I	GGNCC	2 cut(s)	727, 1212
BmiI	GGNNCC	2 cut(s)	598, 729
BmrFI	CCNGG	2 cut(s)	203, 858
BmsI	GCATC	3 cut(s)	61, 630, 775
BmtI	GCTAGC	1 cut(s)	339
BpmI	CTGGAG	2 cut(s)	629, 840
BsaAI	YACGTR	2 cut(s)	1056, 1105
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 411, 860, 911
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	74
Bse3DI	GCAATG	4 cut(s)	43, 123, 225, 474
BseBI	CCWGG	2 cut(s)	203, 858
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	10, 621
BseLI	CCNNNNNNNGG	4 cut(s)	240, 411, 860, 911
BseMI	GCAATG	4 cut(s)	43, 123, 225, 474
BseMII	CTCAG	2 cut(s)	158, 891
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	344
BseYI	CCCAGC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	141, 871
BsiHKAI	GWGCWC	2 cut(s)	652, 1026
BsiSI	CCGG	2 cut(s)	600, 872
BsiWI	CGTACG	1 cut(s)	1101
BslI	CCNNNNNNNGG	4 cut(s)	240, 411, 860, 911
BsmAI	GTCTC	3 cut(s)	410, 648, 765
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	141, 871
Bsp1286I	GDGCHC	2 cut(s)	652, 1026
Bsp143I	GATC	5 cut(s)	277, 571, 582, 604, 612
BspACI	CCGC	4 cut(s)	33, 234, 555, 1015
BspANI	GGCC	2 cut(s)	141, 871
BspCNI	CTCAG	2 cut(s)	159, 892
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	598, 729
BspOI	GCTAGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	883
BsrBI	CCGCTC	1 cut(s)	555
BsrDI	GCAATG	4 cut(s)	43, 123, 225, 474
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	5 cut(s)	277, 571, 582, 604, 612
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	203, 858
Bst4CI	ACNGT	4 cut(s)	421, 542, 685, 1098
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	883
BstAPI	GCANNNNNTGC	2 cut(s)	58, 718
BstBAI	YACGTR	2 cut(s)	1056, 1105
BstC8I	GCNNGC	6 cut(s)	99, 139, 180, 337, 601, 710
BstDEI	CTNAG	2 cut(s)	167, 900
BstF5I	GGATG	2 cut(s)	10, 621
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	5 cut(s)	280, 574, 585, 607, 615
BstMAI	GTCTC	3 cut(s)	410, 648, 765
BstMBI	GATC	5 cut(s)	277, 571, 582, 604, 612
BstNI	CCWGG	2 cut(s)	203, 858
BstSCI	CCNGG	2 cut(s)	201, 856
BstSFI	CTRYAG	2 cut(s)	825, 908
BstSNI	TACGTA	2 cut(s)	1056, 1105
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	344
BsuI	GTATCC	2 cut(s)	704, 908
BsuRI	GGCC	2 cut(s)	141, 871
BtgZI	GCGATG	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	10, 621
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	6 cut(s)	99, 139, 180, 337, 601, 710
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	727, 1212
CseI	GACGC	2 cut(s)	219, 379
Csp6I	GTAC	9 cut(s)	516, 748, 815, 897, 1048, 1057, 1102, 1115, 1154
CviAII	CATG	2 cut(s)	143, 220
CviQI	GTAC	9 cut(s)	516, 748, 815, 897, 1048, 1057, 1102, 1115, 1154
DdeI	CTNAG	2 cut(s)	167, 900
DpnI	GATC	5 cut(s)	279, 573, 584, 606, 614
DpnII	GATC	5 cut(s)	277, 571, 582, 604, 612
EaeI	YGGCCR	2 cut(s)	139, 869
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	1024
Eco105I	TACGTA	2 cut(s)	1056, 1105
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	1026
Eco47I	GGWCC	2 cut(s)	727, 1212
Eco53kI	GAGCTC	1 cut(s)	1024
EcoICRI	GAGCTC	1 cut(s)	1024
EcoRII	CCWGG	2 cut(s)	201, 856
EcoT14I	CCWWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	1069
EcoT38I	GRGCYC	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	146, 223
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	2 cut(s)	142, 219
Fnu4HI	GCNGC	2 cut(s)	34, 333
FokI	GGATG	2 cut(s)	17, 608
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	2 cut(s)	34, 333
FspBI	CTAG	5 cut(s)	272, 336, 513, 818, 923
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	2 cut(s)	34, 333
GsaI	CCCAGC	1 cut(s)	295
GsuI	CTGGAG	2 cut(s)	629, 840
HaeIII	GGCC	2 cut(s)	141, 871
HapII	CCGG	2 cut(s)	600, 872
HgaI	GACGC	2 cut(s)	219, 379
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	146, 223
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	70, 285, 773
HpaII	CCGG	2 cut(s)	600, 872
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	6 cut(s)	494, 538, 547, 664, 949, 1212
Hpy188I	TCNGA	4 cut(s)	168, 385, 761, 1040
Hpy188III	TCNNGA	7 cut(s)	27, 105, 569, 608, 636, 779, 1085
Hpy8I	GTNNAC	6 cut(s)	494, 538, 547, 664, 949, 1212
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	635, 756, 1225
HpyCH4III	ACNGT	4 cut(s)	421, 542, 685, 1098
HpyCH4IV	ACGT	3 cut(s)	534, 1055, 1104
HpyCH4V	TGCA	8 cut(s)	52, 223, 257, 332, 721, 788, 845, 1067
HpyF3I	CTNAG	2 cut(s)	167, 900
HpySE526I	ACGT	3 cut(s)	534, 1055, 1104
Hsp92II	CATG	2 cut(s)	146, 223
HspAI	GCGC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Kzo9I	GATC	5 cut(s)	277, 571, 582, 604, 612
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	5 cut(s)	596, 638, 941, 1021, 1029
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	3 cut(s)	61, 630, 775
MaeI	CTAG	5 cut(s)	272, 336, 513, 818, 923
MaeII	ACGT	3 cut(s)	534, 1055, 1104
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	5 cut(s)	279, 573, 584, 606, 614
MbiI	CCGCTC	1 cut(s)	555
MboI	GATC	5 cut(s)	277, 571, 582, 604, 612
MboII	GAAGA	4 cut(s)	314, 407, 577, 925
MhlI	GDGCHC	2 cut(s)	652, 1026
MlsI	TGGCCA	1 cut(s)	141
MluCI	AATT	2 cut(s)	736, 1003
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	2 cut(s)	279, 767
MmeI	TCCRAC	2 cut(s)	67, 999
MnlI	CCTC	9 cut(s)	13, 154, 162, 335, 339, 864, 1004, 1034, 1203
Mox20I	TGGCCA	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	1069
MroNI	GCCGGC	1 cut(s)	599
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	5 cut(s)	297, 360, 438, 689, 884
Msp20I	TGGCCA	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	883
MspI	CCGG	2 cut(s)	600, 872
MspR9I	CCNGG	2 cut(s)	203, 858
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	2 cut(s)	203, 858
MvnI	CGCG	1 cut(s)	95
NaeI	GCCGGC	1 cut(s)	601
NdeII	GATC	5 cut(s)	277, 571, 582, 604, 612
NgoMIV	GCCGGC	1 cut(s)	599
NheI	GCTAGC	1 cut(s)	335
NlaIII	CATG	2 cut(s)	146, 223
NlaIV	GGNNCC	2 cut(s)	598, 729
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	1069
PciSI	GCTCTTC	1 cut(s)	327
PctI	GAATGC	1 cut(s)	392
PdiI	GCCGGC	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	70
Pfl23II	CGTACG	1 cut(s)	1101
PflFI	GACNNNGTC	1 cut(s)	659
PkrI	GCNGC	2 cut(s)	35, 334
PleI	GAGTC	2 cut(s)	279, 767
PpsI	GAGTC	2 cut(s)	279, 767
Ppu21I	YACGTR	2 cut(s)	1056, 1105
Psp124BI	GAGCTC	1 cut(s)	1026
Psp6I	CCWGG	2 cut(s)	201, 856
PspFI	CCCAGC	1 cut(s)	291
PspGI	CCWGG	2 cut(s)	201, 856
PspLI	CGTACG	1 cut(s)	1101
PspN4I	GGNNCC	2 cut(s)	598, 729
PspPI	GGNCC	2 cut(s)	727, 1212
PsrI	GAACNNNNNNTAC	4 cut(s)	147, 179, 740, 772
PstNI	CAGNNNCTG	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	9 cut(s)	517, 749, 816, 898, 1049, 1058, 1103, 1116, 1155
RsaNI	GTAC	9 cut(s)	516, 748, 815, 897, 1048, 1057, 1102, 1115, 1154
SacI	GAGCTC	1 cut(s)	1026
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	5 cut(s)	297, 360, 438, 689, 884
SatI	GCNGC	2 cut(s)	34, 333
Sau3AI	GATC	5 cut(s)	277, 571, 582, 604, 612
Sau96I	GGNCC	2 cut(s)	727, 1212
ScaI	AGTACT	3 cut(s)	517, 749, 816
SchI	GAGTC	2 cut(s)	279, 767
ScrFI	CCNGG	2 cut(s)	203, 858
SduI	GDGCHC	2 cut(s)	652, 1026
SfaNI	GCATC	3 cut(s)	61, 630, 775
SfcI	CTRYAG	2 cut(s)	825, 908
SinI	GGWCC	2 cut(s)	727, 1212
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
SnaBI	TACGTA	2 cut(s)	1056, 1105
SpeI	ACTAGT	2 cut(s)	512, 817
Sse9I	AATT	2 cut(s)	736, 1003
SsiI	CCGC	4 cut(s)	33, 234, 555, 1015
SspMI	CTAG	5 cut(s)	272, 336, 513, 818, 923
SstI	GAGCTC	1 cut(s)	1026
StyD4I	CCNGG	2 cut(s)	201, 856
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	4 cut(s)	421, 542, 685, 1098
TaiI	ACGT	3 cut(s)	537, 1058, 1107
TaqI	TCGA	4 cut(s)	28, 393, 615, 744
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	2 cut(s)	736, 1003
TatI	WGTACW	4 cut(s)	515, 747, 814, 1114
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	5 cut(s)	297, 360, 438, 689, 884
Tru9I	TTAA	5 cut(s)	297, 360, 438, 689, 884
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	4 cut(s)	21, 314, 852, 925
TspGWI	ACGGA	2 cut(s)	522, 740
TspRI	CASTG	1 cut(s)	547
Tth111I	GACNNNGTC	1 cut(s)	659
Vha464I	CTTAAG	1 cut(s)	883
VpaK11BI	GGWCC	2 cut(s)	727, 1212
XapI	RAATTY	1 cut(s)	736
XcmI	CCANNNNNNNNNTGG	2 cut(s)	244, 864
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	5 cut(s)	272, 336, 513, 818, 923
ZrmI	AGTACT	3 cut(s)	517, 749, 816
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.