Rh1DG381000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003301
Physical Location & Seq
Forward (+)
60258989 .. 60259516
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG381000.1

Sequence Viewer

Length: 528 bp
ATGGACCCAAAAAATTTGGTGGAGTACTTCAAGTTCAAAAGGGGCAGAGACTCTCCTGATGACGCACGAACCGCTCTGTTAGTCGTGGCAGTACTGGTGGCTACGGCAACCTATGACACTGCAATAAACCCTCCAGGTGGTCTTTGGCAGGACACAAACTTAAGCAAGAATGGGACTGATCCACCACACCTTGTCGGGACAGCGAATATCGCCTCTTATAACACAGCTTACTACGTCGTTGGGGCGGTTTTGAACTCCATAGGGTTTTCAGTTTCTCTTCACATGATCAATATCCTCACAACCAATTTCCCTTTGCGGTTGGAGCTTCAAGTTTGTGGTGTTGCAATGTACTTTACGTACGTCACTGCATTGATTACTATATCTCCAGGTTTGACCTCAGGGTGGTACACATTGTTTGTACTTGTGCCATTTCTGCCTATGGTGGTACTACTTGCCGTGAGGTTTATCATCAAGCTTACAGAACCTCTGCGAAATCGACTGCAGACCTGCGGATTTGTACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

175

Amino Acids

19.25

Weight (kDa)

8.58

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 20 - 126 1.4e-14 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 515
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 4 cut(s) 72, 245, 316, 510
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 8 cut(s) 26, 93, 350, 359, 407, 420, 447, 519
AfiI CCNNNNNNNGG 2 cut(s) 137, 402
AflII CTTAAG 1 cut(s) 160
AgsI TTSAA 4 cut(s) 31, 37, 253, 329
AjnI CCWGG 2 cut(s) 133, 385
AluBI AGCT 3 cut(s) 227, 325, 475
AluI AGCT 3 cut(s) 227, 325, 475
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 397
BceAI ACGGC 2 cut(s) 120, 440
BciT130I CCWGG 2 cut(s) 135, 387
BclI TGATCA 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 500
BfrI CTTAAG 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 515
BmcAI AGTACT 2 cut(s) 26, 93
Bme1390I CCNGG 2 cut(s) 135, 387
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 135, 387
BpmI CTGGAG 2 cut(s) 117, 369
BsaAI YACGTR 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 402
Bse1I ACTGG 1 cut(s) 99
Bse21I CCTNAGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 290
BseBI CCWGG 2 cut(s) 135, 387
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 2 cut(s) 137, 402
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 99
BsiWI CGTACG 1 cut(s) 357
BslFI GGGAC 2 cut(s) 187, 211
BslI CCNNNNNNNGG 2 cut(s) 137, 402
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 187, 211
Bsp143I GATC 2 cut(s) 178, 285
BspACI CCGC 4 cut(s) 72, 245, 316, 510
BspCNI CTCAG 1 cut(s) 410
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 504
BspMI ACCTGC 1 cut(s) 515
BspPI GGATC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 160
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 99
BssMI GATC 2 cut(s) 178, 285
Bst2UI CCWGG 2 cut(s) 135, 387
Bst6I CTCTTC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 160
BstBAI YACGTR 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 397
BstKTI GATC 2 cut(s) 181, 288
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 178, 285
BstMWI GCNNNNNNNGC 4 cut(s) 71, 209, 322, 433
BstNI CCWGG 2 cut(s) 135, 387
BstSCI CCNGG 2 cut(s) 133, 385
BstSFI CTRYAG 1 cut(s) 500
BstSNI TACGTA 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 397
BtsI GCAGTG 2 cut(s) 117, 363
BtsIMutI CAGTG 2 cut(s) 117, 363
BveI ACCTGC 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 71
Csp6I GTAC 8 cut(s) 25, 92, 349, 358, 406, 419, 446, 518
CviAII CATG 1 cut(s) 283
CviJI RGCY 4 cut(s) 101, 227, 325, 475
CviKI_1 RGCY 4 cut(s) 101, 227, 325, 475
CviQI GTAC 8 cut(s) 25, 92, 349, 358, 406, 419, 446, 518
DdeI CTNAG 1 cut(s) 397
DpnI GATC 2 cut(s) 180, 287
DpnII GATC 2 cut(s) 178, 285
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco105I TACGTA 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 4
Eco81I CCTNAGG 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 133, 385
FaeI CATG 1 cut(s) 286
FaiI YATR 6 cut(s) 114, 219, 260, 284, 380, 440
FaqI GGGAC 2 cut(s) 187, 211
FatI CATG 1 cut(s) 282
FbaI TGATCA 1 cut(s) 285
GsuI CTGGAG 2 cut(s) 117, 369
HgaI GACGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 408
Hpy188III TCNNGA 2 cut(s) 56, 196
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 1 cut(s) 239
HpyCH4IV ACGT 3 cut(s) 234, 356, 360
HpyCH4V TGCA 4 cut(s) 122, 344, 368, 502
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 209, 322, 433
HpyF3I CTNAG 1 cut(s) 397
HpySE526I ACGT 3 cut(s) 234, 356, 360
Hsp92II CATG 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 2 cut(s) 178, 285
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 9 cut(s) 69, 80, 120, 134, 147, 372, 384, 399, 520
MaeII ACGT 3 cut(s) 234, 356, 360
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 180, 287
MbiI CCGCTC 1 cut(s) 74
MboI GATC 2 cut(s) 178, 285
MboII GAAGA 1 cut(s) 269
MluCI AATT 3 cut(s) 13, 304, 523
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 6 cut(s) 141, 223, 305, 406, 453, 495
MseI TTAA 2 cut(s) 161, 526
MspCI CTTAAG 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 135, 387
MvaI CCWGG 2 cut(s) 135, 387
MwoI GCNNNNNNNGC 4 cut(s) 71, 209, 322, 433
NdeII GATC 2 cut(s) 178, 285
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 361
Pfl23II CGTACG 1 cut(s) 357
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 357
PsiI TTATAA 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 133, 385
PspGI CCWGG 2 cut(s) 133, 385
PspLI CGTACG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PstI CTGCAG 1 cut(s) 504
RsaI GTAC 8 cut(s) 26, 93, 350, 359, 407, 420, 447, 519
RsaNI GTAC 8 cut(s) 25, 92, 349, 358, 406, 419, 446, 518
SaqAI TTAA 2 cut(s) 161, 526
Sau3AI GATC 2 cut(s) 178, 285
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 2 cut(s) 26, 93
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 135, 387
SfcI CTRYAG 1 cut(s) 500
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SnaBI TACGTA 1 cut(s) 357
Sse9I AATT 3 cut(s) 13, 304, 523
SsiI CCGC 4 cut(s) 72, 245, 316, 510
StyD4I CCNGG 2 cut(s) 133, 385
TaiI ACGT 3 cut(s) 237, 359, 363
TaqI TCGA 1 cut(s) 496
TasI AATT 3 cut(s) 13, 304, 523
TatI WGTACW 5 cut(s) 24, 91, 348, 418, 517
Tru1I TTAA 2 cut(s) 161, 526
Tru9I TTAA 2 cut(s) 161, 526
TscAI CASTG 2 cut(s) 124, 370
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspRI CASTG 2 cut(s) 124, 370
Vha464I CTTAAG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 13
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
ZrmI AGTACT 2 cut(s) 26, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.