Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003301

Physical Location & Seq

Genomic Coordinates Reverse (-)

6250098 .. 6252845

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G057700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGCTATGTTGTGTTGGAGCTCAGGAAGGGGCTTCACTTCCTAATGTTGGCTTCACACACTACTTAAGAAAGGATCAGAGGCTGATGAAGGCTGCTCAAGAGGGAGATATTGATGGCTTCTATTCGTTGATACAGGAGGATTCGTGTATTTTAGAGCGCATTGATCAGGTTCCATTTGTTCATACTCCTTTGCACGTAGCTGCATCTGCAGGGCATACCCACTTTGCCCTGGAGATGATGAGATTAAAGCCACAATTTACAAGGAAGCAAAACAAAGAAGGGTTCTCTGCATTGCACTTGGCTTTGAAACATGGGAAAACACAGACAGTGCTTTCTGTCTTGTCCGCCTATAGAGACATTGTCCGAGTCAAAGGAAGGGAGGGTAGGACTCTCTTGCACTGTGTAGCTGAAATCGGAAACTTGGATCTTCTGGCTGAATTTCTAGCAGCTTGCCCAGAATCTATCATTGATCTGACAAATCAGAAAGAAACTGCACTGCATATTGCTGCAAAGAATGACAAGGCCGGAGCACTCGAAGTCTTGCTGGGATGGATTCAGCATGTTGATATGGATGAGGTCTTGCAGTGGACTGATGTTGAAGGCAACACTGTATTGCACATTGCAACAGCAAGAAATCAATTCCAGGTGATGAGGTTGTTAATAAAAAGGGTTGACCTAAATGCCAAGAATTTGGAGGGTTTAACAGCTCTGGACATCTCATTGCAAGGACCAGATAACAACACAGAGATGATAAATTTATTATGCCGAAATGGAGCTTTGGGAGCTTCCTCACTTCGTAGAGTATCTTCTCTTGCAGACTCTTTGAGGAAAGAGATGTCACTGACCGAAAAATGGATACTACGAAGTTACCTCGCAAAATGTTGCATGCCAAATGAAAAGCGCAACGCTCTACTAGTGATAGCTGTGCTGATTGCAACAGCCACATTCCAAGCTGTGCTCAATCCCCCTGCTGGTATCGAGAAAGGTTACTCTGAAACTCCTCATAATTTTAAAAGGAACTCCGCAGCCACGACCAGTAGCGCTGAAGAAAATGCAGTATCAAACTTTGCATTTCACTCCGCTGCAGCATGCGTTTCTTTCTTGGCTTTTAACACCATGGCCTTTTTGACATCTATTTCTGAGATATGGTTTCACCTCCCACAAGGCCTTTATTTCTTGATAAAACTGGGTTTACCTCTATTGTTATGCTATATGCTTTCGTTGAGTCTCACAGCACCAGTATCAAGTGTGACACCGTTTTACGTGGTTCTGTTATTTTTATCTCAAGTGAAAGCAATAGTTAGGGTCATGTTTTTTAAGAGGACATTGGAACTAAAGCTCTCCCTGTTGAAACATTGTCCCAGTTTACATAGAGAAATGGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

463

Amino Acids

51.26

Weight (kDa)

8.23

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14480 AT1G14480 AT1G14500 AT4G10720 AT4G10720 AT5G15500 AT5G15500 AT5G54610 AT5G54620
fragaria_vesca	FvH4_7g26700
malus_domestica	MD04G1235200.v1.1
prunus_persica	Prupe.5G057700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0373291 RchiOBHm_Chr7g0205421
rosa_laevigata	RLG00000003382 RLG00000026829
rosa_multiflora	Rmu_sc0000170.1_g000001 Rmu_sc0006687.1_g000001 Rmu_sc0021015.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252390 Rroxscaffold_4G00284290
rosa_rugosa	Rorug01G0376900 Rorug07G0091300
rosa_samantha	Rh1AG385800 Rh1AG386000 Rh1BG350000 Rh1DG380800 Rh1DG381000 Rh7AG221300 Rh7BG217400 Rh7CG234200 Rh7CG234300 Rh7DG228100
rosa_wichuraiana	Rw1G034910 Rw7G019110 Rw7G019120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	345, 1023, 1080
AclWI	GGATC	2 cut(s)	81, 432
AcsI	RAATTY	3 cut(s)	437, 688, 754
AcuI	CTGAAG	1 cut(s)	1065
AfeI	AGCGCT	1 cut(s)	1042
AfiI	CCNNNNNNNGG	3 cut(s)	47, 852, 971
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	307, 599, 1351
AhlI	ACTAGT	1 cut(s)	913
AjnI	CCWGG	2 cut(s)	228, 642
Alw21I	GWGCWC	3 cut(s)	22, 532, 960
Alw26I	GTCTC	2 cut(s)	348, 1232
AlwI	GGATC	2 cut(s)	81, 432
AlwNI	CAGNNNCTG	1 cut(s)	82
Aor51HI	AGCGCT	1 cut(s)	1042
AoxI	GGCC	3 cut(s)	522, 1119, 1165
ApeKI	GCWGC	7 cut(s)	92, 200, 446, 506, 1025, 1082, 1085
ApoI	RAATTY	3 cut(s)	437, 688, 754
AspLEI	GCGC	3 cut(s)	159, 903, 1043
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	2 cut(s)	658, 1145
AvaII	GGWCC	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	22
BarI	GAAGNNNNNNTAC	2 cut(s)	790, 822
Bbv12I	GWGCWC	3 cut(s)	22, 532, 960
BbvI	GCAGC	7 cut(s)	79, 187, 458, 493, 1037, 1069, 1097
BccI	CCATC	2 cut(s)	107, 543
BciT130I	CCWGG	2 cut(s)	230, 644
BciVI	GTATCC	1 cut(s)	849
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	348, 1232
BcuI	ACTAGT	1 cut(s)	913
BfaI	CTAG	2 cut(s)	443, 914
BfmI	CTRYAG	3 cut(s)	207, 349, 1083
BfoI	RGCGCY	1 cut(s)	1044
BfrI	CTTAAG	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	7 cut(s)	93, 201, 447, 507, 1026, 1083, 1086
BlsI	GCNGC	7 cut(s)	94, 202, 448, 508, 1027, 1084, 1087
Bme1390I	CCNGG	2 cut(s)	230, 644
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	2 cut(s)	230, 644
BmrI	ACTGGG	2 cut(s)	1196, 1356
BmsI	GCATC	1 cut(s)	212
BmuI	ACTGGG	2 cut(s)	1196, 1356
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	81, 1269
BsaAI	YACGTR	2 cut(s)	196, 1264
BsaJI	CCNNGG	2 cut(s)	228, 1116
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 852, 971
Bse1I	ACTGG	4 cut(s)	1035, 1191, 1238, 1362
Bse3DI	GCAATG	3 cut(s)	290, 618, 719
BseBI	CCWGG	2 cut(s)	230, 644
BseDI	CCNNGG	2 cut(s)	228, 1116
BseGI	GGATG	2 cut(s)	554, 577
BseLI	CCNNNNNNNGG	3 cut(s)	47, 852, 971
BseMI	GCAATG	3 cut(s)	290, 618, 719
BseMII	CTCAG	2 cut(s)	35, 1131
BseNI	ACTGG	4 cut(s)	1035, 1191, 1238, 1362
BseRI	GAGGAG	1 cut(s)	990
BseXI	GCAGC	7 cut(s)	79, 187, 458, 493, 1037, 1069, 1097
BseYI	CCCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	524, 1121, 1167
BsiHKAI	GWGCWC	3 cut(s)	22, 532, 960
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	1344
BslI	CCNNNNNNNGG	3 cut(s)	47, 852, 971
BsmAI	GTCTC	2 cut(s)	348, 1232
BsmFI	GGGAC	1 cut(s)	1344
BsnI	GGCC	3 cut(s)	524, 1121, 1167
Bsp1286I	GDGCHC	3 cut(s)	22, 532, 960
Bsp143I	GATC	4 cut(s)	73, 163, 424, 469
Bsp19I	CCATGG	1 cut(s)	1116
BspACI	CCGC	3 cut(s)	345, 1023, 1080
BspANI	GGCC	3 cut(s)	524, 1121, 1167
BspCNI	CTCAG	2 cut(s)	34, 1132
BspHI	TCATGA	1 cut(s)	1385
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	2 cut(s)	211, 1087
BspPI	GGATC	2 cut(s)	81, 432
BspTI	CTTAAG	1 cut(s)	64
BsrDI	GCAATG	3 cut(s)	290, 618, 719
BsrI	ACTGG	4 cut(s)	1035, 1191, 1238, 1362
BssECI	CCNNGG	2 cut(s)	228, 1116
BssMI	GATC	4 cut(s)	73, 163, 424, 469
BssT1I	CCWWGG	1 cut(s)	1116
Bst2UI	CCWGG	2 cut(s)	230, 644
Bst4CI	ACNGT	4 cut(s)	328, 401, 610, 1257
BstAFI	CTTAAG	1 cut(s)	64
BstBAI	YACGTR	2 cut(s)	196, 1264
BstC8I	GCNNGC	3 cut(s)	451, 887, 1090
BstDEI	CTNAG	2 cut(s)	21, 1140
BstDSI	CCRYGG	1 cut(s)	1116
BstF5I	GGATG	2 cut(s)	554, 577
BstH2I	RGCGCY	1 cut(s)	1044
BstHHI	GCGC	3 cut(s)	159, 903, 1043
BstKTI	GATC	4 cut(s)	76, 166, 427, 472
BstMAI	GTCTC	2 cut(s)	348, 1232
BstMBI	GATC	4 cut(s)	73, 163, 424, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 782
BstNI	CCWGG	2 cut(s)	230, 644
BstNSI	RCATGY	3 cut(s)	563, 889, 1092
BstSCI	CCNGG	2 cut(s)	228, 642
BstSFI	CTRYAG	3 cut(s)	207, 349, 1083
BstV1I	GCAGC	7 cut(s)	79, 187, 458, 493, 1037, 1069, 1097
BstX2I	RGATCY	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	424
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	3 cut(s)	524, 1121, 1167
BtgI	CCRYGG	1 cut(s)	1116
BtsCI	GGATG	2 cut(s)	554, 577
BtsI	GCAGTG	2 cut(s)	494, 590
BtsIMutI	CAGTG	6 cut(s)	333, 397, 494, 590, 606, 839
Cac8I	GCNNGC	3 cut(s)	451, 887, 1090
CaiI	CAGNNNCTG	1 cut(s)	82
CciI	TCATGA	1 cut(s)	1385
CfoI	GCGC	3 cut(s)	159, 903, 1043
Cfr13I	GGNCC	1 cut(s)	728
CviAII	CATG	7 cut(s)	311, 560, 886, 1089, 1117, 1309, 1386
DdeI	CTNAG	2 cut(s)	21, 1140
DpnI	GATC	4 cut(s)	75, 165, 426, 471
DpnII	GATC	4 cut(s)	73, 163, 424, 469
DraI	TTTAAA	1 cut(s)	1012
EciI	GGCGGA	1 cut(s)	334
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	1116
Eco147I	AGGCCT	1 cut(s)	1167
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	728
Eco47III	AGCGCT	1 cut(s)	1042
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	1065
EcoICRI	GAGCTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	228, 642
EcoT14I	CCWWGG	1 cut(s)	1116
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	1116
FaeI	CATG	7 cut(s)	314, 563, 889, 1092, 1120, 1312, 1389
FaqI	GGGAC	1 cut(s)	1344
FatI	CATG	7 cut(s)	310, 559, 885, 1088, 1116, 1308, 1385
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	7 cut(s)	93, 201, 447, 507, 1026, 1083, 1086
FokI	GGATG	2 cut(s)	561, 584
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	7 cut(s)	93, 201, 447, 507, 1026, 1083, 1086
FspBI	CTAG	2 cut(s)	443, 914
GlaI	GCGC	3 cut(s)	158, 902, 1042
GluI	GCNGC	7 cut(s)	93, 201, 447, 507, 1026, 1083, 1086
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	1044
HaeIII	GGCC	3 cut(s)	524, 1121, 1167
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	3 cut(s)	159, 903, 1043
Hin1II	CATG	7 cut(s)	314, 563, 889, 1092, 1120, 1312, 1389
Hin6I	GCGC	3 cut(s)	157, 901, 1041
HinP1I	GCGC	3 cut(s)	157, 901, 1041
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	8 cut(s)	140, 366, 388, 458, 553, 818, 1225, 1382
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	658, 1145
Hpy166II	GTNNAC	4 cut(s)	588, 673, 1193, 1367
Hpy188I	TCNGA	7 cut(s)	78, 365, 416, 474, 483, 994, 1141
Hpy188III	TCNNGA	6 cut(s)	23, 98, 710, 979, 1177, 1386
Hpy8I	GTNNAC	4 cut(s)	588, 673, 1193, 1367
HpyAV	CCTTC	5 cut(s)	20, 82, 272, 369, 593
HpyCH4III	ACNGT	4 cut(s)	328, 401, 610, 1257
HpyCH4IV	ACGT	2 cut(s)	195, 1263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 782
HpyF3I	CTNAG	2 cut(s)	21, 1140
HpySE526I	ACGT	2 cut(s)	195, 1263
Hsp92II	CATG	7 cut(s)	314, 563, 889, 1092, 1120, 1312, 1389
HspAI	GCGC	3 cut(s)	157, 901, 1041
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	73, 163, 424, 469
LmnI	GCTCC	4 cut(s)	17, 527, 773, 782
Lsp1109I	GCAGC	7 cut(s)	79, 187, 458, 493, 1037, 1069, 1097
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	443, 914
MaeII	ACGT	2 cut(s)	195, 1263
MaeIII	GTNAC	4 cut(s)	837, 866, 986, 1249
MalI	GATC	4 cut(s)	75, 165, 426, 471
MboI	GATC	4 cut(s)	73, 163, 424, 469
MboII	GAAGA	3 cut(s)	419, 798, 1058
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	3 cut(s)	22, 532, 960
MluCI	AATT	6 cut(s)	254, 437, 638, 688, 754, 1006
MlyI	GAGTC	4 cut(s)	375, 382, 812, 1234
MseI	TTAA	7 cut(s)	65, 245, 659, 701, 1011, 1110, 1317
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	1082
MspCI	CTTAAG	1 cut(s)	64
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	2 cut(s)	230, 644
MvaI	CCWGG	2 cut(s)	230, 644
MwoI	GCNNNNNNNGC	2 cut(s)	206, 782
NcoI	CCATGG	1 cut(s)	1116
NdeII	GATC	4 cut(s)	73, 163, 424, 469
NlaIII	CATG	7 cut(s)	314, 563, 889, 1092, 1120, 1312, 1389
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	837, 1249
NspI	RCATGY	3 cut(s)	563, 889, 1092
PaeI	GCATGC	2 cut(s)	889, 1092
PagI	TCATGA	1 cut(s)	1385
PceI	AGGCCT	1 cut(s)	1167
PfeI	GAWTC	4 cut(s)	140, 458, 553, 1382
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	7 cut(s)	94, 202, 448, 508, 1027, 1084, 1087
PleI	GAGTC	4 cut(s)	374, 382, 812, 1233
PpsI	GAGTC	4 cut(s)	374, 382, 812, 1233
Ppu21I	YACGTR	2 cut(s)	196, 1264
Psp124BI	GAGCTC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	228, 642
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	228, 642
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	728
PstI	CTGCAG	2 cut(s)	211, 1087
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	22
SaqAI	TTAA	7 cut(s)	65, 245, 659, 701, 1011, 1110, 1317
SatI	GCNGC	7 cut(s)	93, 201, 447, 507, 1026, 1083, 1086
Sau3AI	GATC	4 cut(s)	73, 163, 424, 469
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	4 cut(s)	375, 382, 812, 1234
ScrFI	CCNGG	2 cut(s)	230, 644
SduI	GDGCHC	3 cut(s)	22, 532, 960
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	3 cut(s)	207, 349, 1083
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	3 cut(s)	64, 96, 1284
SmoI	CTYRAG	3 cut(s)	64, 96, 1284
SpeI	ACTAGT	1 cut(s)	913
SphI	GCATGC	2 cut(s)	889, 1092
Sse9I	AATT	6 cut(s)	254, 437, 638, 688, 754, 1006
SseBI	AGGCCT	1 cut(s)	1167
SsiI	CCGC	3 cut(s)	345, 1023, 1080
SspMI	CTAG	2 cut(s)	443, 914
SstI	GAGCTC	1 cut(s)	22
StuI	AGGCCT	1 cut(s)	1167
StyD4I	CCNGG	2 cut(s)	228, 642
StyI	CCWWGG	1 cut(s)	1116
TaaI	ACNGT	4 cut(s)	328, 401, 610, 1257
TaiI	ACGT	2 cut(s)	198, 1266
TaqI	TCGA	2 cut(s)	534, 978
TaqII	GACCGA	1 cut(s)	860
TasI	AATT	6 cut(s)	254, 437, 638, 688, 754, 1006
TfiI	GAWTC	4 cut(s)	140, 458, 553, 1382
Tru1I	TTAA	7 cut(s)	65, 245, 659, 701, 1011, 1110, 1317
Tru9I	TTAA	7 cut(s)	65, 245, 659, 701, 1011, 1110, 1317
TscAI	CASTG	6 cut(s)	333, 404, 501, 590, 613, 846
TseFI	GTSAC	2 cut(s)	837, 1249
TseI	GCWGC	7 cut(s)	92, 200, 446, 506, 1025, 1082, 1085
Tsp45I	GTSAC	2 cut(s)	837, 1249
TspDTI	ATGAA	3 cut(s)	101, 170, 909
TspRI	CASTG	6 cut(s)	333, 404, 501, 590, 613, 846
Tth111I	GACNNNGTC	1 cut(s)	359
Vha464I	CTTAAG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	3 cut(s)	437, 688, 754
XceI	RCATGY	3 cut(s)	563, 889, 1092
XspI	CTAG	2 cut(s)	443, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.