Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

7301769 .. 7302994

Gene Structure 1226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAACACCGTTAAGGGAAGTGAGACCAAAGGTGACACTTGTGGTACGAATGGTAGCTTCAGTGGGTAACTACGATTACATCATTGATTATGAGTTCCAAACTGATGGGGTTATGAGAGCAAAGGTTGGGCTTAGTGGAATGTTGATGGTGAAAGGGACAACGTACGAGAACAAGAACCAAGTGAAGAAAGACAAAGAAGGTAATGAAGAAGAGCTTTATGGCACGATTCTGTCCGAAAATGTAATTGGAGTTATTCACGACCACTACGTCACTTTTTACCTTGACCTCGATGTCGATGGCCCGGACAATTCCTTTGTTAAAGTGAACCTCAAGAGGCAAGAGACGGCGCCAGGTGAGTCACCTAGGAAAAGTTACATGAAAGCAGTTAGGAACATTGTGAAAACCGAAAAAGACGGTCAGATCAAGCTTAGCTTGTACGATCCATCAGAATACCACGTCATTAATCCTGGTAAAACAACTCGAGTTGGTAACCCGACGGGTTACAAGGTTGTCCCTAGAGCCACAGCAGCTAGTCTACTTGACCATGATGATCCACCGCAGAAGAGAGGAGCTTTTACTAATAACCAAATTTGGGTTACTCCCTACAATAAGTCCGAGCAATGGGCTAGTGGTTTATTCACTTACCAAAGCCATGGTGATGATACTCTTGCGGTTTGGTCCGACAGAGATAGAGATATAGAGAATAAGGACATTGTGGTGTGGTACACGCTTGGGTTCCATCACATTCCATGTCAAGAAGATTTTCCGATAATGCCCACTGTTTCTTCAAGTTTCGATTTGAAGCCCGTAAATTTTTTCGAGCGCAATCCAATCCTTAAGGCCGCTCCAAACTTTGAATATGACCTTCCGGTTTGCGGAGCCAAATCTGATTCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

300

Amino Acids

33.96

Weight (kDa)

5.57

Isoelectric Point (pI)

34.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	6 - 280	7.8e-89	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	269, 293
AccB1I	GGYRCC	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	848
AccI	GTMKAC	1 cut(s)	538
AciI	CCGC	4 cut(s)	560, 674, 846, 879
AclWI	GGATC	2 cut(s)	437, 548
AcsI	RAATTY	2 cut(s)	591, 814
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	4 cut(s)	48, 167, 440, 728
AfiI	CCNNNNNNNGG	3 cut(s)	595, 624, 878
AflII	CTTAAG	1 cut(s)	839
AgsI	TTSAA	3 cut(s)	792, 805, 860
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	352, 469
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	6 cut(s)	59, 217, 430, 435, 533, 575
AluI	AGCT	6 cut(s)	59, 217, 430, 435, 533, 575
Alw26I	GTCTC	2 cut(s)	19, 338
AlwI	GGATC	2 cut(s)	437, 548
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	301, 843
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	2 cut(s)	591, 814
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	765
AspA2I	CCTAGG	1 cut(s)	365
AspLEI	GCGC	2 cut(s)	352, 828
AspS9I	GGNCC	2 cut(s)	302, 681
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	5 cut(s)	46, 163, 354, 368, 671
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	681
AvrII	CCTAGG	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	5 cut(s)	101, 142, 293, 454, 750
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	2 cut(s)	354, 471
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	19, 338
BfaI	CTAG	4 cut(s)	366, 519, 534, 630
BfoI	RGCGCY	1 cut(s)	353
BfrI	CTTAAG	1 cut(s)	839
BisI	GCNGC	2 cut(s)	531, 846
BlnI	CCTAGG	1 cut(s)	365
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	2 cut(s)	532, 847
Bme1390I	CCNGG	3 cut(s)	305, 354, 471
Bme18I	GGWCC	1 cut(s)	681
BmeT110I	CYCGRG	1 cut(s)	483
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	302, 681
BmiI	GGNNCC	3 cut(s)	351, 740, 883
BmrFI	CCNGG	3 cut(s)	305, 354, 471
Bpu1102I	GCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	365, 655
BsaWI	WCCGGW	1 cut(s)	871
Bsc4I	CCNNNNNNNGG	3 cut(s)	595, 624, 878
Bse3DI	GCAATG	1 cut(s)	629
BseBI	CCWGG	2 cut(s)	354, 471
BseDI	CCNNGG	2 cut(s)	365, 655
BseLI	CCNNNNNNNGG	3 cut(s)	595, 624, 878
BseMI	GCAATG	1 cut(s)	629
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	542
BshFI	GGCC	2 cut(s)	303, 845
BshNI	GGYRCC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	305, 872
BsiWI	CGTACG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	172, 500
BslI	CCNNNNNNNGG	3 cut(s)	595, 624, 878
BsmAI	GTCTC	2 cut(s)	19, 338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	172, 500
BsnI	GGCC	2 cut(s)	303, 845
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	483
Bsp143I	GATC	3 cut(s)	423, 442, 553
Bsp1720I	GCTNAGC	1 cut(s)	431
Bsp19I	CCATGG	1 cut(s)	655
BspACI	CCGC	4 cut(s)	560, 674, 846, 879
BspANI	GGCC	2 cut(s)	303, 845
BspLI	GGNNCC	3 cut(s)	351, 740, 883
BspPI	GGATC	2 cut(s)	437, 548
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	19
BsrBI	CCGCTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	365, 655
BssMI	GATC	3 cut(s)	423, 442, 553
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	2 cut(s)	365, 655
Bst2UI	CCWGG	2 cut(s)	354, 471
Bst4CI	ACNGT	3 cut(s)	12, 419, 784
Bst6I	CTCTTC	2 cut(s)	207, 560
BstACI	GRCGYC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	839
BstDEI	CTNAG	2 cut(s)	134, 431
BstDSI	CCRYGG	1 cut(s)	655
BstEII	GGTNACC	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	352, 828
BstKTI	GATC	3 cut(s)	426, 445, 556
BstMAI	GTCTC	2 cut(s)	19, 338
BstMBI	GATC	3 cut(s)	423, 442, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	354, 471
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	3 cut(s)	303, 352, 469
BstV1I	GCAGC	1 cut(s)	542
BstXI	CCANNNNNNTGG	2 cut(s)	107, 656
BsuRI	GGCC	2 cut(s)	303, 845
BtgI	CCRYGG	1 cut(s)	655
BtrI	CACGTC	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	69, 780
CfoI	GCGC	2 cut(s)	352, 828
Cfr13I	GGNCC	2 cut(s)	302, 681
Csp6I	GTAC	4 cut(s)	47, 166, 439, 727
CviAII	CATG	4 cut(s)	379, 548, 656, 753
CviQI	GTAC	4 cut(s)	47, 166, 439, 727
DdeI	CTNAG	2 cut(s)	134, 431
DinI	GGCGCC	1 cut(s)	351
DpnI	GATC	3 cut(s)	425, 444, 555
DpnII	GATC	3 cut(s)	423, 442, 553
DrdI	GACNNNNNNGTC	2 cut(s)	269, 293
DseDI	GACNNNNNNGTC	2 cut(s)	269, 293
Eam1104I	CTCTTC	2 cut(s)	207, 560
EarI	CTCTTC	2 cut(s)	207, 560
Eco130I	CCWWGG	2 cut(s)	365, 655
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	483
Eco91I	GGTNACC	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	352, 469
EcoT14I	CCWWGG	2 cut(s)	365, 655
EgeI	GGCGCC	1 cut(s)	351
EheI	GGCGCC	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	365, 655
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	4 cut(s)	382, 551, 659, 756
FaiI	YATR	9 cut(s)	93, 116, 222, 380, 549, 657, 701, 754, 864
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 419, 451
FaqI	GGGAC	2 cut(s)	172, 500
FatI	CATG	4 cut(s)	378, 547, 655, 752
FblI	GTMKAC	1 cut(s)	538
Fnu4HI	GCNGC	2 cut(s)	531, 846
Fsp4HI	GCNGC	2 cut(s)	531, 846
FspBI	CTAG	4 cut(s)	366, 519, 534, 630
GlaI	GCGC	2 cut(s)	351, 827
GluI	GCNGC	2 cut(s)	531, 846
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	303, 845
HapII	CCGG	2 cut(s)	305, 872
HhaI	GCGC	2 cut(s)	352, 828
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	382, 551, 659, 756
Hin6I	GCGC	2 cut(s)	350, 826
HinP1I	GCGC	2 cut(s)	350, 826
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	3 cut(s)	229, 359, 893
HpaII	CCGG	2 cut(s)	305, 872
HphI	GGTGA	5 cut(s)	46, 163, 354, 368, 671
Hpy166II	GTNNAC	3 cut(s)	328, 539, 729
Hpy188I	TCNGA	7 cut(s)	238, 423, 451, 619, 685, 771, 892
Hpy188III	TCNNGA	3 cut(s)	260, 334, 758
Hpy8I	GTNNAC	3 cut(s)	328, 539, 729
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	2 cut(s)	194, 878
HpyCH4III	ACNGT	3 cut(s)	12, 419, 784
HpyCH4IV	ACGT	3 cut(s)	164, 270, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	2 cut(s)	134, 431
HpySE526I	ACGT	3 cut(s)	164, 270, 459
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	4 cut(s)	382, 551, 659, 756
HspAI	GCGC	2 cut(s)	350, 826
KasI	GGCGCC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	423, 442, 553
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	3 cut(s)	572, 853, 881
LpnPI	CCDG	6 cut(s)	318, 339, 366, 456, 483, 885
Lsp1109I	GCAGC	1 cut(s)	542
MaeI	CTAG	4 cut(s)	366, 519, 534, 630
MaeII	ACGT	3 cut(s)	164, 270, 459
MaeIII	GTNAC	8 cut(s)	34, 68, 271, 360, 374, 491, 503, 598
MalI	GATC	3 cut(s)	425, 444, 555
MbiI	CCGCTC	1 cut(s)	848
MboI	GATC	3 cut(s)	423, 442, 553
MboII	GAAGA	6 cut(s)	199, 221, 224, 577, 773, 780
MluCI	AATT	4 cut(s)	246, 310, 591, 814
Mly113I	GGCGCC	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	4 cut(s)	299, 330, 341, 563
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	4 cut(s)	14, 321, 465, 840
MslI	CAYNNNNRTG	2 cut(s)	660, 719
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	2 cut(s)	305, 872
MspR9I	CCNGG	3 cut(s)	305, 354, 471
MvaI	CCWGG	2 cut(s)	354, 471
MwoI	GCNNNNNNNGC	1 cut(s)	530
NarI	GGCGCC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	3 cut(s)	423, 442, 553
NlaIII	CATG	4 cut(s)	382, 551, 659, 756
NlaIV	GGNNCC	3 cut(s)	351, 740, 883
NmuCI	GTSAC	3 cut(s)	34, 271, 360
PaeR7I	CTCGAG	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	2 cut(s)	229, 893
Pfl23II	CGTACG	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	532, 847
PleI	GAGTC	1 cut(s)	367
PluTI	GGCGCC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	352, 469
PspEI	GGTNACC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	352, 469
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	351, 740, 883
PspPI	GGNCC	2 cut(s)	302, 681
PspXI	VCTCGAGB	1 cut(s)	483
RsaI	GTAC	4 cut(s)	48, 167, 440, 728
RsaNI	GTAC	4 cut(s)	47, 166, 439, 727
RseI	CAYNNNNRTG	2 cut(s)	660, 719
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	14, 321, 465, 840
SatI	GCNGC	2 cut(s)	531, 846
Sau3AI	GATC	3 cut(s)	423, 442, 553
Sau96I	GGNCC	2 cut(s)	302, 681
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	3 cut(s)	305, 354, 471
SfoI	GGCGCC	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	681
SlaI	CTCGAG	1 cut(s)	483
SmiMI	CAYNNNNRTG	2 cut(s)	660, 719
SmlI	CTYRAG	3 cut(s)	332, 483, 839
SmoI	CTYRAG	3 cut(s)	332, 483, 839
Sse9I	AATT	4 cut(s)	246, 310, 591, 814
SsiI	CCGC	4 cut(s)	560, 674, 846, 879
SspDI	GGCGCC	1 cut(s)	349
SspMI	CTAG	4 cut(s)	366, 519, 534, 630
StyD4I	CCNGG	3 cut(s)	303, 352, 469
StyI	CCWWGG	2 cut(s)	365, 655
TaaI	ACNGT	3 cut(s)	12, 419, 784
TaiI	ACGT	3 cut(s)	167, 273, 462
TaqI	TCGA	5 cut(s)	291, 297, 484, 798, 822
TasI	AATT	4 cut(s)	246, 310, 591, 814
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	2 cut(s)	229, 893
Tru1I	TTAA	4 cut(s)	14, 321, 465, 840
Tru9I	TTAA	4 cut(s)	14, 321, 465, 840
TscAI	CASTG	2 cut(s)	69, 787
TseFI	GTSAC	3 cut(s)	34, 271, 360
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	3 cut(s)	34, 271, 360
TspDTI	ATGAA	2 cut(s)	222, 395
TspRI	CASTG	2 cut(s)	69, 787
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	681
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	591, 814
XhoI	CTCGAG	1 cut(s)	483
XmaJI	CCTAGG	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	4 cut(s)	366, 519, 534, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.