Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Reverse (-)

49411169 .. 49412525

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCGCTTGACCCGCTTAATGATTGCCCCCGTAACGCCTACTACATTGATGGTGTGTTTGCCACATCCGATGGAACGCCGTACGTTCGATCAAACATGATCTGCGTGTTCGAGAGCTATGGCGGGGATATTGGGTGGCGCCACACGGAGAGTCCGATAACGGGGATGGAGGTGAGAGAAGTGAGGCCTAAGGTGACACTAGTGGTTAGAATGGCAGCCTCAGTTGGTTGGACCGTTGGACTTAGTGGCATTTTGATGGTGAAAGGCACACCCTATGAGAACATGAACCAAGTCTTTGACCTAGACAATCTCCACGGCACACTGTTATCTGAAAACGTTGTTGGAGTTATTCATGACCATTACATAACATTTCATCTTGATATGGATGTAGACGGTTCTGAAAATTCCTTTGTTAAAGTGAATCTCCAAAGGCAGCAAACCTCTCCTGATGAGTCCCCAAGGAAAAGCTTCTTGAAAGCAACTAGAACTGTGGCCAAAACGGAGAAGGATGCACAAGTCAAGCTAAAACTCTATGACCCGTCGGAGTTCCATGTGATCAACCCGTCGAAACAGACCCGGGTTGGGAACCCTGTCGGGTATAAGGTGGTTCCTGGTGCCACTGCTGCTAGTTTGCTTGATCCTGAAGACCCTCCCCAAAAGAGGGCTGCTTTTACGAATAACCAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

229

Amino Acids

25.4

Weight (kDa)

5.86

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	2 - 229	5.8e-50	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	138, 614
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	3 cut(s)	5, 14, 123
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	4 cut(s)	161, 582, 660, 661
AgsI	TTSAA	1 cut(s)	475
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	3 cut(s)	117, 468, 523
AluI	AGCT	3 cut(s)	117, 468, 523
AlwI	GGATC	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	576
AoxI	GGCC	2 cut(s)	185, 492
ApeKI	GCWGC	4 cut(s)	215, 433, 623, 665
ApoI	RAATTY	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	2 cut(s)	577, 578
AsuHPI	GGTGA	3 cut(s)	184, 205, 271
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	231
AxyI	CCTNAGG	1 cut(s)	189
BalI	TGGCCA	1 cut(s)	494
BanI	GGYRCC	2 cut(s)	138, 614
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	4 cut(s)	227, 445, 610, 652
BccI	CCATC	4 cut(s)	44, 65, 160, 250
BceAI	ACGGC	2 cut(s)	64, 331
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	1 cut(s)	555
BcnI	CCSGG	2 cut(s)	577, 578
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	4 cut(s)	200, 302, 483, 627
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	5 cut(s)	5, 216, 434, 624, 666
BlsI	GCNGC	5 cut(s)	6, 217, 435, 625, 667
Bme1390I	CCNGG	3 cut(s)	577, 578, 612
Bme18I	GGWCC	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	4 cut(s)	140, 587, 609, 616
BmrFI	CCNGG	3 cut(s)	577, 578, 612
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	651
BpuMI	CCSGG	2 cut(s)	577, 578
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	313, 458, 576
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 582, 660, 661
Bse21I	CCTNAGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	3 cut(s)	313, 458, 576
BseGI	GGATG	4 cut(s)	65, 171, 391, 514
BseLI	CCNNNNNNNGG	4 cut(s)	161, 582, 660, 661
BseMII	CTCAG	1 cut(s)	234
BseXI	GCAGC	4 cut(s)	227, 445, 610, 652
BshFI	GGCC	2 cut(s)	187, 494
BshNI	GGYRCC	2 cut(s)	138, 614
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	577
BsiWI	CGTACG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	4 cut(s)	161, 582, 660, 661
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	187, 494
BsoBI	CYCGRG	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	89, 99, 555, 637
BspACI	CCGC	3 cut(s)	5, 14, 123
BspANI	GGCC	2 cut(s)	187, 494
BspCNI	CTCAG	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	140, 587, 609, 616
BspPI	GGATC	1 cut(s)	632
BspT107I	GGYRCC	2 cut(s)	138, 614
BssECI	CCNNGG	3 cut(s)	313, 458, 576
BssMI	GATC	4 cut(s)	89, 99, 555, 637
BssNI	GRCGYC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	4 cut(s)	235, 324, 395, 490
BstACI	GRCGYC	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	189, 220, 242
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	4 cut(s)	65, 171, 391, 514
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	4 cut(s)	92, 102, 558, 640
BstMBI	GATC	4 cut(s)	89, 99, 555, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 623
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	3 cut(s)	575, 576, 610
BstV1I	GCAGC	4 cut(s)	227, 445, 610, 652
BstV2I	GAAGAC	1 cut(s)	651
Bsu36I	CCTNAGG	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	187, 494
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	65, 171, 391, 514
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	2 cut(s)	320, 618
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	231
Cfr9I	CCCGGG	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	4 cut(s)	97, 283, 353, 551
CviJI	RGCY	7 cut(s)	117, 187, 218, 468, 494, 523, 665
CviKI_1	RGCY	7 cut(s)	117, 187, 218, 468, 494, 523, 665
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	3 cut(s)	189, 220, 242
DinI	GGCGCC	1 cut(s)	140
DpnI	GATC	4 cut(s)	91, 101, 557, 639
DpnII	GATC	4 cut(s)	89, 99, 555, 637
EaeI	YGGCCR	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	663
Eco81I	CCTNAGG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	458
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	4 cut(s)	100, 286, 356, 554
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	4 cut(s)	96, 282, 352, 550
FauI	CCCGC	2 cut(s)	21, 116
FbaI	TGATCA	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	5 cut(s)	5, 216, 434, 624, 666
FokI	GGATG	4 cut(s)	52, 178, 398, 521
Fsp4HI	GCNGC	5 cut(s)	5, 216, 434, 624, 666
FspBI	CTAG	4 cut(s)	200, 302, 483, 627
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	5 cut(s)	5, 216, 434, 624, 666
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	187, 494
HapII	CCGG	1 cut(s)	577
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	100, 286, 356, 554
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	466
HinfI	GANTC	3 cut(s)	151, 421, 452
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	3 cut(s)	184, 205, 271
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	6 cut(s)	70, 156, 331, 400, 544, 689
Hpy188III	TCNNGA	6 cut(s)	112, 353, 377, 446, 472, 641
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	2 cut(s)	544, 568
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	4 cut(s)	235, 324, 395, 490
HpyCH4IV	ACGT	2 cut(s)	84, 336
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 623
HpyF3I	CTNAG	3 cut(s)	189, 220, 242
HpySE526I	ACGT	2 cut(s)	84, 336
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	100, 286, 356, 554
HspAI	GCGC	1 cut(s)	139
KasI	GGCGCC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	89, 99, 555, 637
LpnPI	CCDG	6 cut(s)	459, 590, 597, 603, 624, 654
Lsp1109I	GCAGC	4 cut(s)	227, 445, 610, 652
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	4 cut(s)	200, 302, 483, 627
MaeII	ACGT	2 cut(s)	84, 336
MaeIII	GTNAC	2 cut(s)	32, 193
MalI	GATC	4 cut(s)	91, 101, 557, 639
MboI	GATC	4 cut(s)	89, 99, 555, 637
MboII	GAAGA	1 cut(s)	656
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	1 cut(s)	403
MluNI	TGGCCA	1 cut(s)	494
Mly113I	GGCGCC	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	160, 461
MmeI	TCCRAC	4 cut(s)	209, 217, 322, 522
MnlI	CCTC	6 cut(s)	163, 177, 229, 451, 654, 660
Mox20I	TGGCCA	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	2 cut(s)	18, 414
MslI	CAYNNNNRTG	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	494
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	3 cut(s)	577, 578, 612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	2 cut(s)	13, 623
NarI	GGCGCC	1 cut(s)	139
NciI	CCSGG	2 cut(s)	577, 578
NdeII	GATC	4 cut(s)	89, 99, 555, 637
NlaIII	CATG	4 cut(s)	100, 286, 356, 554
NlaIV	GGNNCC	4 cut(s)	140, 587, 609, 616
NmuCI	GTSAC	1 cut(s)	193
PagI	TCATGA	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	421
Pfl23II	CGTACG	1 cut(s)	81
PkrI	GCNGC	5 cut(s)	6, 217, 435, 625, 667
PleI	GAGTC	2 cut(s)	159, 460
PluTI	GGCGCC	1 cut(s)	142
PpsI	GAGTC	2 cut(s)	159, 460
Psp1406I	AACGTT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspLI	CGTACG	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	140, 587, 609, 616
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	18, 414
SatI	GCNGC	5 cut(s)	5, 216, 434, 624, 666
Sau3AI	GATC	4 cut(s)	89, 99, 555, 637
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	160, 461
ScrFI	CCNGG	3 cut(s)	577, 578, 612
SfaNI	GCATC	1 cut(s)	499
SfoI	GGCGCC	1 cut(s)	140
SinI	GGWCC	1 cut(s)	231
SmaI	CCCGGG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	199
Sse9I	AATT	1 cut(s)	403
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	5, 14, 123
SspDI	GGCGCC	1 cut(s)	138
SspMI	CTAG	4 cut(s)	200, 302, 483, 627
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	575, 576, 610
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	4 cut(s)	235, 324, 395, 490
TaiI	ACGT	2 cut(s)	87, 339
TaqI	TCGA	3 cut(s)	88, 111, 566
TasI	AATT	1 cut(s)	403
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	18, 414
Tru9I	TTAA	2 cut(s)	18, 414
TscAI	CASTG	2 cut(s)	327, 625
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	4 cut(s)	215, 433, 623, 665
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	299, 341, 362
TspGWI	ACGGA	2 cut(s)	161, 515
TspMI	CCCGGG	1 cut(s)	576
TspRI	CASTG	2 cut(s)	327, 625
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	403
XmaI	CCCGGG	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	4 cut(s)	200, 302, 483, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.