Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

15832294 .. 15833313

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG194500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAAACCCGAAACTTCTTCAGCCTTTTCTTTCTTTCGCTCTTCGTCGGATTTGTCCTTCTCTTCACTTGGGGTCACCTCCCTTACGCGCCTGCATACACGACTGACCTTCTCGACTGCACCACCAACTCAGCATGGTGCGCCTCCAAAAACCGCTTTCAGTCCAAACCGTCCAGCAACCTCATCAAAAACAAAAACCACCGCAGCCACAACCACGCCTCCGACACTCCCCACCACCCTCTCGACCCCCTCACAGTCCAAGAACTCAACAAAATCCGAACCATCCTCTCCTCCCACGCGCTCTTCAAGTCGTCCTCAGCCTACGCGCTCCACTCCATCGAGCTCGAAGAGCCCGACAAGCCTCTCGTCCTCCGATGGAAAAAGGGCGACCCGCTGCTACCCAGAAAGGCCTCCGTCATCGCACGTGCCGCCGGGAAGGCGCACGTGCTGACCGTTGACTTAGCCACGAGCGAGGTGTCCGTACAGCAGACCGGAACCCACTTCGGCTATCCGATGCTGACCATGGAGGAAATAACCGCCGCGATCTGGGTCCCACTTTCGAACGCCAAGTTCAACCGCACGATCATCCAGCGCGGCGTTGATCTGGCGGACCTTGCGTGTTTGCCGATCTCGTCGGGGTGGTTCGATGAGTACGAGGAGAACAGGAGGAGGTTGATTAAGGTACAGTGCTTCTCCACGAAGGACACCGTGAACTTTTACATGAGGCCAATCGAAGGGTTGACCGTTCTCGTTGACTTGGACGCCGAACAAGTGGTGGAGATTTCCGACAAGGGCGGGAACATTCCGATACCGAAGGCCGCCAACACAGACTATAGATACTCCGCCAGCCAGGAGGTCAGTCGAGTGATCAAGCTAGTGAATCCCATTTCCCTTGAGCAACCAAAAGGTCCAAGTTTTACCGTGGAGGACGGTCACTTAGTAAAATGGGCAAATTGGGAATTTCATGTAAAACCCGACGCCAGAGCCGGCGTGATCATATCTCAAGCTAGGGGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

339

Amino Acids

38.01

Weight (kDa)

8.26

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	79 - 160	2.7e-24	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	171 - 271	2.8e-24	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	298 - 336	1.4e-08	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	89, 299, 326, 542, 594
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	1 cut(s)	4
AcvI	CACGTG	2 cut(s)	425, 445
AcyI	GRCGYC	2 cut(s)	762, 978
AfaI	GTAC	3 cut(s)	483, 653, 684
AfiI	CCNNNNNNNGG	2 cut(s)	546, 734
AgsI	TTSAA	2 cut(s)	307, 574
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	3 cut(s)	343, 874, 1007
AluI	AGCT	3 cut(s)	343, 874, 1007
Alw21I	GWGCWC	1 cut(s)	345
AoxI	GGCC	3 cut(s)	408, 725, 816
ApeKI	GCWGC	2 cut(s)	204, 394
ApoI	RAATTY	1 cut(s)	959
AspLEI	GCGC	6 cut(s)	91, 143, 301, 328, 442, 594
AspS9I	GGNCC	4 cut(s)	550, 610, 908, 1013
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	560
AvaII	GGWCC	4 cut(s)	550, 610, 908, 1013
BanII	GRGCYC	2 cut(s)	345, 354
BauI	CACGAG	1 cut(s)	466
BbrPI	CACGTG	2 cut(s)	425, 445
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	216, 381
BccI	CCATC	3 cut(s)	290, 344, 369
BciT130I	CCWGG	1 cut(s)	851
BclI	TGATCA	2 cut(s)	867, 993
BcnI	CCSGG	1 cut(s)	433
BfaI	CTAG	2 cut(s)	875, 1008
BfmI	CTRYAG	1 cut(s)	832
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	6 cut(s)	205, 395, 429, 540, 595, 819
BlsI	GCNGC	6 cut(s)	206, 396, 430, 541, 596, 820
Bme1390I	CCNGG	2 cut(s)	433, 851
Bme18I	GGWCC	4 cut(s)	550, 610, 908, 1013
BmgT120I	GGNCC	4 cut(s)	550, 610, 908, 1013
BmiI	GGNNCC	4 cut(s)	496, 551, 552, 1014
BmrFI	CCNGG	2 cut(s)	433, 851
BmsI	GCATC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	914, 987
BpuMI	CCSGG	1 cut(s)	433
BsaAI	YACGTR	2 cut(s)	425, 445
BsaHI	GRCGYC	2 cut(s)	762, 978
BsaJI	CCNNGG	2 cut(s)	522, 921
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 734
Bse118I	RCCGGY	1 cut(s)	986
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	522, 921
BseGI	GGATG	2 cut(s)	282, 585
BseLI	CCNNNNNNNGG	2 cut(s)	546, 734
BseMII	CTCAG	2 cut(s)	144, 330
BseRI	GAGGAG	3 cut(s)	280, 671, 682
BseXI	GCAGC	2 cut(s)	216, 381
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	5 cut(s)	89, 299, 326, 542, 594
BshFI	GGCC	3 cut(s)	410, 727, 818
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	3 cut(s)	432, 492, 987
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	2 cut(s)	546, 734
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	3 cut(s)	410, 727, 818
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	345, 354
Bsp143I	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
Bsp19I	CCATGG	1 cut(s)	522
BspANI	GGCC	3 cut(s)	410, 727, 818
BspCNI	CTCAG	2 cut(s)	143, 329
BspFNI	CGCG	5 cut(s)	89, 299, 326, 542, 594
BspLI	GGNNCC	4 cut(s)	496, 551, 552, 1014
BspQI	GCTCTTC	3 cut(s)	47, 308, 342
BspT104I	TTCGAA	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	986
BssAI	RCCGGY	1 cut(s)	986
BssECI	CCNNGG	2 cut(s)	522, 921
BssMI	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
BssNI	GRCGYC	2 cut(s)	762, 978
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	8 cut(s)	171, 256, 454, 687, 709, 745, 922, 932
Bst6I	CTCTTC	4 cut(s)	47, 68, 308, 342
BstACI	GRCGYC	2 cut(s)	762, 978
BstBAI	YACGTR	2 cut(s)	425, 445
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	93, 847, 988
BstDEI	CTNAG	4 cut(s)	130, 316, 460, 937
BstDSI	CCRYGG	2 cut(s)	522, 921
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	282, 585
BstFNI	CGCG	5 cut(s)	89, 299, 326, 542, 594
BstHHI	GCGC	6 cut(s)	91, 143, 301, 328, 442, 594
BstKTI	GATC	6 cut(s)	546, 585, 604, 630, 870, 996
BstMBI	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 349, 358, 428, 437, 614
BstNI	CCWGG	1 cut(s)	851
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	431, 849
BstSFI	CTRYAG	1 cut(s)	832
BstUI	CGCG	5 cut(s)	89, 299, 326, 542, 594
BstV1I	GCAGC	2 cut(s)	216, 381
BsuRI	GGCC	3 cut(s)	410, 727, 818
BtgI	CCRYGG	2 cut(s)	522, 921
BtgZI	GCGATG	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	282, 585
BtsIMutI	CAGTG	1 cut(s)	692
Cac8I	GCNNGC	3 cut(s)	93, 847, 988
CfoI	GCGC	6 cut(s)	91, 143, 301, 328, 442, 594
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	4 cut(s)	550, 610, 908, 1013
CseI	GACGC	2 cut(s)	770, 986
Csp6I	GTAC	3 cut(s)	482, 652, 683
CviAII	CATG	4 cut(s)	135, 523, 721, 965
CviQI	GTAC	3 cut(s)	482, 652, 683
DdeI	CTNAG	4 cut(s)	130, 316, 460, 937
DpnI	GATC	6 cut(s)	545, 584, 603, 629, 869, 995
DpnII	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
Eam1104I	CTCTTC	4 cut(s)	47, 68, 308, 342
EarI	CTCTTC	4 cut(s)	47, 68, 308, 342
EciI	GGCGGA	2 cut(s)	623, 832
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	345, 354
Eco47I	GGWCC	4 cut(s)	550, 610, 908, 1013
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	4
Eco72I	CACGTG	2 cut(s)	425, 445
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	345, 354
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	138, 526, 724, 968
FaiI	YATR	7 cut(s)	97, 136, 524, 722, 834, 966, 998
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	4 cut(s)	134, 522, 720, 964
FauI	CCCGC	2 cut(s)	399, 788
FbaI	TGATCA	2 cut(s)	867, 993
Fnu4HI	GCNGC	6 cut(s)	205, 395, 429, 540, 595, 819
FokI	GGATG	2 cut(s)	269, 572
FriOI	GRGCYC	2 cut(s)	345, 354
Fsp4HI	GCNGC	6 cut(s)	205, 395, 429, 540, 595, 819
FspBI	CTAG	2 cut(s)	875, 1008
GlaI	GCGC	6 cut(s)	90, 142, 300, 327, 441, 593
GluI	GCNGC	6 cut(s)	205, 395, 429, 540, 595, 819
HaeIII	GGCC	3 cut(s)	410, 727, 818
HapII	CCGG	3 cut(s)	432, 492, 987
HgaI	GACGC	2 cut(s)	770, 986
HhaI	GCGC	6 cut(s)	91, 143, 301, 328, 442, 594
Hin1I	GRCGYC	2 cut(s)	762, 978
Hin1II	CATG	4 cut(s)	138, 526, 724, 968
Hin6I	GCGC	6 cut(s)	89, 141, 299, 326, 440, 592
HinP1I	GCGC	6 cut(s)	89, 141, 299, 326, 440, 592
HincII	GTYRAC	3 cut(s)	457, 741, 754
HindII	GTYRAC	3 cut(s)	457, 741, 754
HinfI	GANTC	1 cut(s)	880
HpaII	CCGG	3 cut(s)	432, 492, 987
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	4 cut(s)	457, 712, 741, 754
Hpy188I	TCNGA	7 cut(s)	50, 223, 278, 374, 513, 787, 807
Hpy188III	TCNNGA	2 cut(s)	113, 242
Hpy8I	GTNNAC	4 cut(s)	457, 712, 741, 754
Hpy99I	CGWCG	3 cut(s)	50, 637, 980
HpyAV	CCTTC	6 cut(s)	68, 119, 430, 694, 728, 808
HpyCH4III	ACNGT	8 cut(s)	171, 256, 454, 687, 709, 745, 922, 932
HpyCH4IV	ACGT	2 cut(s)	424, 444
HpyCH4V	TGCA	2 cut(s)	95, 120
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 349, 358, 428, 437, 614
HpyF3I	CTNAG	4 cut(s)	130, 316, 460, 937
HpySE526I	ACGT	2 cut(s)	424, 444
Hsp92I	GRCGYC	2 cut(s)	762, 978
Hsp92II	CATG	4 cut(s)	138, 526, 724, 968
HspAI	GCGC	6 cut(s)	89, 141, 299, 326, 440, 592
KflI	GGGWCCC	1 cut(s)	550
KroI	GCCGGC	1 cut(s)	986
KroNI	GCCGGC	1 cut(s)	988
Ksp22I	TGATCA	2 cut(s)	867, 993
Kzo9I	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
LguI	GCTCTTC	3 cut(s)	47, 308, 342
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	2 cut(s)	216, 381
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	2 cut(s)	875, 1008
MaeII	ACGT	2 cut(s)	424, 444
MaeIII	GTNAC	2 cut(s)	74, 932
MalI	GATC	6 cut(s)	545, 584, 603, 629, 869, 995
MboI	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
MboII	GAAGA	5 cut(s)	10, 34, 55, 295, 359
MhlI	GDGCHC	2 cut(s)	345, 354
MluCI	AATT	2 cut(s)	952, 959
MmeI	TCCRAC	3 cut(s)	28, 246, 810
MroNI	GCCGGC	1 cut(s)	986
MseI	TTAA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	3 cut(s)	432, 492, 987
MspR9I	CCNGG	2 cut(s)	433, 851
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	5 cut(s)	89, 299, 326, 542, 594
MwoI	GCNNNNNNNGC	6 cut(s)	140, 349, 358, 428, 437, 614
NaeI	GCCGGC	1 cut(s)	988
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
NgoMIV	GCCGGC	1 cut(s)	986
NlaIII	CATG	4 cut(s)	138, 526, 724, 968
NlaIV	GGNNCC	4 cut(s)	496, 551, 552, 1014
NmuCI	GTSAC	2 cut(s)	74, 932
NspV	TTCGAA	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	410
PciSI	GCTCTTC	3 cut(s)	47, 308, 342
PcsI	WCGNNNNNNNCGW	3 cut(s)	351, 450, 651
PdiI	GCCGGC	1 cut(s)	988
PfeI	GAWTC	1 cut(s)	880
PkrI	GCNGC	6 cut(s)	206, 396, 430, 541, 596, 820
PmaCI	CACGTG	2 cut(s)	425, 445
PmlI	CACGTG	2 cut(s)	425, 445
Ppu21I	YACGTR	2 cut(s)	425, 445
PpuMI	RGGWCCY	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	345
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	849
PspCI	CACGTG	2 cut(s)	425, 445
PspEI	GGTNACC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	4 cut(s)	496, 551, 552, 1014
PspPI	GGNCC	4 cut(s)	550, 610, 908, 1013
PspPPI	RGGWCCY	1 cut(s)	550
RsaI	GTAC	3 cut(s)	483, 653, 684
RsaNI	GTAC	3 cut(s)	482, 652, 683
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	3 cut(s)	47, 308, 342
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	6 cut(s)	205, 395, 429, 540, 595, 819
Sau3AI	GATC	6 cut(s)	543, 582, 601, 627, 867, 993
Sau96I	GGNCC	4 cut(s)	550, 610, 908, 1013
ScrFI	CCNGG	2 cut(s)	433, 851
SduI	GDGCHC	2 cut(s)	345, 354
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	832
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	4 cut(s)	550, 610, 908, 1013
SmlI	CTYRAG	2 cut(s)	893, 1002
SmoI	CTYRAG	2 cut(s)	893, 1002
Sse9I	AATT	2 cut(s)	952, 959
SseBI	AGGCCT	1 cut(s)	410
SspMI	CTAG	2 cut(s)	875, 1008
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	431, 849
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	8 cut(s)	171, 256, 454, 687, 709, 745, 922, 932
TaiI	ACGT	2 cut(s)	427, 447
TaqI	TCGA	8 cut(s)	114, 243, 339, 345, 560, 645, 732, 862
TasI	AATT	2 cut(s)	952, 959
TauI	GCSGC	4 cut(s)	431, 542, 597, 821
TfiI	GAWTC	1 cut(s)	880
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	2 cut(s)	74, 932
TseI	GCWGC	2 cut(s)	204, 394
Tsp45I	GTSAC	2 cut(s)	74, 932
TspDTI	ATGAA	1 cut(s)	953
TspGWI	ACGGA	3 cut(s)	403, 469, 1005
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	4 cut(s)	550, 610, 908, 1013
XapI	RAATTY	1 cut(s)	959
XspI	CTAG	2 cut(s)	875, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.