Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004811.1

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

35067 .. 37394

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004811.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgaaaggcggtccgatcagaagagggagcctatttgatgggctgaaccacataattcctcgcataaccatatatactctcctcatggctgatgttgttaattacgggaaactacgtccacttgaatgtgtactagtgtgtcgaaattcctttgttaaagtgaatctccaaaggcagcaaacctctcctgatgagtccccaaggaaaagcttcttgaaagcaactagaactgtggccaaaacggagaaggatgcacaagtcaagctaagactctatgacccgtcggagttccatgtgatcaacccgtcgaaacagacccgggttgggaaccctgtcgggtataaggtggttcctggtgccactgctgctagtttgcttgatcctgaagaccctccccaaaagagggctgcttttacgaataaccaaatctgggtcactcaatacaatcggagtgagcagtgggcaggtgggttgtttgcttaccaaagccatggagaagatactttggccatgtggtctgacaaggatcgagaaattgagaataaagacattgtggtttggtacacattagggtttcatcacatgccatgccaagaagactttcctataatgccgatgctccctcatttacattttctaagatgtgggactcaaagttactattctagtctagaaaagcatattatggaggcaacttggcaaggtcggaaaggtggcttcccggcgacggatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

245

Amino Acids

27.94

Weight (kDa)

8.97

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	356
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	2 cut(s)	374, 534
AcoI	YGGCCR	2 cut(s)	234, 507
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	2 cut(s)	132, 563
AfiI	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
AgsI	TTSAA	2 cut(s)	125, 217
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	2 cut(s)	210, 265
AluI	AGCT	2 cut(s)	210, 265
AlwI	GGATC	2 cut(s)	374, 534
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	2 cut(s)	234, 507
ApeKI	GCWGC	3 cut(s)	175, 365, 407
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	2 cut(s)	209, 600
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	3 cut(s)	319, 320, 722
AvaI	CYCGRG	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	11
BalI	TGGCCA	2 cut(s)	236, 509
BanI	GGYRCC	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	393, 603
BbvI	GCAGC	3 cut(s)	187, 352, 394
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	354
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	3 cut(s)	319, 320, 722
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	5 cut(s)	134, 225, 369, 666, 671
BfuAI	ACCTGC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	176, 366, 408
BlsI	GCNGC	3 cut(s)	177, 367, 409
Bme1390I	CCNGG	4 cut(s)	319, 320, 354, 722
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	318
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	4 cut(s)	29, 329, 351, 358
BmrFI	CCNGG	4 cut(s)	319, 320, 354, 722
BmsI	GCATC	2 cut(s)	241, 606
BpiI	GAAGAC	2 cut(s)	393, 603
BpuMI	CCSGG	3 cut(s)	319, 320, 722
BsaJI	CCNNGG	3 cut(s)	200, 318, 490
Bsc4I	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	3 cut(s)	200, 318, 490
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	187, 352, 394
BshFI	GGCC	2 cut(s)	236, 509
BshNI	GGYRCC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	319, 722
BslFI	GGGAC	2 cut(s)	181, 661
BslI	CCNNNNNNNGG	5 cut(s)	324, 402, 403, 430, 727
BsmFI	GGGAC	2 cut(s)	181, 661
BsnI	GGCC	2 cut(s)	236, 509
BsoBI	CYCGRG	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	15, 297, 379, 526
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	236, 509
BspLI	GGNNCC	4 cut(s)	29, 329, 351, 358
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	2 cut(s)	374, 534
BspT107I	GGYRCC	1 cut(s)	356
BssECI	CCNNGG	3 cut(s)	200, 318, 490
BssMI	GATC	4 cut(s)	15, 297, 379, 526
BssT1I	CCWWGG	2 cut(s)	200, 490
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	266, 638
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	4 cut(s)	18, 300, 382, 529
BstMBI	GATC	4 cut(s)	15, 297, 379, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	4 cut(s)	317, 318, 352, 720
BstV1I	GCAGC	3 cut(s)	187, 352, 394
BstV2I	GAAGAC	2 cut(s)	393, 603
BstXI	CCANNNNNNTGG	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	236, 509
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	2 cut(s)	360, 464
BtsIMutI	CAGTG	2 cut(s)	360, 464
BveI	ACCTGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	11
Cfr9I	CCCGGG	1 cut(s)	318
CpoI	CGGWCCG	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	131, 562
CspI	CGGWCCG	1 cut(s)	11
CviAII	CATG	6 cut(s)	85, 293, 491, 511, 583, 588
CviQI	GTAC	2 cut(s)	131, 562
DdeI	CTNAG	2 cut(s)	266, 638
DpnI	GATC	4 cut(s)	17, 299, 381, 528
DpnII	GATC	4 cut(s)	15, 297, 379, 526
EaeI	YGGCCR	2 cut(s)	234, 507
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	200, 490
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	200, 490
ErhI	CCWWGG	2 cut(s)	200, 490
FaeI	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
FaqI	GGGAC	2 cut(s)	181, 661
FatI	CATG	6 cut(s)	84, 292, 490, 510, 582, 587
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	176, 366, 408
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	176, 366, 408
FspBI	CTAG	5 cut(s)	134, 225, 369, 666, 671
GluI	GCNGC	3 cut(s)	176, 366, 408
HaeIII	GGCC	2 cut(s)	236, 509
HapII	CCGG	2 cut(s)	319, 722
Hin1II	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	4 cut(s)	163, 194, 270, 649
HpaII	CCGG	2 cut(s)	319, 722
Hpy166II	GTNNAC	3 cut(s)	119, 131, 564
Hpy188I	TCNGA	6 cut(s)	15, 20, 286, 450, 520, 708
Hpy188III	TCNNGA	5 cut(s)	188, 214, 383, 530, 671
Hpy8I	GTNNAC	3 cut(s)	119, 131, 564
Hpy99I	CGWCG	3 cut(s)	286, 310, 730
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	2 cut(s)	266, 638
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	15, 297, 379, 526
LmnI	GCTCC	2 cut(s)	27, 624
LpnPI	CCDG	8 cut(s)	201, 332, 339, 345, 366, 396, 415, 450
Lsp1109I	GCAGC	3 cut(s)	187, 352, 394
LweI	GCATC	2 cut(s)	241, 606
MaeI	CTAG	5 cut(s)	134, 225, 369, 666, 671
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	433, 656
MalI	GATC	4 cut(s)	17, 299, 381, 528
MboI	GATC	4 cut(s)	15, 297, 379, 526
MboII	GAAGA	4 cut(s)	33, 398, 509, 608
MlsI	TGGCCA	2 cut(s)	236, 509
MluCI	AATT	4 cut(s)	54, 100, 145, 534
MluNI	TGGCCA	2 cut(s)	236, 509
MlyI	GAGTC	3 cut(s)	203, 264, 643
MmeI	TCCRAC	2 cut(s)	264, 686
MnlI	CCTC	8 cut(s)	17, 69, 92, 193, 396, 402, 633, 682
Mox20I	TGGCCA	2 cut(s)	236, 509
MroXI	GAANNNNTTC	2 cut(s)	209, 600
MscI	TGGCCA	2 cut(s)	236, 509
MseI	TTAA	2 cut(s)	99, 156
MslI	CAYNNNNRTG	1 cut(s)	124
Msp20I	TGGCCA	2 cut(s)	236, 509
MspI	CCGG	2 cut(s)	319, 722
MspR9I	CCNGG	4 cut(s)	319, 320, 354, 722
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	3 cut(s)	319, 320, 722
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	4 cut(s)	15, 297, 379, 526
NlaIII	CATG	6 cut(s)	88, 296, 494, 514, 586, 591
NlaIV	GGNNCC	4 cut(s)	29, 329, 351, 358
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	586
PaqCI	CACCTGC	1 cut(s)	455
PdmI	GAANNNNTTC	2 cut(s)	209, 600
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	177, 367, 409
PleI	GAGTC	3 cut(s)	202, 264, 643
PpsI	GAGTC	3 cut(s)	202, 264, 643
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	29, 329, 351, 358
PspPI	GGNCC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	132, 563
RsaNI	GTAC	2 cut(s)	131, 562
RseI	CAYNNNNRTG	1 cut(s)	124
Rsr2I	CGGWCCG	1 cut(s)	11
RsrII	CGGWCCG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	99, 156
SatI	GCNGC	3 cut(s)	176, 366, 408
Sau3AI	GATC	4 cut(s)	15, 297, 379, 526
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	3 cut(s)	203, 264, 643
ScrFI	CCNGG	4 cut(s)	319, 320, 354, 722
SetI	ASST	8 cut(s)	118, 185, 212, 267, 348, 469, 706, 715
SfaNI	GCATC	2 cut(s)	241, 606
SinI	GGWCC	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	124
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	4 cut(s)	54, 100, 145, 534
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	5 cut(s)	134, 225, 369, 666, 671
StyD4I	CCNGG	4 cut(s)	317, 318, 352, 720
StyI	CCWWGG	2 cut(s)	200, 490
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	142, 308, 529
TasI	AATT	4 cut(s)	54, 100, 145, 534
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	99, 156
Tru9I	TTAA	2 cut(s)	99, 156
TscAI	CASTG	2 cut(s)	367, 464
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	3 cut(s)	175, 365, 407
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	17, 566
TspGWI	ACGGA	1 cut(s)	257
TspMI	CCCGGG	1 cut(s)	318
TspRI	CASTG	2 cut(s)	367, 464
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	1 cut(s)	586
XmaI	CCCGGG	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	209, 600
XspI	CTAG	5 cut(s)	134, 225, 369, 666, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.