Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

18766044 .. 18767853

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1075500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTACAAAGGGTTTACGTCAGAGTTGTTTGTGCCTTACATGGACCCCACCGATGCGTGGTACTTTAAGACCTATATGGATGCCGGTGAATACGGGTTCGGGTTACAGGCAATGTCTTTGGAGCCGCTTAACGATTATTCGCGTCACGCCTACTATATGGATGGTGTGTTTGTGGCAGCTGATGGAAAATCATACGTCCGATCAAACATGGTTTGCATATTCAAGAGCTATACAGGCGATATCGGGTGGCGGCACACAGAGTGTCCGATAATGGGCATGGAGGGAAGTGAAAAGGTGACATTGGTAGTTAGAATGGCAGCATCAGTTGCTAACTATGATTATATCGTCGACTGGGAGTTCCAAACAGACGGACTAATCAGAGTTAAGGTTGGACTTAGTGGCATTTTGATGGTGAAAGGCACTTCCTATGAGAACATGAACCAAGCCTCATCTAGCCAAGAGAATCTCTATGGCACCCTCTTGTCGGAGAACGTTATTGGTGTTATTCGCGATCATTACGTCACATTTCATCTTGATATGGACGTGGACGGCTCAGATAACTCCTTTATGAAGGTGAATCTCCAAAGGCAGTCCAACTCCCCAACTGAATCACCCAGGAAAAGCTACTTGAAAGCTACTAAAACCGTTGCCAAAACTGAGAAAGATGTACAGATTAAGCTCAAACTCTACGACCCGTCCGAATTCCACATGATCAACCCGTCAAAAAGGACACGGGTTGGAAACCCTGTAGGGTACAAGTTGGTTCCCGGTGGCACTGCTGCTAGCTTGCTTGATCTTGACGACCCTCCCCAAAAGAAAGGTGCTTTTACAAACAATCAAATTTGGGTTACCCCATACAATAGGAGTGAACAATGGGCTGGTGGGTTGTTTGTAGACCAAAGCACGGGCGAAGATACTCTTGCCGGACCGACCAATCGAGAACAAGGACATTGTGGTTTGGTACACATTAGGGTTTCATCACATACCGACTTCCCTATAATGCCAACTGTGTCATCTAGCTTCGATATCAAACCTGTCAATTTCTTTGAGAGTAACCCCATACTTCGGACTCCGCCTAACGTTGCCACAGATATACCCGTTTGCACGGCTGCTGCTTCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

375

Amino Acids

41.62

Weight (kDa)

5.53

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	1 - 354	1.9e-94	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccI	GTMKAC	2 cut(s)	348, 894
AccII	CGCG	2 cut(s)	142, 510
AciI	CCGC	4 cut(s)	125, 250, 1073, 1119
AclI	AACGTT	2 cut(s)	492, 1080
AcsI	RAATTY	2 cut(s)	701, 840
AdeI	CACNNNGTG	1 cut(s)	261
AfaI	GTAC	5 cut(s)	5, 62, 669, 755, 963
AfiI	CCNNNNNNNGG	5 cut(s)	57, 272, 484, 904, 1065
AgsI	TTSAA	2 cut(s)	223, 631
AjiI	CACGTC	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	614
AluBI	AGCT	7 cut(s)	179, 228, 624, 635, 679, 786, 1020
AluI	AGCT	7 cut(s)	179, 228, 624, 635, 679, 786, 1020
ApeKI	GCWGC	5 cut(s)	176, 317, 779, 1109, 1112
ApoI	RAATTY	2 cut(s)	701, 840
AspS9I	GGNCC	2 cut(s)	43, 926
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	5 cut(s)	98, 307, 424, 586, 603
AsuNHI	GCTAGC	1 cut(s)	782
AvaII	GGWCC	2 cut(s)	43, 926
BanI	GGYRCC	1 cut(s)	473
BbvI	GCAGC	5 cut(s)	188, 329, 766, 1096, 1099
BccI	CCATC	3 cut(s)	155, 176, 403
BceAI	ACGGC	2 cut(s)	565, 1122
BciT130I	CCWGG	1 cut(s)	616
BclI	TGATCA	1 cut(s)	711
BcnI	CCSGG	1 cut(s)	768
BfaI	CTAG	3 cut(s)	453, 783, 1017
BfmI	CTRYAG	1 cut(s)	747
BisI	GCNGC	7 cut(s)	125, 177, 251, 318, 780, 1110, 1113
BlsI	GCNGC	7 cut(s)	126, 178, 252, 319, 781, 1111, 1114
Bme1390I	CCNGG	2 cut(s)	616, 768
Bme18I	GGWCC	2 cut(s)	43, 926
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	43, 926
BmiI	GGNNCC	4 cut(s)	45, 123, 475, 765
BmrFI	CCNGG	2 cut(s)	616, 768
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	3 cut(s)	43, 70, 329
BmtI	GCTAGC	1 cut(s)	786
BmuI	ACTGGG	1 cut(s)	361
BpuMI	CCSGG	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	5 cut(s)	57, 272, 484, 904, 1065
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	616
BseDI	CCNNGG	1 cut(s)	614
BseGI	GGATG	2 cut(s)	85, 166
BseLI	CCNNNNNNNGG	5 cut(s)	57, 272, 484, 904, 1065
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	567, 648
BseNI	ACTGG	1 cut(s)	356
BseXI	GCAGC	5 cut(s)	188, 329, 766, 1096, 1099
Bsh1236I	CGCG	2 cut(s)	142, 510
BshNI	GGYRCC	1 cut(s)	473
BsiSI	CCGG	3 cut(s)	84, 768, 924
BslI	CCNNNNNNNGG	5 cut(s)	57, 272, 484, 904, 1065
Bsp1407I	TGTACA	2 cut(s)	3, 667
Bsp143I	GATC	4 cut(s)	200, 511, 711, 793
Bsp68I	TCGCGA	1 cut(s)	510
BspACI	CCGC	4 cut(s)	125, 250, 1073, 1119
BspCNI	CTCAG	2 cut(s)	566, 649
BspFNI	CGCG	2 cut(s)	142, 510
BspLI	GGNNCC	4 cut(s)	45, 123, 475, 765
BspOI	GCTAGC	1 cut(s)	786
BspT107I	GGYRCC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	83
BsrGI	TGTACA	2 cut(s)	3, 667
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	4 cut(s)	200, 511, 711, 793
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	2 cut(s)	646, 1009
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstAUI	TGTACA	2 cut(s)	3, 667
BstC8I	GCNNGC	2 cut(s)	784, 788
BstDEI	CTNAG	3 cut(s)	395, 553, 657
BstEII	GGTNACC	1 cut(s)	847
BstF5I	GGATG	2 cut(s)	85, 166
BstFNI	CGCG	2 cut(s)	142, 510
BstKTI	GATC	4 cut(s)	203, 514, 714, 796
BstMBI	GATC	4 cut(s)	200, 511, 711, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 326, 1118
BstNI	CCWGG	1 cut(s)	616
BstPI	GGTNACC	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	614, 766
BstSFI	CTRYAG	1 cut(s)	747
BstUI	CGCG	2 cut(s)	142, 510
BstV1I	GCAGC	5 cut(s)	188, 329, 766, 1096, 1099
BtrI	CACGTC	1 cut(s)	544
BtsCI	GGATG	2 cut(s)	85, 166
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	1 cut(s)	774
BtuMI	TCGCGA	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	784, 788
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	43, 926
CpoI	CGGWCCG	1 cut(s)	926
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	5 cut(s)	4, 61, 668, 754, 962
CspI	CGGWCCG	1 cut(s)	926
CviAII	CATG	5 cut(s)	40, 208, 277, 436, 709
CviQI	GTAC	5 cut(s)	4, 61, 668, 754, 962
DdeI	CTNAG	3 cut(s)	395, 553, 657
DpnI	GATC	4 cut(s)	202, 513, 713, 795
DpnII	GATC	4 cut(s)	200, 511, 711, 793
DraIII	CACNNNGTG	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	1062
Eco32I	GATATC	2 cut(s)	241, 1027
Eco47I	GGWCC	2 cut(s)	43, 926
Eco91I	GGTNACC	1 cut(s)	847
EcoO65I	GGTNACC	1 cut(s)	847
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	614
EcoRV	GATATC	2 cut(s)	241, 1027
FaeI	CATG	5 cut(s)	43, 211, 280, 439, 712
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FatI	CATG	5 cut(s)	39, 207, 276, 435, 708
FbaI	TGATCA	1 cut(s)	711
FblI	GTMKAC	2 cut(s)	348, 894
Fnu4HI	GCNGC	7 cut(s)	125, 177, 251, 318, 780, 1110, 1113
FokI	GGATG	2 cut(s)	92, 173
Fsp4HI	GCNGC	7 cut(s)	125, 177, 251, 318, 780, 1110, 1113
FspBI	CTAG	3 cut(s)	453, 783, 1017
GluI	GCNGC	7 cut(s)	125, 177, 251, 318, 780, 1110, 1113
HapII	CCGG	3 cut(s)	84, 768, 924
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	43, 211, 280, 439, 712
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	4 cut(s)	463, 577, 608, 1069
HpaII	CCGG	3 cut(s)	84, 768, 924
HphI	GGTGA	5 cut(s)	98, 307, 424, 586, 603
Hpy166II	GTNNAC	6 cut(s)	15, 349, 547, 869, 895, 964
Hpy188I	TCNGA	8 cut(s)	22, 200, 267, 380, 487, 556, 700, 1068
Hpy188III	TCNNGA	5 cut(s)	223, 509, 533, 797, 938
Hpy8I	GTNNAC	6 cut(s)	15, 349, 547, 869, 895, 964
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	2 cut(s)	646, 1009
HpyCH4IV	ACGT	6 cut(s)	17, 195, 492, 519, 543, 1080
HpyCH4V	TGCA	2 cut(s)	216, 1104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 326, 1118
HpyF3I	CTNAG	3 cut(s)	395, 553, 657
HpySE526I	ACGT	6 cut(s)	17, 195, 492, 519, 543, 1080
Hsp92II	CATG	5 cut(s)	43, 211, 280, 439, 712
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	4 cut(s)	200, 511, 711, 793
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	5 cut(s)	188, 329, 766, 1096, 1099
LweI	GCATC	3 cut(s)	43, 70, 329
MaeI	CTAG	3 cut(s)	453, 783, 1017
MaeII	ACGT	6 cut(s)	17, 195, 492, 519, 543, 1080
MaeIII	GTNAC	6 cut(s)	102, 143, 295, 520, 847, 1052
MalI	GATC	4 cut(s)	202, 513, 713, 795
MboI	GATC	4 cut(s)	200, 511, 711, 793
MboII	GAAGA	1 cut(s)	923
MluCI	AATT	3 cut(s)	701, 840, 1039
MlyI	GAGTC	1 cut(s)	1063
MmeI	TCCRAC	4 cut(s)	370, 465, 618, 718
MnlI	CCTC	4 cut(s)	274, 457, 488, 816
MseI	TTAA	5 cut(s)	66, 129, 384, 675, 1123
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	3 cut(s)	84, 768, 924
MspR9I	CCNGG	2 cut(s)	616, 768
MvaI	CCWGG	1 cut(s)	616
MvnI	CGCG	2 cut(s)	142, 510
MwoI	GCNNNNNNNGC	3 cut(s)	234, 326, 1118
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	4 cut(s)	200, 511, 711, 793
NheI	GCTAGC	1 cut(s)	782
NlaIII	CATG	5 cut(s)	43, 211, 280, 439, 712
NlaIV	GGNNCC	4 cut(s)	45, 123, 475, 765
NmuCI	GTSAC	3 cut(s)	143, 295, 520
NruI	TCGCGA	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	463, 577, 608
PkrI	GCNGC	7 cut(s)	126, 178, 252, 319, 781, 1111, 1114
PleI	GAGTC	1 cut(s)	1063
PpsI	GAGTC	1 cut(s)	1063
Psp1406I	AACGTT	2 cut(s)	492, 1080
Psp6I	CCWGG	1 cut(s)	614
PspEI	GGTNACC	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	4 cut(s)	45, 123, 475, 765
PspPI	GGNCC	2 cut(s)	43, 926
PvuII	CAGCTG	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	510
RsaI	GTAC	5 cut(s)	5, 62, 669, 755, 963
RsaNI	GTAC	5 cut(s)	4, 61, 668, 754, 962
RseI	CAYNNNNRTG	1 cut(s)	407
Rsr2I	CGGWCCG	1 cut(s)	926
RsrII	CGGWCCG	1 cut(s)	926
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	5 cut(s)	66, 129, 384, 675, 1123
SatI	GCNGC	7 cut(s)	125, 177, 251, 318, 780, 1110, 1113
Sau3AI	GATC	4 cut(s)	200, 511, 711, 793
Sau96I	GGNCC	2 cut(s)	43, 926
SchI	GAGTC	1 cut(s)	1063
ScrFI	CCNGG	2 cut(s)	616, 768
SfaNI	GCATC	3 cut(s)	43, 70, 329
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	2 cut(s)	43, 926
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	701, 840, 1039
SsiI	CCGC	4 cut(s)	125, 250, 1073, 1119
SspMI	CTAG	3 cut(s)	453, 783, 1017
StyD4I	CCNGG	2 cut(s)	614, 766
TaaI	ACNGT	2 cut(s)	646, 1009
TaiI	ACGT	6 cut(s)	20, 198, 495, 522, 546, 1083
TaqI	TCGA	3 cut(s)	348, 937, 1023
TaqII	GACCGA	1 cut(s)	943
TasI	AATT	3 cut(s)	701, 840, 1039
TatI	WGTACW	2 cut(s)	3, 667
TauI	GCSGC	2 cut(s)	127, 253
TfiI	GAWTC	3 cut(s)	463, 577, 608
Tru1I	TTAA	5 cut(s)	66, 129, 384, 675, 1123
Tru9I	TTAA	5 cut(s)	66, 129, 384, 675, 1123
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	3 cut(s)	143, 295, 520
TseI	GCWGC	5 cut(s)	176, 317, 779, 1109, 1112
Tsp45I	GTSAC	3 cut(s)	143, 295, 520
TspDTI	ATGAA	4 cut(s)	452, 518, 584, 966
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	781
VpaK11BI	GGWCC	2 cut(s)	43, 926
XapI	RAATTY	2 cut(s)	701, 840
XmiI	GTMKAC	2 cut(s)	348, 894
XspI	CTAG	3 cut(s)	453, 783, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.