Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

17203047 .. 17206031

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG192500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGGAAAGCCCAAACTTCTTCAGCCTTTTCTTTCTTTCGCTCTGCGTCGGATTTGTCCTCCTCTTCACTTGGGGTCACCTCCCTTACGCGCCTCCATACACGACCGACCTTCTCGACTGCACCACCAACTCAGCATGGTGCGCCTCCAAAAACCGCTCTCAGTCCAAACCGTCCAGCAACCTCATCAAAAACAAAAACCACCGCAGCCACAACCACGCCTCCGACATTCCCCACCACCCTCTCGATCCCCTCACAGTCCAAGAACTCAACAAAATCCGAACCATCCTCTCCTCCCACGCGCTCTTCAAGTCGTCCTCAGCCTACGCGCTCCACTCCATCGAGCTCGAAGAGCCCGACAAGCCTTTCGTCCTCCGATGGAAAAAGGGCGACCCGCTGCTACCCAGAAAGGCCTCCGTCATCGCACGTGCCTCCGGGAACGCGCACGTGCTGACCGTTGACCTGGCCACGAGCGAGGTGTCCGTACAGCAGACCGGAACCCACTTCGGCTATCCGATGCTGACCATGGAGGAAATAGCCGCCGCGATCTGGGTCCCACTTTCGAACGCCAAGTTCAACCGCACGATCATCCAGCGCGGCGTTGATCTGGCGGACCTTGCGTGTTTGCCGATCTCGTCGGGGTGGTTCGATGAGTACGAGGAGAACAGGAGGAGGTTGATTAAGGTACAGTGCTTCTCCACGAAGGACACTGTGAACTTTTACATGAGGCCAATCGAAGGGTTGACCGTTCTCGTTGACTTGGACGCCGAACAAGTGGTGGAGATTTCGGAAAAGGGCGGGAACATTCCGATACCGAAGGCCGCCAACACAGACTATAGATACTCCGCCAGCCAGGAGGTCAGTCGAGTGAACAAGCTAGTGAATCCCATTTCCATTGAGCAACCAGAAGGTCCAAGTTTTACCGTGGAGGACGGTCACTTAGTAAAATGGGCAAATTGGGAATTTCATGTAAAAGCCGACGCCAGAGCGGGCGTGATCATATCTGAAGCTAGGGTCCGTGACCCAGATACCGGTGACCAAAGGGACGTGATGTACAAAGGGTTTCCGTCGGAGCTGTTTGTGCCTTACATGGACCCCACGGATGCATGGTACTTCAAGACTTATATGGATGCGGGCGAATACGGGTTCGGGTTGCAGGCCATGCCGCTCGACCCGCTTAATGATTGCCCCCGTAACGCCTACTACATTGATGGTGTGTTTGCCACATCCGATGGAACGCCGTACGTCCGATCAAACATGATCTGCGTGTTCGAGAGCTATGGCGGGGATATCGGGTGGCGCCACACGGAGAGTCCGATAACGGGAACGGAGGTGAGAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGAATGGCAGCCTCAGTTGGTAACTATGACTATATCGTGGACTGGGAGTTCCAAACAGACGGATTAATCAGAGTAAAGGTTGGACTTAGTGGCATTTTGATGGTGAAAGGCACACCCTATGAGAACATGAACCAAGTCTTTGACCAAGACAATCTCCACGGCACTCTGTTATCTGAAAACGTTGTTGGAGTTATTCATGACCATTACATAACATTTCATCTTGATATGGATGTAGACGGTTCTGAAAATTCCTTTGTTAAAGTGAATCTCCAAAGGCAGCAAACCTCTCCTGATGAGTCGCCAAGGAAAAGCTTCTTGAAAGCAACTAGAACTGTGGCCAAAACGGAGAAGGATGCACAAGTTAAGCTAAAATTACTCTATGACCCGGCGGAGTTCCATGTGATCAACCAGTTGAAACAGACCCGGGTTGGGAACCCTTTCGGGTATAAGGTGGTTCCTGGTGCCACTGCTGCTAGTTTGCTTGATCCTGAAGACCCTCCCCAAAAGAGGGCTGCTTTTACGAATAACCAAATCTGGGTCACTCAATACAATCGGAGTGAGCGGTGGGCAGGTGGGTTGTTTGCTTACCAAAGCCATGGAGAAGATACTTTGGCCATGTGGTCTGACAAGGATCGAGAAATTGAGAATAAAGACATTGTGGTTTGTTACACATTAGGGTTTCATCACATACCATGCCAAGAAGACTTTCCTATAATGCCGACGGTGTCATCTAGCTTTGATTTGAAGCCTGTGAATTTCTTTCAGAGCAACCCCATACTCCGGACTCCTCCTAATGTTGAGAGCGATTTGCCGGTTTGCTCACCTGTTGCTTCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

734

Amino Acids

82.51

Weight (kDa)

5.54

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	79 - 160	5.7e-23	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	171 - 271	2.1e-23	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	297 - 714	1.5e-137	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1925
Acc36I	ACCTGC	1 cut(s)	1925
AccB1I	GGYRCC	2 cut(s)	1296, 1826
AccBSI	CCGCTC	4 cut(s)	156, 986, 1165, 1927
AccI	GTMKAC	1 cut(s)	1599
AccII	CGCG	6 cut(s)	89, 299, 326, 440, 542, 594
AccIII	TCCGGA	1 cut(s)	2145
AclI	AACGTT	1 cut(s)	1545
AclWI	GGATC	3 cut(s)	239, 1844, 2004
AcoI	YGGCCR	3 cut(s)	462, 1701, 1977
AcsI	RAATTY	3 cut(s)	959, 1612, 2119
AcuI	CTGAAG	3 cut(s)	4, 1023, 1875
AcvI	CACGTG	2 cut(s)	425, 445
AcyI	GRCGYC	3 cut(s)	762, 978, 1297
AfaI	GTAC	6 cut(s)	483, 653, 684, 1052, 1109, 1241
AfiI	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1794, 1872, 1873, 1900, 2145
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	7 cut(s)	307, 574, 1114, 1684, 1780, 2110, 2199
AhlI	ACTAGT	1 cut(s)	1357
AjiI	CACGTC	1 cut(s)	1045
AjnI	CCWGG	3 cut(s)	459, 849, 1822
AjuI	GAANNNNNNNTTGG	4 cut(s)	1533, 1565, 2055, 2087
AloI	GAACNNNNNNTCC	2 cut(s)	1397, 1429
AluBI	AGCT	8 cut(s)	343, 874, 1007, 1072, 1275, 1677, 1732, 2100
AluI	AGCT	8 cut(s)	343, 874, 1007, 1072, 1275, 1677, 1732, 2100
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	239, 1844, 2004
Ama87I	CYCGRG	1 cut(s)	1788
Aor13HI	TCCGGA	1 cut(s)	2145
AoxI	GGCC	8 cut(s)	408, 462, 725, 816, 1155, 1343, 1701, 1977
ApeKI	GCWGC	6 cut(s)	204, 394, 1373, 1642, 1835, 1877
ApoI	RAATTY	3 cut(s)	959, 1612, 2119
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AseI	ATTAAT	1 cut(s)	1430
AsiGI	ACCGGT	1 cut(s)	1028
Asp700I	GAANNNNTTC	3 cut(s)	1676, 1802, 2070
AspLEI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
AspS9I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
AsuC2I	CCSGG	4 cut(s)	433, 1751, 1789, 1790
AsuHPI	GGTGA	6 cut(s)	68, 1043, 1342, 1363, 1480, 2178
AsuII	TTCGAA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	1788
AvaII	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
BalI	TGGCCA	3 cut(s)	464, 1703, 1979
BanI	GGYRCC	2 cut(s)	1296, 1826
BanII	GRGCYC	2 cut(s)	345, 354
BauI	CACGAG	1 cut(s)	466
BbrPI	CACGTG	2 cut(s)	425, 445
BbsI	GAAGAC	2 cut(s)	1863, 2073
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	316
BbvI	GCAGC	6 cut(s)	216, 381, 1385, 1654, 1822, 1864
BccI	CCATC	6 cut(s)	290, 344, 369, 1202, 1223, 1459
BceAI	ACGGC	2 cut(s)	1222, 1540
BciT130I	CCWGG	3 cut(s)	461, 851, 1824
BclI	TGATCA	2 cut(s)	993, 1767
BcnI	CCSGG	4 cut(s)	433, 1751, 1789, 1790
BcuI	ACTAGT	1 cut(s)	1357
BfaI	CTAG	6 cut(s)	875, 1008, 1358, 1692, 1839, 2097
BfmI	CTRYAG	1 cut(s)	832
BfoI	RGCGCY	1 cut(s)	1300
BfuAI	ACCTGC	1 cut(s)	1925
Bme1390I	CCNGG	7 cut(s)	433, 461, 851, 1751, 1789, 1790, 1824
Bme18I	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
BmeT110I	CYCGRG	1 cut(s)	1788
BmgBI	CACGTC	1 cut(s)	1045
BmgT120I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
BmiI	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1799, 1821, 1828
BmrFI	CCNGG	7 cut(s)	433, 461, 851, 1751, 1789, 1790, 1824
BmrI	ACTGGG	1 cut(s)	1417
BmsI	GCATC	4 cut(s)	504, 1090, 1117, 1708
BmuI	ACTGGG	1 cut(s)	1417
BpiI	GAAGAC	2 cut(s)	1863, 2073
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	560
BpuMI	CCSGG	4 cut(s)	433, 1751, 1789, 1790
BsaAI	YACGTR	2 cut(s)	425, 445
BsaHI	GRCGYC	3 cut(s)	762, 978, 1297
BsaJI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1788, 1960
BsaWI	WCCGGW	3 cut(s)	491, 1028, 2145
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1794, 1872, 1873, 1900, 2145
Bse118I	RCCGGY	2 cut(s)	1028, 2176
Bse1I	ACTGG	2 cut(s)	1412, 1774
BseAI	TCCGGA	1 cut(s)	2145
BseBI	CCWGG	3 cut(s)	461, 851, 1824
BseDI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1788, 1960
BseGI	GGATG	7 cut(s)	282, 585, 1105, 1132, 1223, 1600, 1723
BseLI	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1794, 1872, 1873, 1900, 2145
BseMII	CTCAG	4 cut(s)	144, 173, 330, 1392
BseNI	ACTGG	2 cut(s)	1412, 1774
BseRI	GAGGAG	5 cut(s)	50, 280, 671, 682, 2142
BseXI	GCAGC	6 cut(s)	216, 381, 1385, 1654, 1822, 1864
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	6 cut(s)	89, 299, 326, 440, 542, 594
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	8 cut(s)	410, 464, 727, 818, 1157, 1345, 1703, 1979
BshNI	GGYRCC	2 cut(s)	1296, 1826
BshTI	ACCGGT	1 cut(s)	1028
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	1788
BsiSI	CCGG	7 cut(s)	432, 492, 1029, 1751, 1789, 2146, 2177
BsiWI	CGTACG	1 cut(s)	1239
BslFI	GGGAC	2 cut(s)	536, 1055
BslI	CCNNNNNNNGG	9 cut(s)	546, 734, 1028, 1319, 1794, 1872, 1873, 1900, 2145
BsmFI	GGGAC	2 cut(s)	536, 1055
BsnI	GGCC	8 cut(s)	410, 464, 727, 818, 1157, 1345, 1703, 1979
BsoBI	CYCGRG	1 cut(s)	1788
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	345, 354
Bsp13I	TCCGGA	1 cut(s)	2145
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp19I	CCATGG	2 cut(s)	522, 1960
BspANI	GGCC	8 cut(s)	410, 464, 727, 818, 1157, 1345, 1703, 1979
BspCNI	CTCAG	4 cut(s)	143, 172, 329, 1391
BspEI	TCCGGA	1 cut(s)	2145
BspFNI	CGCG	6 cut(s)	89, 299, 326, 440, 542, 594
BspHI	TCATGA	1 cut(s)	1561
BspLI	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1799, 1821, 1828
BspMI	ACCTGC	1 cut(s)	1925
BspPI	GGATC	3 cut(s)	239, 1844, 2004
BspQI	GCTCTTC	2 cut(s)	308, 342
BspT104I	TTCGAA	1 cut(s)	560
BspT107I	GGYRCC	2 cut(s)	1296, 1826
BsrBI	CCGCTC	4 cut(s)	156, 986, 1165, 1927
BsrFI	RCCGGY	2 cut(s)	1028, 2176
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	2 cut(s)	1412, 1774
BssAI	RCCGGY	2 cut(s)	1028, 2176
BssECI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1788, 1960
BssNI	GRCGYC	3 cut(s)	762, 978, 1297
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	3 cut(s)	522, 1667, 1960
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	3 cut(s)	461, 851, 1824
Bst6I	CTCTTC	3 cut(s)	68, 308, 342
BstACI	GRCGYC	3 cut(s)	762, 978, 1297
BstAPI	GCANNNNNTGC	1 cut(s)	1159
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	2 cut(s)	425, 445
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	847, 988, 1132, 1155
BstDEI	CTNAG	7 cut(s)	130, 159, 316, 937, 1378, 1451, 2202
BstDSI	CCRYGG	5 cut(s)	522, 921, 1095, 1522, 1960
BstEII	GGTNACC	2 cut(s)	74, 1031
BstF5I	GGATG	7 cut(s)	282, 585, 1105, 1132, 1223, 1600, 1723
BstFNI	CGCG	6 cut(s)	89, 299, 326, 440, 542, 594
BstH2I	RGCGCY	1 cut(s)	1300
BstHHI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	8 cut(s)	140, 349, 358, 614, 1078, 1159, 1171, 1835
BstNI	CCWGG	3 cut(s)	461, 851, 1824
BstPI	GGTNACC	2 cut(s)	74, 1031
BstSCI	CCNGG	7 cut(s)	431, 459, 849, 1749, 1787, 1788, 1822
BstSFI	CTRYAG	1 cut(s)	832
BstUI	CGCG	6 cut(s)	89, 299, 326, 440, 542, 594
BstV1I	GCAGC	6 cut(s)	216, 381, 1385, 1654, 1822, 1864
BstV2I	GAAGAC	2 cut(s)	1863, 2073
BstXI	CCANNNNNNTGG	1 cut(s)	1961
BsuRI	GGCC	8 cut(s)	410, 464, 727, 818, 1157, 1345, 1703, 1979
BtgI	CCRYGG	5 cut(s)	522, 921, 1095, 1522, 1960
BtgZI	GCGATG	1 cut(s)	403
BtrI	CACGTC	1 cut(s)	1045
BtsCI	GGATG	7 cut(s)	282, 585, 1105, 1132, 1223, 1600, 1723
BtsI	GCAGTG	1 cut(s)	1830
BtsIMutI	CAGTG	3 cut(s)	692, 705, 1830
BveI	ACCTGC	1 cut(s)	1925
Cac8I	GCNNGC	4 cut(s)	847, 988, 1132, 1155
CciI	TCATGA	1 cut(s)	1561
CfoI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
Cfr10I	RCCGGY	2 cut(s)	1028, 2176
Cfr13I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
Cfr9I	CCCGGG	1 cut(s)	1788
CseI	GACGC	3 cut(s)	34, 770, 986
Csp6I	GTAC	6 cut(s)	482, 652, 683, 1051, 1108, 1240
CspAI	ACCGGT	1 cut(s)	1028
CviQI	GTAC	6 cut(s)	482, 652, 683, 1051, 1108, 1240
DdeI	CTNAG	7 cut(s)	130, 159, 316, 937, 1378, 1451, 2202
DinI	GGCGCC	1 cut(s)	1298
EaeI	YGGCCR	3 cut(s)	462, 1701, 1977
Eam1104I	CTCTTC	3 cut(s)	68, 308, 342
EarI	CTCTTC	3 cut(s)	68, 308, 342
EciI	GGCGGA	3 cut(s)	623, 832, 1769
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	3 cut(s)	522, 1667, 1960
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	345, 354
Eco32I	GATATC	1 cut(s)	1288
Eco47I	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	3 cut(s)	4, 1023, 1875
Eco72I	CACGTG	2 cut(s)	425, 445
Eco88I	CYCGRG	1 cut(s)	1788
Eco91I	GGTNACC	2 cut(s)	74, 1031
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	2 cut(s)	74, 1031
EcoRII	CCWGG	3 cut(s)	459, 849, 1822
EcoRV	GATATC	1 cut(s)	1288
EcoT14I	CCWWGG	3 cut(s)	522, 1667, 1960
EcoT22I	ATGCAT	1 cut(s)	1105
EcoT38I	GRGCYC	2 cut(s)	345, 354
EgeI	GGCGCC	1 cut(s)	1298
EheI	GGCGCC	1 cut(s)	1298
ErhI	CCWWGG	3 cut(s)	522, 1667, 1960
FaqI	GGGAC	2 cut(s)	536, 1055
FauI	CCCGC	6 cut(s)	399, 788, 979, 1123, 1179, 1274
FbaI	TGATCA	2 cut(s)	993, 1767
FblI	GTMKAC	1 cut(s)	1599
FokI	GGATG	7 cut(s)	269, 572, 1112, 1139, 1210, 1607, 1730
FriOI	GRGCYC	2 cut(s)	345, 354
FspBI	CTAG	6 cut(s)	875, 1008, 1358, 1692, 1839, 2097
GlaI	GCGC	7 cut(s)	90, 142, 300, 327, 441, 593, 1298
HaeII	RGCGCY	1 cut(s)	1300
HaeIII	GGCC	8 cut(s)	410, 464, 727, 818, 1157, 1345, 1703, 1979
HapII	CCGG	7 cut(s)	432, 492, 1029, 1751, 1789, 2146, 2177
HgaI	GACGC	3 cut(s)	34, 770, 986
HhaI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
Hin1I	GRCGYC	3 cut(s)	762, 978, 1297
Hin6I	GCGC	7 cut(s)	89, 141, 299, 326, 440, 592, 1297
HinP1I	GCGC	7 cut(s)	89, 141, 299, 326, 440, 592, 1297
HincII	GTYRAC	3 cut(s)	457, 741, 754
HindII	GTYRAC	3 cut(s)	457, 741, 754
HindIII	AAGCTT	1 cut(s)	1675
HinfI	GANTC	5 cut(s)	880, 1309, 1630, 1661, 2149
HpaII	CCGG	7 cut(s)	432, 492, 1029, 1751, 1789, 2146, 2177
HphI	GGTGA	6 cut(s)	68, 1043, 1342, 1363, 1480, 2178
Hpy166II	GTNNAC	7 cut(s)	457, 712, 741, 754, 868, 1405, 1600
Hpy8I	GTNNAC	7 cut(s)	457, 712, 741, 754, 868, 1405, 1600
Hpy99I	CGWCG	5 cut(s)	50, 637, 980, 1069, 2089
HpyAV	CCTTC	6 cut(s)	119, 694, 728, 808, 899, 1708
HpyCH4IV	ACGT	5 cut(s)	424, 444, 1044, 1242, 1545
HpyCH4V	TGCA	4 cut(s)	120, 1103, 1153, 1721
HpyF10VI	GCNNNNNNNGC	8 cut(s)	140, 349, 358, 614, 1078, 1159, 1171, 1835
HpyF3I	CTNAG	7 cut(s)	130, 159, 316, 937, 1378, 1451, 2202
HpySE526I	ACGT	5 cut(s)	424, 444, 1044, 1242, 1545
Hsp92I	GRCGYC	3 cut(s)	762, 978, 1297
HspAI	GCGC	7 cut(s)	89, 141, 299, 326, 440, 592, 1297
KasI	GGCGCC	1 cut(s)	1296
KflI	GGGWCCC	1 cut(s)	550
Kpn2I	TCCGGA	1 cut(s)	2145
Ksp22I	TGATCA	2 cut(s)	993, 1767
LguI	GCTCTTC	2 cut(s)	308, 342
LmnI	GCTCC	2 cut(s)	333, 1069
Lsp1109I	GCAGC	6 cut(s)	216, 381, 1385, 1654, 1822, 1864
LweI	GCATC	4 cut(s)	504, 1090, 1117, 1708
MaeI	CTAG	6 cut(s)	875, 1008, 1358, 1692, 1839, 2097
MaeII	ACGT	5 cut(s)	424, 444, 1044, 1242, 1545
MaeIII	GTNAC	9 cut(s)	74, 932, 1016, 1031, 1190, 1351, 1385, 1903, 2030
MbiI	CCGCTC	4 cut(s)	156, 986, 1165, 1927
MboII	GAAGA	7 cut(s)	10, 55, 295, 359, 1868, 1979, 2078
MhlI	GDGCHC	2 cut(s)	345, 354
MlsI	TGGCCA	3 cut(s)	464, 1703, 1979
MluCI	AATT	6 cut(s)	952, 959, 1612, 1736, 2004, 2119
MluNI	TGGCCA	3 cut(s)	464, 1703, 1979
Mly113I	GGCGCC	1 cut(s)	1297
MlyI	GAGTC	3 cut(s)	1318, 1670, 2143
MmeI	TCCRAC	5 cut(s)	28, 246, 1047, 1426, 1531
Mox20I	TGGCCA	3 cut(s)	464, 1703, 1979
Mph1103I	ATGCAT	1 cut(s)	1105
MroI	TCCGGA	1 cut(s)	2145
MroXI	GAANNNNTTC	3 cut(s)	1676, 1802, 2070
MscI	TGGCCA	3 cut(s)	464, 1703, 1979
MseI	TTAA	5 cut(s)	678, 1176, 1430, 1623, 1728
MslI	CAYNNNNRTG	1 cut(s)	1463
Msp20I	TGGCCA	3 cut(s)	464, 1703, 1979
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	7 cut(s)	432, 492, 1029, 1751, 1789, 2146, 2177
MspR9I	CCNGG	7 cut(s)	433, 461, 851, 1751, 1789, 1790, 1824
MvaI	CCWGG	3 cut(s)	461, 851, 1824
MvnI	CGCG	6 cut(s)	89, 299, 326, 440, 542, 594
MwoI	GCNNNNNNNGC	8 cut(s)	140, 349, 358, 614, 1078, 1159, 1171, 1835
NarI	GGCGCC	1 cut(s)	1297
NciI	CCSGG	4 cut(s)	433, 1751, 1789, 1790
NcoI	CCATGG	2 cut(s)	522, 1960
NlaIV	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1799, 1821, 1828
NmuCI	GTSAC	6 cut(s)	74, 932, 1016, 1031, 1351, 1903
NsiI	ATGCAT	1 cut(s)	1105
NspV	TTCGAA	1 cut(s)	560
PagI	TCATGA	1 cut(s)	1561
PaqCI	CACCTGC	1 cut(s)	1925
PceI	AGGCCT	1 cut(s)	410
PciSI	GCTCTTC	2 cut(s)	308, 342
PcsI	WCGNNNNNNNCGW	4 cut(s)	351, 450, 651, 1310
PdmI	GAANNNNTTC	3 cut(s)	1676, 1802, 2070
PfeI	GAWTC	2 cut(s)	880, 1630
Pfl23II	CGTACG	1 cut(s)	1239
PflFI	GACNNNGTC	1 cut(s)	2089
PfoI	TCCNGGA	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	1028
PleI	GAGTC	3 cut(s)	1317, 1669, 2143
PluTI	GGCGCC	1 cut(s)	1300
PmaCI	CACGTG	2 cut(s)	425, 445
PmlI	CACGTG	2 cut(s)	425, 445
PpsI	GAGTC	3 cut(s)	1317, 1669, 2143
Ppu21I	YACGTR	2 cut(s)	425, 445
PpuMI	RGGWCCY	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	1430
Psp124BI	GAGCTC	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	1545
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	3 cut(s)	459, 849, 1822
PspCI	CACGTG	2 cut(s)	425, 445
PspEI	GGTNACC	2 cut(s)	74, 1031
PspGI	CCWGG	3 cut(s)	459, 849, 1822
PspLI	CGTACG	1 cut(s)	1239
PspN4I	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1799, 1821, 1828
PspPI	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
PspPPI	RGGWCCY	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	2089
RsaI	GTAC	6 cut(s)	483, 653, 684, 1052, 1109, 1241
RsaNI	GTAC	6 cut(s)	482, 652, 683, 1051, 1108, 1240
RseI	CAYNNNNRTG	1 cut(s)	1463
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	2 cut(s)	308, 342
SaqAI	TTAA	5 cut(s)	678, 1176, 1430, 1623, 1728
Sau96I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
SchI	GAGTC	3 cut(s)	1318, 1670, 2143
ScrFI	CCNGG	7 cut(s)	433, 461, 851, 1751, 1789, 1790, 1824
SduI	GDGCHC	2 cut(s)	345, 354
SfaNI	GCATC	4 cut(s)	504, 1090, 1117, 1708
SfcI	CTRYAG	1 cut(s)	832
SfoI	GGCGCC	1 cut(s)	1298
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
SmaI	CCCGGG	1 cut(s)	1790
SmiMI	CAYNNNNRTG	1 cut(s)	1463
SpeI	ACTAGT	1 cut(s)	1357
Sse9I	AATT	6 cut(s)	952, 959, 1612, 1736, 2004, 2119
SseBI	AGGCCT	1 cut(s)	410
SspDI	GGCGCC	1 cut(s)	1296
SspMI	CTAG	6 cut(s)	875, 1008, 1358, 1692, 1839, 2097
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	7 cut(s)	431, 459, 849, 1749, 1787, 1788, 1822
StyI	CCWWGG	3 cut(s)	522, 1667, 1960
TaiI	ACGT	5 cut(s)	427, 447, 1047, 1245, 1548
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	6 cut(s)	952, 959, 1612, 1736, 2004, 2119
TatI	WGTACW	1 cut(s)	1050
TauI	GCSGC	5 cut(s)	539, 542, 597, 821, 1165
TfiI	GAWTC	2 cut(s)	880, 1630
Tru1I	TTAA	5 cut(s)	678, 1176, 1430, 1623, 1728
Tru9I	TTAA	5 cut(s)	678, 1176, 1430, 1623, 1728
TscAI	CASTG	3 cut(s)	692, 712, 1837
TseFI	GTSAC	6 cut(s)	74, 932, 1016, 1031, 1351, 1903
TseI	GCWGC	6 cut(s)	204, 394, 1373, 1642, 1835, 1877
Tsp45I	GTSAC	6 cut(s)	74, 932, 1016, 1031, 1351, 1903
TspDTI	ATGAA	5 cut(s)	953, 1508, 1550, 1571, 2036
TspGWI	ACGGA	9 cut(s)	403, 469, 1004, 1053, 1112, 1319, 1340, 1440, 1724
TspMI	CCCGGG	1 cut(s)	1788
TspRI	CASTG	3 cut(s)	692, 712, 1837
Tth111I	GACNNNGTC	1 cut(s)	2089
VpaK11BI	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
VspI	ATTAAT	1 cut(s)	1430
XapI	RAATTY	3 cut(s)	959, 1612, 2119
XmaI	CCCGGG	1 cut(s)	1788
XmiI	GTMKAC	1 cut(s)	1599
XmnI	GAANNNNTTC	3 cut(s)	1676, 1802, 2070
XspI	CTAG	6 cut(s)	875, 1008, 1358, 1692, 1839, 2097
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.