Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

17361113 .. 17368624

Gene Structure 7512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2217 bp

ATGGAAACCCGAAACTTCTTCAGCCTTTTCTTTCTTTCGCTCTGCATCGGATTTGTCCTCCTCTTCACTTGGGGTCACCTCCCTTACGCGCCTCCCTACACGACTGACCTTCTCGACTGCACCACCAACTCAGCATGGTGCGCCTCCAAAAACTGCTCTCAGTCCAAACCGTCCAGCAACTTCCTCAAAAACAAAAACCACCGCAGCCACAACCACGCCTTCGACATTCCCCACCACCCTCTCGATCCCCTCACAGTCCAAGAACTCAACAAAATCCGAACCATCCTCTCCTCCCACGCGCTCTTCAAGTCGTCCTCAGCCTACGCGCTAAACTCCATCGAGCTCGAAGAGCCCGACAAGCCTTTCGTCCTCCGATGGAAAAAGGGCGACCCACTGCTACCCAGAAAGGCCTCCGTCATCGCACGTGCGGCCGGGAAGGCGCACGTGCTGACCGTTGACCTGGCCACGAGCGAGGTGTCCGTACAGCAGACCGGAACCCACTTCGGCTATCCGATGCTGACCGTGGAGGAAATAACCGTCGCGATCTGGGTCCCACTTTCGAACGCCAAGTTCAACCGCACGATCATCCAGCGCGGCGTTGATCTGGCGGACCTTGCGTGTTTGCCGATCTCGTCGGGGTGGTTCGATGAGTACGAGGAGAACAGGAGGAGGTTGATTAAGGTACAGTGCTTCTCCACGAAGGACACTGTGAACTTTTACATGAGGCCAATCGAAGGGTTGACCGTTCTCGTTGACTTGGACGGCGAACAAGTGGTGGAGATTTCCGACAAGGGCGGGAACATTCCGATACCGAAGGCCGCCAACACAGACTATAGATACTCCGTCAGCCAGGAGGTCAGTCGAGTGATCAAGCTAGTGAATCCCATTTCCATTGAGCAACCAGAAGGTCCAAGTTTTACCGTGGAGGACGGTCACTTAGTAAAATGGGCAAATTGGGAATTTCATGTAAAAGCCGACGCCAGAGCCGGCGTGATCATATCTCAAGCTAGGGTCCGTGACCCAGATACCGGTGACCAAAGGGACGTGATGTACAAAGGGTTTCCGTCGGAGCTGTTTGTGCCTTACATGGACCCCACGGATGCATGGTACTTCAAGACTTATATGGATGCGGGCGAATACGGGTTCGGGTTGCAGGCCATGCCGCTCGACCCGCTTAATGATTGCCCCCGTAACGCCTACTACATTGATGGTGTGTTTGTCACATCCGATGGAACGCCGTACGTCCGATCAAACATGATCTGCGTGTTCGAGAGCTATGGCGGGGATATCGGGTGGCGCCACACGGAGAGTCCGATAACGGGGATGGAGGTGAGAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGAATGGCAGCGTCAGTTGGTAACTATGACTATATCGTGGACTGGGAGTTCCAAACAGACGGATTAATCAGAGTAAAGGTTGGACTTAGTGGCATTTTGATGGTGAAAGGCACACCCTATGAGAACATGAACCAAGTCTTTGACCTAGACAATCTCCACGGCACACTGTTATCTGAAAATGTTGTTGGAGTGACTCATGACCATTACATAACATTTCATCTTGATATGGATGTAGACGGTTCTGAAAATTCCTTTGTTAAAGTGAATCTCCAAAGGCAGAAAACCTCTCCTGATGAGTCCCCAAGGAAAAGCTTCTTGAAAGCAACTAGAACTGTGGCCAAAACGGAGAAGGATGCACAAGTCAAGCTAAAACTCTATGACCCGTCGGAGTTCCATGTGATCAACCCGTCGAAACAGACCCGGGTTGGGAACCCTGTCGGGTATAAGGTGGTTCCTGGTGCCACTGCTGCTAGTTTGCTTGATCCTGAAGACCCTCCCCAAAAGAGGGCTGCTTTTACGAATAACCAAATCTGGGTCACTCAATACAATCGGAGTGAGCAGTGGGCAGGTGGGTTGTTTGCTTACCAAAGCCATGGAGAAGATACTTTGGCCATGTGGTCTGACAAGGATCGAGAAATTGAGAATAAAGACATTGTGGTTTGGTACACATTAGGGTTTCATCACATACCATGCCAAGAAGACTTTCCTATAATGCCGACGGTGTCATCTAGCTTTGATTTGAAGCCTGTGAATTTCTTTCAGAGCAACCCCATACTCCGGACTCCGCCTAACGTTGAGAGTGATTTGCCTGTTTGCTCACCTGTTGCTTCAACTTCGGGGATTCAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

738

Amino Acids

83.07

Weight (kDa)

5.66

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	79 - 160	3e-23	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	171 - 271	1.3e-22	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	297 - 713	1.1e-141	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1922
Acc36I	ACCTGC	1 cut(s)	1922
AccB1I	GGYRCC	2 cut(s)	1296, 1823
AccBSI	CCGCTC	1 cut(s)	1165
AccI	GTMKAC	1 cut(s)	1599
AccII	CGCG	5 cut(s)	89, 299, 326, 542, 594
AccIII	TCCGGA	1 cut(s)	2142
AclI	AACGTT	1 cut(s)	2157
AclWI	GGATC	3 cut(s)	239, 1841, 2001
AcoI	YGGCCR	4 cut(s)	429, 462, 1701, 1974
AcsI	RAATTY	3 cut(s)	959, 1612, 2116
AcuI	CTGAAG	2 cut(s)	4, 1872
AcvI	CACGTG	2 cut(s)	425, 445
AcyI	GRCGYC	2 cut(s)	978, 1297
AfaI	GTAC	7 cut(s)	483, 653, 684, 1052, 1109, 1241, 2030
AfiI	CCNNNNNNNGG	8 cut(s)	734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	7 cut(s)	307, 574, 1114, 1684, 2107, 2196, 2210
AhlI	ACTAGT	1 cut(s)	1357
AjiI	CACGTC	1 cut(s)	1045
AjnI	CCWGG	3 cut(s)	459, 849, 1819
AjuI	GAANNNNNNNTTGG	4 cut(s)	1533, 1565, 2052, 2084
AloI	GAACNNNNNNTCC	2 cut(s)	1397, 1429
AluBI	AGCT	8 cut(s)	343, 874, 1007, 1072, 1275, 1677, 1732, 2097
AluI	AGCT	8 cut(s)	343, 874, 1007, 1072, 1275, 1677, 1732, 2097
Alw21I	GWGCWC	1 cut(s)	345
AlwI	GGATC	3 cut(s)	239, 1841, 2001
Ama87I	CYCGRG	1 cut(s)	1785
Aor13HI	TCCGGA	1 cut(s)	2142
AoxI	GGCC	9 cut(s)	408, 429, 462, 725, 816, 1155, 1343, 1701, 1974
ApeKI	GCWGC	4 cut(s)	204, 1373, 1832, 1874
ApoI	RAATTY	3 cut(s)	959, 1612, 2116
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AseI	ATTAAT	1 cut(s)	1430
AsiGI	ACCGGT	1 cut(s)	1028
Asp700I	GAANNNNTTC	2 cut(s)	1676, 2067
AspLEI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
AspS9I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
AsuC2I	CCSGG	3 cut(s)	433, 1786, 1787
AsuHPI	GGTGA	6 cut(s)	68, 1043, 1342, 1363, 1480, 2175
AsuII	TTCGAA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	1785
AvaII	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
BalI	TGGCCA	3 cut(s)	464, 1703, 1976
BanI	GGYRCC	2 cut(s)	1296, 1823
BanII	GRGCYC	2 cut(s)	345, 354
BauI	CACGAG	1 cut(s)	466
BbrPI	CACGTG	2 cut(s)	425, 445
BbsI	GAAGAC	2 cut(s)	1860, 2070
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	316
BbvI	GCAGC	4 cut(s)	216, 1385, 1819, 1861
BccI	CCATC	7 cut(s)	290, 344, 369, 1202, 1223, 1318, 1459
BceAI	ACGGC	3 cut(s)	778, 1222, 1540
BciT130I	CCWGG	3 cut(s)	461, 851, 1821
BclI	TGATCA	3 cut(s)	867, 993, 1764
BcnI	CCSGG	3 cut(s)	433, 1786, 1787
BcuI	ACTAGT	1 cut(s)	1357
BfaI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
BfmI	CTRYAG	1 cut(s)	832
BfoI	RGCGCY	1 cut(s)	1300
BfuAI	ACCTGC	1 cut(s)	1922
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	8 cut(s)	205, 429, 595, 819, 1163, 1374, 1833, 1875
BlsI	GCNGC	8 cut(s)	206, 430, 596, 820, 1164, 1375, 1834, 1876
Bme1390I	CCNGG	6 cut(s)	433, 461, 851, 1786, 1787, 1821
Bme18I	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
BmeT110I	CYCGRG	1 cut(s)	1785
BmgBI	CACGTC	1 cut(s)	1045
BmgT120I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
BmiI	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
BmrFI	CCNGG	6 cut(s)	433, 461, 851, 1786, 1787, 1821
BmrI	ACTGGG	1 cut(s)	1417
BmsI	GCATC	5 cut(s)	54, 504, 1090, 1117, 1708
BmuI	ACTGGG	1 cut(s)	1417
BpiI	GAAGAC	2 cut(s)	1860, 2070
Bpu10I	CCTNAGC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	1 cut(s)	987
BpuMI	CCSGG	3 cut(s)	433, 1786, 1787
BsaAI	YACGTR	2 cut(s)	425, 445
BsaHI	GRCGYC	2 cut(s)	978, 1297
BsaJI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1785, 1957
BsaWI	WCCGGW	3 cut(s)	491, 1028, 2142
Bsc4I	CCNNNNNNNGG	8 cut(s)	734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
Bse118I	RCCGGY	2 cut(s)	986, 1028
Bse1I	ACTGG	1 cut(s)	1412
BseAI	TCCGGA	1 cut(s)	2142
BseBI	CCWGG	3 cut(s)	461, 851, 1821
BseDI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1785, 1957
BseGI	GGATG	8 cut(s)	282, 585, 1105, 1132, 1223, 1329, 1600, 1723
BseLI	CCNNNNNNNGG	8 cut(s)	734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
BseMII	CTCAG	3 cut(s)	144, 173, 330
BseNI	ACTGG	1 cut(s)	1412
BseRI	GAGGAG	4 cut(s)	50, 280, 671, 682
BseX3I	CGGCCG	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	216, 1385, 1819, 1861
BsgI	GTGCAG	1 cut(s)	103
Bsh1236I	CGCG	5 cut(s)	89, 299, 326, 542, 594
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	9 cut(s)	410, 431, 464, 727, 818, 1157, 1345, 1703, 1976
BshNI	GGYRCC	2 cut(s)	1296, 1823
BshTI	ACCGGT	1 cut(s)	1028
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	1785
BsiSI	CCGG	6 cut(s)	432, 492, 987, 1029, 1786, 2143
BsiWI	CGTACG	1 cut(s)	1239
BslFI	GGGAC	3 cut(s)	536, 1055, 1648
BslI	CCNNNNNNNGG	8 cut(s)	734, 1028, 1319, 1791, 1869, 1870, 1897, 2142
BsmFI	GGGAC	3 cut(s)	536, 1055, 1648
BsnI	GGCC	9 cut(s)	410, 431, 464, 727, 818, 1157, 1345, 1703, 1976
BsoBI	CYCGRG	1 cut(s)	1785
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	345, 354
Bsp13I	TCCGGA	1 cut(s)	2142
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp19I	CCATGG	1 cut(s)	1957
Bsp68I	TCGCGA	1 cut(s)	542
BspANI	GGCC	9 cut(s)	410, 431, 464, 727, 818, 1157, 1345, 1703, 1976
BspCNI	CTCAG	3 cut(s)	143, 172, 329
BspEI	TCCGGA	1 cut(s)	2142
BspFNI	CGCG	5 cut(s)	89, 299, 326, 542, 594
BspHI	TCATGA	1 cut(s)	1561
BspLI	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
BspMI	ACCTGC	1 cut(s)	1922
BspPI	GGATC	3 cut(s)	239, 1841, 2001
BspQI	GCTCTTC	2 cut(s)	308, 342
BspT104I	TTCGAA	1 cut(s)	560
BspT107I	GGYRCC	2 cut(s)	1296, 1823
BsrBI	CCGCTC	1 cut(s)	1165
BsrFI	RCCGGY	2 cut(s)	986, 1028
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	1 cut(s)	1412
BssAI	RCCGGY	2 cut(s)	986, 1028
BssECI	CCNNGG	7 cut(s)	522, 921, 1095, 1522, 1667, 1785, 1957
BssNI	GRCGYC	2 cut(s)	978, 1297
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	2 cut(s)	1667, 1957
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	3 cut(s)	461, 851, 1821
Bst6I	CTCTTC	3 cut(s)	68, 308, 342
BstACI	GRCGYC	2 cut(s)	978, 1297
BstAPI	GCANNNNNTGC	1 cut(s)	1159
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	2 cut(s)	425, 445
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	988, 1132, 1155
BstDEI	CTNAG	5 cut(s)	130, 159, 316, 937, 1451
BstDSI	CCRYGG	5 cut(s)	522, 921, 1095, 1522, 1957
BstEII	GGTNACC	2 cut(s)	74, 1031
BstF5I	GGATG	8 cut(s)	282, 585, 1105, 1132, 1223, 1329, 1600, 1723
BstFNI	CGCG	5 cut(s)	89, 299, 326, 542, 594
BstH2I	RGCGCY	1 cut(s)	1300
BstHHI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
BstMCI	CGRYCG	1 cut(s)	432
BstNI	CCWGG	3 cut(s)	461, 851, 1821
BstPI	GGTNACC	2 cut(s)	74, 1031
BstSCI	CCNGG	6 cut(s)	431, 459, 849, 1784, 1785, 1819
BstSFI	CTRYAG	1 cut(s)	832
BstUI	CGCG	5 cut(s)	89, 299, 326, 542, 594
BstV1I	GCAGC	4 cut(s)	216, 1385, 1819, 1861
BstV2I	GAAGAC	2 cut(s)	1860, 2070
BstXI	CCANNNNNNTGG	1 cut(s)	1958
BstZI	CGGCCG	1 cut(s)	429
BsuRI	GGCC	9 cut(s)	410, 431, 464, 727, 818, 1157, 1345, 1703, 1976
BtgI	CCRYGG	5 cut(s)	522, 921, 1095, 1522, 1957
BtgZI	GCGATG	1 cut(s)	403
BtrI	CACGTC	1 cut(s)	1045
BtsCI	GGATG	8 cut(s)	282, 585, 1105, 1132, 1223, 1329, 1600, 1723
BtsI	GCAGTG	3 cut(s)	392, 1827, 1931
BtsIMutI	CAGTG	6 cut(s)	392, 692, 705, 1529, 1827, 1931
BtuMI	TCGCGA	1 cut(s)	542
BveI	ACCTGC	1 cut(s)	1922
Cac8I	GCNNGC	3 cut(s)	988, 1132, 1155
CciI	TCATGA	1 cut(s)	1561
CfoI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
Cfr10I	RCCGGY	2 cut(s)	986, 1028
Cfr13I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
Cfr9I	CCCGGG	1 cut(s)	1785
CseI	GACGC	2 cut(s)	986, 1365
Csp6I	GTAC	7 cut(s)	482, 652, 683, 1051, 1108, 1240, 2029
CspAI	ACCGGT	1 cut(s)	1028
CviQI	GTAC	7 cut(s)	482, 652, 683, 1051, 1108, 1240, 2029
DdeI	CTNAG	5 cut(s)	130, 159, 316, 937, 1451
DinI	GGCGCC	1 cut(s)	1298
EaeI	YGGCCR	4 cut(s)	429, 462, 1701, 1974
EagI	CGGCCG	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	68, 308, 342
EarI	CTCTTC	3 cut(s)	68, 308, 342
EciI	GGCGGA	2 cut(s)	623, 2139
Ecl136II	GAGCTC	1 cut(s)	343
EclXI	CGGCCG	1 cut(s)	429
Eco130I	CCWWGG	2 cut(s)	1667, 1957
Eco147I	AGGCCT	1 cut(s)	410
Eco24I	GRGCYC	2 cut(s)	345, 354
Eco32I	GATATC	1 cut(s)	1288
Eco47I	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
Eco52I	CGGCCG	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	4, 1872
Eco72I	CACGTG	2 cut(s)	425, 445
Eco88I	CYCGRG	1 cut(s)	1785
Eco91I	GGTNACC	2 cut(s)	74, 1031
EcoICRI	GAGCTC	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	550
EcoO65I	GGTNACC	2 cut(s)	74, 1031
EcoRII	CCWGG	3 cut(s)	459, 849, 1819
EcoRV	GATATC	1 cut(s)	1288
EcoT14I	CCWWGG	2 cut(s)	1667, 1957
EcoT22I	ATGCAT	1 cut(s)	1105
EcoT38I	GRGCYC	2 cut(s)	345, 354
EgeI	GGCGCC	1 cut(s)	1298
EheI	GGCGCC	1 cut(s)	1298
ErhI	CCWWGG	2 cut(s)	1667, 1957
FaqI	GGGAC	3 cut(s)	536, 1055, 1648
FauI	CCCGC	4 cut(s)	788, 1123, 1179, 1274
FbaI	TGATCA	3 cut(s)	867, 993, 1764
FblI	GTMKAC	1 cut(s)	1599
Fnu4HI	GCNGC	8 cut(s)	205, 429, 595, 819, 1163, 1374, 1833, 1875
FokI	GGATG	8 cut(s)	269, 572, 1112, 1139, 1210, 1336, 1607, 1730
FriOI	GRGCYC	2 cut(s)	345, 354
Fsp4HI	GCNGC	8 cut(s)	205, 429, 595, 819, 1163, 1374, 1833, 1875
FspBI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
GlaI	GCGC	7 cut(s)	90, 142, 300, 327, 441, 593, 1298
GluI	GCNGC	8 cut(s)	205, 429, 595, 819, 1163, 1374, 1833, 1875
HaeII	RGCGCY	1 cut(s)	1300
HaeIII	GGCC	9 cut(s)	410, 431, 464, 727, 818, 1157, 1345, 1703, 1976
HapII	CCGG	6 cut(s)	432, 492, 987, 1029, 1786, 2143
HgaI	GACGC	2 cut(s)	986, 1365
HhaI	GCGC	7 cut(s)	91, 143, 301, 328, 442, 594, 1299
Hin1I	GRCGYC	2 cut(s)	978, 1297
Hin6I	GCGC	7 cut(s)	89, 141, 299, 326, 440, 592, 1297
HinP1I	GCGC	7 cut(s)	89, 141, 299, 326, 440, 592, 1297
HincII	GTYRAC	3 cut(s)	457, 741, 754
HindII	GTYRAC	3 cut(s)	457, 741, 754
HindIII	AAGCTT	1 cut(s)	1675
HinfI	GANTC	7 cut(s)	880, 1309, 1558, 1630, 1661, 2146, 2206
HpaII	CCGG	6 cut(s)	432, 492, 987, 1029, 1786, 2143
HphI	GGTGA	6 cut(s)	68, 1043, 1342, 1363, 1480, 2175
Hpy166II	GTNNAC	7 cut(s)	457, 712, 741, 754, 1405, 1600, 2031
Hpy8I	GTNNAC	7 cut(s)	457, 712, 741, 754, 1405, 1600, 2031
Hpy99I	CGWCG	7 cut(s)	542, 637, 980, 1069, 1753, 1777, 2086
HpyAV	CCTTC	8 cut(s)	119, 229, 430, 694, 728, 808, 899, 1708
HpyCH4IV	ACGT	5 cut(s)	424, 444, 1044, 1242, 2157
HpyCH4V	TGCA	5 cut(s)	45, 120, 1103, 1153, 1721
HpyF3I	CTNAG	5 cut(s)	130, 159, 316, 937, 1451
HpySE526I	ACGT	5 cut(s)	424, 444, 1044, 1242, 2157
Hsp92I	GRCGYC	2 cut(s)	978, 1297
HspAI	GCGC	7 cut(s)	89, 141, 299, 326, 440, 592, 1297
KasI	GGCGCC	1 cut(s)	1296
KflI	GGGWCCC	1 cut(s)	550
Kpn2I	TCCGGA	1 cut(s)	2142
KroI	GCCGGC	1 cut(s)	986
KroNI	GCCGGC	1 cut(s)	988
Ksp22I	TGATCA	3 cut(s)	867, 993, 1764
LguI	GCTCTTC	2 cut(s)	308, 342
LmnI	GCTCC	1 cut(s)	1069
Lsp1109I	GCAGC	4 cut(s)	216, 1385, 1819, 1861
LweI	GCATC	5 cut(s)	54, 504, 1090, 1117, 1708
MaeI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
MaeII	ACGT	5 cut(s)	424, 444, 1044, 1242, 2157
MbiI	CCGCTC	1 cut(s)	1165
MboII	GAAGA	7 cut(s)	10, 55, 295, 359, 1865, 1976, 2075
MhlI	GDGCHC	2 cut(s)	345, 354
MlsI	TGGCCA	3 cut(s)	464, 1703, 1976
MluCI	AATT	5 cut(s)	952, 959, 1612, 2001, 2116
MluNI	TGGCCA	3 cut(s)	464, 1703, 1976
Mly113I	GGCGCC	1 cut(s)	1297
MlyI	GAGTC	4 cut(s)	1318, 1552, 1670, 2140
MmeI	TCCRAC	5 cut(s)	810, 1047, 1426, 1531, 1731
Mox20I	TGGCCA	3 cut(s)	464, 1703, 1976
Mph1103I	ATGCAT	1 cut(s)	1105
MroI	TCCGGA	1 cut(s)	2142
MroNI	GCCGGC	1 cut(s)	986
MroXI	GAANNNNTTC	2 cut(s)	1676, 2067
MscI	TGGCCA	3 cut(s)	464, 1703, 1976
MseI	TTAA	4 cut(s)	678, 1176, 1430, 1623
MslI	CAYNNNNRTG	1 cut(s)	1463
Msp20I	TGGCCA	3 cut(s)	464, 1703, 1976
MspI	CCGG	6 cut(s)	432, 492, 987, 1029, 1786, 2143
MspR9I	CCNGG	6 cut(s)	433, 461, 851, 1786, 1787, 1821
MvaI	CCWGG	3 cut(s)	461, 851, 1821
MvnI	CGCG	5 cut(s)	89, 299, 326, 542, 594
NaeI	GCCGGC	1 cut(s)	988
NarI	GGCGCC	1 cut(s)	1297
NciI	CCSGG	3 cut(s)	433, 1786, 1787
NcoI	CCATGG	1 cut(s)	1957
NgoMIV	GCCGGC	1 cut(s)	986
NlaIV	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
NmuCI	GTSAC	8 cut(s)	74, 932, 1016, 1031, 1219, 1351, 1555, 1900
NruI	TCGCGA	1 cut(s)	542
NsiI	ATGCAT	1 cut(s)	1105
NspV	TTCGAA	1 cut(s)	560
PagI	TCATGA	1 cut(s)	1561
PaqCI	CACCTGC	1 cut(s)	1922
PceI	AGGCCT	1 cut(s)	410
PciSI	GCTCTTC	2 cut(s)	308, 342
PcsI	WCGNNNNNNNCGW	4 cut(s)	351, 450, 651, 1310
PdiI	GCCGGC	1 cut(s)	988
PdmI	GAANNNNTTC	2 cut(s)	1676, 2067
PfeI	GAWTC	3 cut(s)	880, 1630, 2206
Pfl23II	CGTACG	1 cut(s)	1239
PflFI	GACNNNGTC	1 cut(s)	2086
PinAI	ACCGGT	1 cut(s)	1028
PkrI	GCNGC	8 cut(s)	206, 430, 596, 820, 1164, 1375, 1834, 1876
PleI	GAGTC	4 cut(s)	1317, 1552, 1669, 2140
PluTI	GGCGCC	1 cut(s)	1300
PmaCI	CACGTG	2 cut(s)	425, 445
PmlI	CACGTG	2 cut(s)	425, 445
PpsI	GAGTC	4 cut(s)	1317, 1552, 1669, 2140
Ppu21I	YACGTR	2 cut(s)	425, 445
PpuMI	RGGWCCY	1 cut(s)	550
PshBI	ATTAAT	1 cut(s)	1430
Psp124BI	GAGCTC	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	2157
Psp5II	RGGWCCY	1 cut(s)	550
Psp6I	CCWGG	3 cut(s)	459, 849, 1819
PspCI	CACGTG	2 cut(s)	425, 445
PspEI	GGTNACC	2 cut(s)	74, 1031
PspGI	CCWGG	3 cut(s)	459, 849, 1819
PspLI	CGTACG	1 cut(s)	1239
PspN4I	GGNNCC	9 cut(s)	496, 551, 552, 1013, 1092, 1298, 1796, 1818, 1825
PspPI	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
PspPPI	RGGWCCY	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	2086
RruI	TCGCGA	1 cut(s)	542
RsaI	GTAC	7 cut(s)	483, 653, 684, 1052, 1109, 1241, 2030
RsaNI	GTAC	7 cut(s)	482, 652, 683, 1051, 1108, 1240, 2029
RseI	CAYNNNNRTG	1 cut(s)	1463
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	2 cut(s)	308, 342
SaqAI	TTAA	4 cut(s)	678, 1176, 1430, 1623
SatI	GCNGC	8 cut(s)	205, 429, 595, 819, 1163, 1374, 1833, 1875
Sau96I	GGNCC	5 cut(s)	550, 610, 908, 1012, 1090
SchI	GAGTC	4 cut(s)	1318, 1552, 1670, 2140
ScrFI	CCNGG	6 cut(s)	433, 461, 851, 1786, 1787, 1821
SduI	GDGCHC	2 cut(s)	345, 354
SfaNI	GCATC	5 cut(s)	54, 504, 1090, 1117, 1708
SfcI	CTRYAG	1 cut(s)	832
SfoI	GGCGCC	1 cut(s)	1298
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
SmaI	CCCGGG	1 cut(s)	1787
SmiMI	CAYNNNNRTG	1 cut(s)	1463
SmlI	CTYRAG	1 cut(s)	1002
SmoI	CTYRAG	1 cut(s)	1002
SpeI	ACTAGT	1 cut(s)	1357
Sse9I	AATT	5 cut(s)	952, 959, 1612, 2001, 2116
SseBI	AGGCCT	1 cut(s)	410
SspDI	GGCGCC	1 cut(s)	1296
SspMI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
SstI	GAGCTC	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	6 cut(s)	431, 459, 849, 1784, 1785, 1819
StyI	CCWWGG	2 cut(s)	1667, 1957
TaiI	ACGT	5 cut(s)	427, 447, 1047, 1245, 2160
TasI	AATT	5 cut(s)	952, 959, 1612, 2001, 2116
TatI	WGTACW	1 cut(s)	1050
TauI	GCSGC	4 cut(s)	431, 597, 821, 1165
TfiI	GAWTC	3 cut(s)	880, 1630, 2206
Tru1I	TTAA	4 cut(s)	678, 1176, 1430, 1623
Tru9I	TTAA	4 cut(s)	678, 1176, 1430, 1623
TscAI	CASTG	6 cut(s)	399, 692, 712, 1536, 1834, 1931
TseFI	GTSAC	8 cut(s)	74, 932, 1016, 1031, 1219, 1351, 1555, 1900
TseI	GCWGC	4 cut(s)	204, 1373, 1832, 1874
Tsp45I	GTSAC	8 cut(s)	74, 932, 1016, 1031, 1219, 1351, 1555, 1900
TspDTI	ATGAA	4 cut(s)	953, 1508, 1571, 2033
TspGWI	ACGGA	9 cut(s)	403, 469, 832, 1004, 1053, 1112, 1319, 1440, 1724
TspMI	CCCGGG	1 cut(s)	1785
TspRI	CASTG	6 cut(s)	399, 692, 712, 1536, 1834, 1931
Tth111I	GACNNNGTC	1 cut(s)	2086
VpaK11BI	GGWCC	5 cut(s)	550, 610, 908, 1012, 1090
VspI	ATTAAT	1 cut(s)	1430
XapI	RAATTY	3 cut(s)	959, 1612, 2116
XmaI	CCCGGG	1 cut(s)	1785
XmiI	GTMKAC	1 cut(s)	1599
XmnI	GAANNNNTTC	2 cut(s)	1676, 2067
XspI	CTAG	7 cut(s)	875, 1008, 1358, 1511, 1692, 1836, 2094
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.