Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001512.1

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

75413 .. 77964

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001512.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgcaggttatttctgaaattgttgaaagttgccgtgcacatgactacacagatgttgtgttggtgcatgaacatcgtggtaaacttgatggtttgattgtatgccaccttccatatggaccaacagcttattttcaactatgcaatgtggtttcaagacatgacatcaaggacaagaaagccatgggaacggtgccacaggcttatccacatttgataattaacaatttcacgactaagttgggtgagcggactgcaaatattttaaaacatctttttccagtgccaaagccagatacaaaacgcataatcactttttcgaatgagcaggactacatttcattcagtctagaaagcccatttgtgagggcaacttggcaaggccggaaaggtggcttcccggcgacggatttgcgacttccggataccgtagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Brix

Protein Analysis

145

Amino Acids

16.4

Weight (kDa)

8.46

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	250
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	26, 137, 156
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	40
Alw44I	GTGCAC	1 cut(s)	36
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	382
ApaLI	GTGCAC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	193
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	18
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 394, 428
BciVI	GTATCC	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	401
BfaI	CTAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	151
BseAI	TCCGGA	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	385, 401, 422
BslI	CCNNNNNNNGG	1 cut(s)	406
BsnI	GGCC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp13I	TCCGGA	1 cut(s)	421
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	384
BspEI	TCCGGA	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	193, 430
BstBI	TTCGAA	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	4 cut(s)	41, 68, 161, 184
CviJI	RGCY	7 cut(s)	128, 182, 203, 292, 357, 384, 396
CviKI_1	RGCY	7 cut(s)	128, 182, 203, 292, 357, 384, 396
DdeI	CTNAG	1 cut(s)	237
DraI	TTTAAA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	4 cut(s)	44, 71, 164, 187
FaiI	YATR	9 cut(s)	42, 69, 103, 115, 117, 142, 162, 185, 308
FatI	CATG	4 cut(s)	40, 67, 160, 183
FauNDI	CATATG	1 cut(s)	115
FspBI	CTAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	3 cut(s)	385, 401, 422
Hin1II	CATG	4 cut(s)	44, 71, 164, 187
HpaII	CCGG	3 cut(s)	385, 401, 422
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	38, 83
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	4 cut(s)	156, 232, 350, 422
Hpy8I	GTNNAC	2 cut(s)	38, 83
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	2 cut(s)	193, 430
HpyCH4V	TGCA	5 cut(s)	4, 38, 67, 144, 257
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	44, 71, 164, 187
Kpn2I	TCCGGA	1 cut(s)	421
LpnPI	CCDG	6 cut(s)	185, 294, 306, 314, 398, 414
MaeI	CTAG	1 cut(s)	350
MbiI	CCGCTC	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	18, 219, 226
MnlI	CCTC	1 cut(s)	360
MroI	TCCGGA	1 cut(s)	421
MseI	TTAA	2 cut(s)	222, 266
MspI	CCGG	3 cut(s)	385, 401, 422
MspR9I	CCNGG	1 cut(s)	401
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	115
NlaIII	CATG	4 cut(s)	44, 71, 164, 187
NlaIV	GGNNCC	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	222, 266
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	4 cut(s)	9, 111, 130, 394
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	3 cut(s)	18, 219, 226
SsiI	CCGC	1 cut(s)	250
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	193, 430
TaqI	TCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	18, 219, 226
Tru1I	TTAA	2 cut(s)	222, 266
Tru9I	TTAA	2 cut(s)	222, 266
TscAI	CASTG	1 cut(s)	288
TspDTI	ATGAA	2 cut(s)	84, 330
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.