Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002010

Physical Location & Seq

Genomic Coordinates Forward (+)

18097308 .. 18103567

Gene Structure 6260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATCTGCGTGTTCGAGAGCTATGGCGGGGATATCGGGTGGCGCCACACGGAGAGTCCGATAACGGGAATGGAGGTGAGAGAAGTGAGGCCAAAGGTGACACTAGTGGTTAGAATGGCAGCCTCAGTTGGTAACTATGACTATATCGTGGACTGGGAGTTCCAAACAGACGGATTAATCAGAGTAAAGGTTGGACTTAGTGGCATTTTGATGGTGAAAGGCACACCCTATGAGAACATGAACCAAGTCTTTGACCAAGACAATCTCCACGGCACTCTGTTATCTGAAAACGTTGTTGGAGTTATTCATGACCATTACATAACATTTCATCTTGATATGGATGTAGACGGTTCTGAAAATTCCTTTGTTAAAGTGAATCTCCAAAGGCAGCAAACCTCTCCTGATGAGTCGCCAAGGAAAAGCTTCTTGAAAGCAACTAGAACTGTGGCCAAAACGGAGAAGGATGCACAAGTTAAGCTAAAATTACTCTATGACCCGGCGGAGTTCCATGTGATCAACCAGTTGAAACAGACCCGGGTTGGGAACCCTGTCGGGTATAAGGTGGTTCCTGGTGCCACTGCTGCTAGTTTGCTTGATCCTGAAGACCCTCCCCAAAAGAGGGCTGCTTTTACGAATAACCAAATCTGGGTCACTCAATACAATCGGAGTGAGCAGTGGGCAGGTGGGTTGTTTGCTTACCAAAGCCATGGAGAAGATACTTTGGCCATGTGGTCTGACAAGGATCGAGAAATTGAGAATAAAGACATTGTGGTTTGGTACACATTAGGGTTTCATCACATACCATGCCAAGAAGACTTTCCTATAATGCCGACGGTGTCATCTAGCTTTGATTTGAAGCCTGTGAATTTCTTTCAGAGCAACCCCATACTCCGGACTCCTCCTAATGTTGAGAGCGATTTGCCGAAAGTTGCTAAAAAGAAAATGGGAGTGAAAGAGTCACACTCTCTATTTTACAATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001505 GO:0006807 GO:0006809 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0017144 GO:0023052 GO:0032870 GO:0033993 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0044237 GO:0044249 GO:0044271 GO:0046209 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0072593 GO:0097305 GO:0097306 GO:1901700 GO:1901701 GO:1903409 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

327

Amino Acids

37.08

Weight (kDa)

5.82

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	1 - 296	1.6e-96	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12270 AT4G12280 AT4G12290 AT4G12290
fragaria_vesca	FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610 FvH4_5g00610
malus_domestica	MD02G1257400.v1.1 MD06G1075500.v1.1 MD16G1192400.v1.1
prunus_persica	Prupe.5G078700_v2.0.a1 Prupe.5G078900_v2.0.a1
pyrus_communis	pycom09g07970 pycom13g04890 pycom15g15380 pycom15g15390
rosa_chinensis	RchiOBHm_Chr5g0060271 RchiOBHm_Chr7g0201651 RchiOBHm_Chr7g0201661
rosa_laevigata	RLG00000003658
rosa_multiflora	Rmu_sc0001512.1_g000015 Rmu_sc0004811.1_g000006 Rmu_sc0004811.1_g000008 Rmu_sc0004811.1_g000009 Rmu_sc0004811.1_g000010 Rmu_sc0004811.1_g000011
rosa_roxburghii	Rroxscaffold_3G00255130 Rroxscaffold_3G00255140 Rroxscaffold_3G00255150 Rroxscaffold_6G00396720
rosa_rugosa	Rorug07G0065300 Rorug07G0065300
rosa_samantha	Rh7AG192300 Rh7AG192500 Rh7BG194400 Rh7BG194500 Rh7BG194600 Rh7CG203500 Rh7CG203600 Rh7CG203700 Rh7DG197700
rosa_wichuraiana	Rw7G016860 Rw7G016870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	671
AccB1I	GGYRCC	2 cut(s)	42, 572
AccI	GTMKAC	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	891
AciI	CCGC	2 cut(s)	27, 500
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	2 cut(s)	590, 750
AcoI	YGGCCR	2 cut(s)	447, 723
AcsI	RAATTY	2 cut(s)	358, 865
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	779
AfiI	CCNNNNNNNGG	6 cut(s)	65, 540, 618, 619, 646, 891
AgsI	TTSAA	3 cut(s)	430, 526, 856
AhlI	ACTAGT	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	4 cut(s)	279, 311, 801, 833
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	21, 423, 478, 846
AluI	AGCT	4 cut(s)	21, 423, 478, 846
AlwI	GGATC	2 cut(s)	590, 750
Ama87I	CYCGRG	1 cut(s)	534
Aor13HI	TCCGGA	1 cut(s)	891
AoxI	GGCC	3 cut(s)	89, 447, 723
ApeKI	GCWGC	4 cut(s)	119, 388, 581, 623
ApoI	RAATTY	2 cut(s)	358, 865
AseI	ATTAAT	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	422, 816
AspLEI	GCGC	1 cut(s)	45
AsuC2I	CCSGG	3 cut(s)	497, 535, 536
AsuHPI	GGTGA	3 cut(s)	88, 109, 226
AvaI	CYCGRG	1 cut(s)	534
BalI	TGGCCA	2 cut(s)	449, 725
BanI	GGYRCC	2 cut(s)	42, 572
BbsI	GAAGAC	2 cut(s)	609, 819
BbvI	GCAGC	4 cut(s)	131, 400, 568, 610
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	570
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	3 cut(s)	497, 535, 536
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	4 cut(s)	104, 438, 585, 843
BfoI	RGCGCY	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	671
BisI	GCNGC	4 cut(s)	120, 389, 582, 624
BlsI	GCNGC	4 cut(s)	121, 390, 583, 625
Bme1390I	CCNGG	4 cut(s)	497, 535, 536, 570
BmeT110I	CYCGRG	1 cut(s)	534
BmiI	GGNNCC	4 cut(s)	44, 545, 567, 574
BmrFI	CCNGG	4 cut(s)	497, 535, 536, 570
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	2 cut(s)	609, 819
BplI	GAGNNNNNCTC	2 cut(s)	947, 979
BpuMI	CCSGG	3 cut(s)	497, 535, 536
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	4 cut(s)	268, 413, 534, 706
BsaWI	WCCGGW	1 cut(s)	891
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 540, 618, 619, 646, 891
Bse1I	ACTGG	2 cut(s)	158, 520
BseAI	TCCGGA	1 cut(s)	891
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	4 cut(s)	268, 413, 534, 706
BseGI	GGATG	2 cut(s)	346, 469
BseLI	CCNNNNNNNGG	6 cut(s)	65, 540, 618, 619, 646, 891
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	158, 520
BseRI	GAGGAG	1 cut(s)	888
BseXI	GCAGC	4 cut(s)	131, 400, 568, 610
BshFI	GGCC	3 cut(s)	91, 449, 725
BshNI	GGYRCC	2 cut(s)	42, 572
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	3 cut(s)	497, 535, 892
BslI	CCNNNNNNNGG	6 cut(s)	65, 540, 618, 619, 646, 891
BsnI	GGCC	3 cut(s)	91, 449, 725
BsoBI	CYCGRG	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	891
Bsp143I	GATC	4 cut(s)	3, 513, 595, 742
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	2 cut(s)	27, 500
BspANI	GGCC	3 cut(s)	91, 449, 725
BspCNI	CTCAG	1 cut(s)	137
BspEI	TCCGGA	1 cut(s)	891
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	4 cut(s)	44, 545, 567, 574
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	2 cut(s)	590, 750
BspT107I	GGYRCC	2 cut(s)	42, 572
BsrI	ACTGG	2 cut(s)	158, 520
BssECI	CCNNGG	4 cut(s)	268, 413, 534, 706
BssMI	GATC	4 cut(s)	3, 513, 595, 742
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	413, 706
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	350, 445, 835
BstACI	GRCGYC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	124, 197
BstDSI	CCRYGG	2 cut(s)	268, 706
BstF5I	GGATG	2 cut(s)	346, 469
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	4 cut(s)	6, 516, 598, 745
BstMBI	GATC	4 cut(s)	3, 513, 595, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	4 cut(s)	495, 533, 534, 568
BstV1I	GCAGC	4 cut(s)	131, 400, 568, 610
BstV2I	GAAGAC	2 cut(s)	609, 819
BstXI	CCANNNNNNTGG	1 cut(s)	707
BsuRI	GGCC	3 cut(s)	91, 449, 725
BtgI	CCRYGG	2 cut(s)	268, 706
BtsCI	GGATG	2 cut(s)	346, 469
BtsI	GCAGTG	2 cut(s)	576, 680
BtsIMutI	CAGTG	2 cut(s)	576, 680
BveI	ACCTGC	1 cut(s)	671
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	45
Cfr9I	CCCGGG	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	778
CviAII	CATG	6 cut(s)	238, 308, 509, 707, 727, 804
CviQI	GTAC	1 cut(s)	778
DdeI	CTNAG	2 cut(s)	124, 197
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	4 cut(s)	5, 515, 597, 744
DpnII	GATC	4 cut(s)	3, 513, 595, 742
EaeI	YGGCCR	2 cut(s)	447, 723
EciI	GGCGGA	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	413, 706
Eco32I	GATATC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	413, 706
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	413, 706
FaeI	CATG	6 cut(s)	241, 311, 512, 710, 730, 807
FatI	CATG	6 cut(s)	237, 307, 508, 706, 726, 803
FauI	CCCGC	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	513
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	120, 389, 582, 624
FokI	GGATG	2 cut(s)	353, 476
Fsp4HI	GCNGC	4 cut(s)	120, 389, 582, 624
FspBI	CTAG	4 cut(s)	104, 438, 585, 843
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	4 cut(s)	120, 389, 582, 624
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	3 cut(s)	91, 449, 725
HapII	CCGG	3 cut(s)	497, 535, 892
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	6 cut(s)	241, 311, 512, 710, 730, 807
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	421
HinfI	GANTC	5 cut(s)	55, 376, 407, 895, 956
HpaII	CCGG	3 cut(s)	497, 535, 892
HphI	GGTGA	3 cut(s)	88, 109, 226
Hpy166II	GTNNAC	3 cut(s)	151, 346, 780
Hpy188I	TCNGA	7 cut(s)	60, 182, 286, 355, 666, 736, 876
Hpy188III	TCNNGA	8 cut(s)	16, 308, 332, 401, 427, 599, 746, 892
Hpy8I	GTNNAC	3 cut(s)	151, 346, 780
Hpy99I	CGWCG	1 cut(s)	835
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	3 cut(s)	350, 445, 835
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	2 cut(s)	124, 197
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	6 cut(s)	241, 311, 512, 710, 730, 807
HspAI	GCGC	1 cut(s)	43
KasI	GGCGCC	1 cut(s)	42
Kpn2I	TCCGGA	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	4 cut(s)	3, 513, 595, 742
Lsp1109I	GCAGC	4 cut(s)	131, 400, 568, 610
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	4 cut(s)	104, 438, 585, 843
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	4 cut(s)	97, 131, 649, 957
MalI	GATC	4 cut(s)	5, 515, 597, 744
MboI	GATC	4 cut(s)	3, 513, 595, 742
MboII	GAAGA	3 cut(s)	614, 725, 824
MlsI	TGGCCA	2 cut(s)	449, 725
MluCI	AATT	4 cut(s)	358, 482, 750, 865
MluNI	TGGCCA	2 cut(s)	449, 725
Mly113I	GGCGCC	1 cut(s)	43
MlyI	GAGTC	4 cut(s)	64, 416, 889, 965
MmeI	TCCRAC	2 cut(s)	172, 277
MnlI	CCTC	7 cut(s)	67, 81, 133, 406, 612, 618, 909
Mox20I	TGGCCA	2 cut(s)	449, 725
MroI	TCCGGA	1 cut(s)	891
MroXI	GAANNNNTTC	2 cut(s)	422, 816
MscI	TGGCCA	2 cut(s)	449, 725
MseI	TTAA	3 cut(s)	176, 369, 474
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	2 cut(s)	449, 725
MspI	CCGG	3 cut(s)	497, 535, 892
MspR9I	CCNGG	4 cut(s)	497, 535, 536, 570
MvaI	CCWGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	1 cut(s)	581
NarI	GGCGCC	1 cut(s)	43
NciI	CCSGG	3 cut(s)	497, 535, 536
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	4 cut(s)	3, 513, 595, 742
NlaIII	CATG	6 cut(s)	241, 311, 512, 710, 730, 807
NlaIV	GGNNCC	4 cut(s)	44, 545, 567, 574
NmuCI	GTSAC	3 cut(s)	97, 649, 957
PagI	TCATGA	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	671
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PdmI	GAANNNNTTC	2 cut(s)	422, 816
PfeI	GAWTC	1 cut(s)	376
PflFI	GACNNNGTC	1 cut(s)	835
PkrI	GCNGC	4 cut(s)	121, 390, 583, 625
PleI	GAGTC	4 cut(s)	63, 415, 889, 964
PluTI	GGCGCC	1 cut(s)	46
PpsI	GAGTC	4 cut(s)	63, 415, 889, 964
PshBI	ATTAAT	1 cut(s)	176
Psp1406I	AACGTT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	4 cut(s)	44, 545, 567, 574
PsyI	GACNNNGTC	1 cut(s)	835
RsaI	GTAC	1 cut(s)	779
RsaNI	GTAC	1 cut(s)	778
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	176, 369, 474
SatI	GCNGC	4 cut(s)	120, 389, 582, 624
Sau3AI	GATC	4 cut(s)	3, 513, 595, 742
SchI	GAGTC	4 cut(s)	64, 416, 889, 965
ScrFI	CCNGG	4 cut(s)	497, 535, 536, 570
SfaNI	GCATC	1 cut(s)	454
SfoI	GGCGCC	1 cut(s)	44
SmaI	CCCGGG	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	103
Sse9I	AATT	4 cut(s)	358, 482, 750, 865
SsiI	CCGC	2 cut(s)	27, 500
SspDI	GGCGCC	1 cut(s)	42
SspMI	CTAG	4 cut(s)	104, 438, 585, 843
StyD4I	CCNGG	4 cut(s)	495, 533, 534, 568
StyI	CCWWGG	2 cut(s)	413, 706
TaaI	ACNGT	3 cut(s)	350, 445, 835
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	15, 745
TasI	AATT	4 cut(s)	358, 482, 750, 865
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	3 cut(s)	176, 369, 474
Tru9I	TTAA	3 cut(s)	176, 369, 474
TscAI	CASTG	2 cut(s)	583, 680
TseFI	GTSAC	3 cut(s)	97, 649, 957
TseI	GCWGC	4 cut(s)	119, 388, 581, 623
Tsp45I	GTSAC	3 cut(s)	97, 649, 957
TspDTI	ATGAA	4 cut(s)	254, 296, 317, 782
TspGWI	ACGGA	3 cut(s)	65, 186, 470
TspMI	CCCGGG	1 cut(s)	534
TspRI	CASTG	2 cut(s)	583, 680
Tth111I	GACNNNGTC	1 cut(s)	835
VspI	ATTAAT	1 cut(s)	176
XapI	RAATTY	2 cut(s)	358, 865
XmaI	CCCGGG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	2 cut(s)	422, 816
XspI	CTAG	4 cut(s)	104, 438, 585, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.